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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000095
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.513s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0174019.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr0 83860819 83865800 -
3 domain predictions
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Lj0g3v0174029.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr0 83862388 83865499 -
3 domain predictions
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Lj0g3v0334489.1
n.a. Rac GTPase activating protein, partial [Medicago truncatula] gi|357514407|ref|XP_003627492.1| chr0 175089412 175093593 -
5 domain predictions
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Lj1g3v0052540.1
n.a. ROP-interactive CRIB motif-containing protein 10 [Theobroma cacao] gi|508781365|gb|EOY28621.1| chr1 515245 517210 +
5 domain predictions
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Lj1g3v2809540.1
n.a. rop-interactive crib motif-containing protein 4 [Arabidopsis lyrata subsp]. lyrata] gi|297811791|ref|XP_002873779.1| chr1 32082731 32084792 -
4 domain predictions
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Lj1g3v3160060.1
n.a. Wiscott-Aldrich syndrome, C-terminal [Medicago truncatula] gi|124360804|gb|ABN08776.1| chr1 35902693 35905187 -
4 domain predictions
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Lj1g3v4717450.1
n.a. rac GTPase activating protein 1 [Lotus japonicus] gi|3695059|gb|AAC62624.1| chr1 56306625 56310783 -
5 domain predictions
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Lj1g3v4717460.1
n.a. n.a. chr1 56306699 56310919 -
5 domain predictions
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Lj1g3v4764220.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr1 57304079 57307181 +
5 domain predictions
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Lj1g3v4764230.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr1 57304380 57307491 +
5 domain predictions
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Lj1g3v5060420.1
n.a. rac GTPase activating protein 2 [Lotus japonicus] gi|3695061|gb|AAC62625.1| chr1 61802787 61806720 +
4 domain predictions
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Lj3g3v1182350.1
n.a. PREDICTED: rho GTPase-activating protein 24-like [Cicer arietinum] gi|502083538|ref|XP_004487490.1| chr3 15783696 15789109 +
5 domain predictions
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Lj3g3v1182350.2
n.a. PREDICTED: rho GTPase-activating protein 24-like [Cicer arietinum] gi|502083538|ref|XP_004487490.1| chr3 15784729 15790162 +
5 domain predictions
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Lj3g3v1541350.1
n.a. ROP-interactive CRIB motif-containing protein 10 [Theobroma cacao] gi|508781365|gb|EOY28621.1| chr3 19728536 19730501 +
5 domain predictions
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Lj3g3v2993420.1
n.a. PREDICTED: rho GTPase-activating protein 24-like [Cicer arietinum] gi|502083538|ref|XP_004487490.1| chr3 37054384 37058983 -
5 domain predictions
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Lj4g3v3116240.1
n.a. rop-interactive crib motif-containing protein 4 [Arabidopsis lyrata subsp]. lyrata] gi|297811791|ref|XP_002873779.1| chr4 42263323 42265567 -
4 domain predictions
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Lj5g3v1681410.1
n.a. PREDICTED: rho GTPase-activating protein 19-like [Cicer arietinum] gi|502117904|ref|XP_004496003.1| chr5 23858063 23862230 -
4 domain predictions
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LotjaGi1g1v0484700.1
n.a. ROP-interactive CRIB motif protein; TAIR: AT5G16490.1 ROP-interactive CRIB motif-containing protein 4; Swiss-Prot: sp|Q9FFD5|RIC4_ARATH CRIB domain-containing protein RIC4; TrEMBL-Plants: tr|Q2HW10|Q2HW10_MEDTR ROP-interactive CRIB motif protein; Found in the gene: LotjaGi1g1v0484700 LjG1.1_chr1 99812715 99815741 +
3 domain predictions
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LotjaGi1g1v0530300.1
n.a. ROP-interactive CRIB motif protein; TAIR: AT5G16490.1 ROP-interactive CRIB motif-containing protein 4; Swiss-Prot: sp|Q9FFD5|RIC4_ARATH CRIB domain-containing protein RIC4; TrEMBL-Plants: tr|I3T134|I3T134_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0530300 LjG1.1_chr1 105740268 105742950 -
3 domain predictions
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LotjaGi1g1v0675100.1
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|O82458|O82458_LOTJA Rac GTPase activating protein 1; Found in the gene: LotjaGi1g1v0675100 LjG1.1_chr1 124226569 124231210 +
4 domain predictions
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LotjaGi1g1v0707100.1
n.a. ROP interacting CRIB motif protein; TAIR: AT4G28556.1 PAK-box/P21-Rho-binding family protein; Swiss-Prot: sp|Q1G3K8|RIC7_ARATH CRIB domain-containing protein RIC7; TrEMBL-Plants: tr|I3S411|I3S411_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0707100 LjG1.1_chr1 127549280 127554022 +
4 domain predictions
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LotjaGi1g1v0743900.1
n.a. Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|O82460|O82460_LOTJA Rac GTPase activating protein 3; Found in the gene: LotjaGi1g1v0743900 LjG1.1_chr1 131749147 131752806 +
4 domain predictions
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LotjaGi1g1v0795800.1
n.a. Rho GTPase-activating protein; TAIR: AT2G46710.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q8GYY5|RGAP3_ARATH Rho GTPase-activating protein 3; TrEMBL-Plants: tr|O82459|O82459_LOTJA Rac GTPase activating protein 2; Found in the gene: LotjaGi1g1v0795800 LjG1.1_chr1 136659116 136664323 +
3 domain predictions
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LotjaGi2g1v0458000.1
n.a. ROP interacting CRIB motif protein; TAIR: AT2G33460.1 ROP-interactive CRIB motif-containing protein 1; Swiss-Prot: sp|F4IVV0|RIC1_ARATH CRIB domain-containing protein RIC1; TrEMBL-Plants: tr|I1LE83|I1LE83_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0458000 LjG1.1_chr2 95158025 95162253 -
4 domain predictions
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LotjaGi3g1v0177500.1
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|G7ITU3|G7ITU3_MEDTR PAK-box/P21-Rho-binding domain Rho GTPase activating protein; Found in the gene: LotjaGi3g1v0177500 LjG1.1_chr3 24658931 24665968 +
4 domain predictions
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LotjaGi3g1v0401300.1
n.a. Rho GTPase-activating protein; TAIR: AT2G46710.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q8GYY5|RGAP3_ARATH Rho GTPase-activating protein 3; TrEMBL-Plants: tr|G7L9Z1|G7L9Z1_MEDTR Rac GTPase activating protein; Found in the gene: LotjaGi3g1v0401300 LjG1.1_chr3 80353824 80358825 +
4 domain predictions
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LotjaGi3g1v0476500.1
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|A0A0L9V664|A0A0L9V664_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0476500 LjG1.1_chr3 89312622 89317351 -
4 domain predictions
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LotjaGi5g1v0154700.1
n.a. ROP interacting CRIB motif protein; TAIR: AT2G20430.1 ROP-interactive CRIB motif-containing protein 6; Swiss-Prot: sp|Q1PF35|RIC6_ARATH CRIB domain-containing protein RIC6; TrEMBL-Plants: tr|A0A072VM40|A0A072VM40_MEDTR PAK-box/P21-Rho-binding family protein; Found in the gene: LotjaGi5g1v0154700 LjG1.1_chr5 40160433 40162751 +
4 domain predictions
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LotjaGi5g1v0189200.1
n.a. ROP-interactive CRIB motif protein; TAIR: AT1G04450.1 ROP-interactive CRIB motif-containing protein 3; Swiss-Prot: sp|F4I5N6|RIC3_ARATH CRIB domain-containing protein RIC3; TrEMBL-Plants: tr|K7N4R4|K7N4R4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0189200 LjG1.1_chr5 47844441 47847522 -
3 domain predictions
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LotjaGi5g1v0261200.1
n.a. Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|A0A0L9TWU4|A0A0L9TWU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0261200 LjG1.1_chr5 56989750 56993045 +
3 domain predictions
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LotjaGi6g1v0003400.1
n.a. ROP-interactive CRIB motif protein; TAIR: AT2G33460.1 ROP-interactive CRIB motif-containing protein 1; Swiss-Prot: sp|F4IVV0|RIC1_ARATH CRIB domain-containing protein RIC1; TrEMBL-Plants: tr|K7K5S1|K7K5S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0003400 LjG1.1_chr6 721820 727946 +
3 domain predictions
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