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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0709400 |
Transcript ID | LotjaGi1g1v0709400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protodermal factor 1; TAIR: AT2G20515.1 pollen Ole e I family allergen protein; Swiss-Prot: sp|Q9S728|PDF1_ARATH Protodermal factor 1; TrEMBL-Plants: tr|I1JP39|I1JP39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0709400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127758365..127760194) extracted from Lotus japonicus Gifu genome v1.2.
GGTCAAAGGTTCATCGGATTAAGGCGTAAGCCAAGCCAAACGGCACTTACAAGCAAAGGGTATCGAACCCTAGAAAGGAG CACATACAGCATAGCACACATATACTCATTACAGAACAAGCTAGCATGCTCTAACACACTTGGATCAGTAAAATCCAAAC TACACAGATCAAAGACTAAACAGACCACAACAAACACACTTAATCTCTAACCAAACTTGATCTGCAACTCTCAAAGCGAA AAACTAATCTTATGATTTTTATGTCGCTTTTAGCCAGGCCGACTCTGCCGGTACCGCAGATAACTGCATCTGCTTCAAGG CTTTCATCACCACAGGGTGCTCATGAGGCACCACCACAAGAATTGAGAAGAGCAGAAGGCAAGCCAGGGAGTGAGATGAA TGCGCAACGAAACAGGACCAAGGGGGAGACGGTGGCCCACGGCCGCGGGCAGAGATCTCGGACGGTGGCTCATTTGAACA TTTGTTCAAGAAGTAGAAGCCCAAAGCAACTTCAAATGGGTCATACACTATAGTAAAAAATAGCAAGAAGTTACAGCTAG TGGGCTACTTCTTTGGGTCTCCCAATTTGATGATAATCTATTGACAAAAAAAAAAAAACACCTGGTACTTCTTTGGATTG ATTATTAATCCTAGGCCAGCTAGCATAGCAATAGCAATGGTAACTTTGTCCAAGTATATTTTAATATATACATGTTCACG TGTTCCTAGAAAACAGAGTAAACAGTGGAGTGTAACGTTCAAACTAGCATAAACCAAATCTTGAATAAATCTAAGAGTAC AGATCCCTTACCAGATAAATGGACATTTAGCAAATGAGAGAGTTCAAAAATCAAAATCAGCCTTGGAAGACGACAACCAG GGAGGGATAATGTCTTTACTCTCAACCACACTCCTTCTTCTTCTTCTATTTTGTTGTCATGTCTTCTCAGCTCCCCACTC AGTAGCCGCAGCAAGTCAGAGACAGAACATCCCTGGCTTCATCTACACAAGAAGCAGAGGAAGATGCACTCCACAGTAAG AAACAAACAAACAAACATTGTTCATTTGTTCTGTTCAGTTTTGTTCATTGAAGATGTAATGTTGATATTGTTATATTATT GTGTGGTTTATTTATGAGCAGGTTCTGGAGTGGGAGGAGAGAGGCATGGCCGCGTATGGTACCGGAGACATCAACGGTGA CGAACGTATTCGGGTCAAGAGTATACGAACGGTACAGATCTGATCTGACATTGCTGGAAGCCACGGAGAGGAACGACGAG GAAGGGAACCCCTTCAGAGCCTTGTTGAAGGAAGGCACCGCAGCGTTGCTGAACTCTTACGCCAGAGAGGGTTTCCCTTA TAAGCCATGGCAGGTCAAGACTCTGCTCATTCAAGCGTTGGTCTCTGAGGCTTCAGCTACTTCTCAAGCCAAGCACTTCT CATTGGCTAATCATGCTTGCTCTTAGTTTGTTTGTTTTGAAGATTCATGGGATTGGGAAGAGGAATGGCTATTGGCTTCT AATTGTTTTGTTGGAATCACATTTTAGCCATGTTTTCTGTATTTTTGTGTGTGTGTGTTTTGCTTGTATATTATAGACTG GAAATGAGAAATCACTACTCTATGATGTGATTTGGAATGTTAAGGAGGTTGATCATTGAATCGATGATATGTGGCTGGGA ATTTTGTGATGATGCAAAATTGGATTTCTTCACTTCCTTGTCTTTATCTATATGTATTTGGGATACCCATCTTTAATTAG GTTCAATCATTTAATTTTATGAATGTTTCCAAACAATTGAGAAAATGATAGTGCAACTTTAACCTTGAAA
CDS sequence (LotjaGi1g1v0709400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTACTCTCAACCACACTCCTTCTTCTTCTTCTATTTTGTTGTCATGTCTTCTCAGCTCCCCACTCAGTAGCCGC AGCAAGTCAGAGACAGAACATCCCTGGCTTCATCTACACAAGAAGCAGAGGAAGATGCACTCCACAGTTCTGGAGTGGGA GGAGAGAGGCATGGCCGCGTATGGTACCGGAGACATCAACGGTGACGAACGTATTCGGGTCAAGAGTATACGAACGGTAC AGATCTGATCTGACATTGCTGGAAGCCACGGAGAGGAACGACGAGGAAGGGAACCCCTTCAGAGCCTTGTTGAAGGAAGG CACCGCAGCGTTGCTGAACTCTTACGCCAGAGAGGGTTTCCCTTATAAGCCATGGCAGGTCAAGACTCTGCTCATTCAAG CGTTGGTCTCTGAGGCTTCAGCTACTTCTCAAGCCAAGCACTTCTCATTGGCTAATCATGCTTGCTCTTAG
Protein sequence (LotjaGi1g1v0709400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLLSTTLLLLLLFCCHVFSAPHSVAAASQRQNIPGFIYTRSRGRCTPQFWSGRREAWPRMVPETSTVTNVFGSRVYERY RSDLTLLEATERNDEEGNPFRALLKEGTAALLNSYAREGFPYKPWQVKTLLIQALVSEASATSQAKHFSLANHACS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
SignalP_EUK | 1 | 20 | 20 | - | – | |
Phobius | 1 | 2 | 2 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
Phobius | 1 | 27 | 27 | - | – | |
Phobius | 3 | 15 | 13 | - | – | |
PANTHER | 9 | 156 | 148 | 9.7E-70 | – | |
PANTHER | 9 | 156 | 148 | 9.7E-70 | ||
Phobius | 16 | 27 | 12 | - | – | |
Phobius | 28 | 156 | 129 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0709400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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