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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0712800 |
| Transcript ID | LotjaGi1g1v0712800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor, putative; TAIR: AT1G50640.1 ethylene responsive element binding factor 3; Swiss-Prot: sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3; TrEMBL-Plants: tr|V7CWJ3|V7CWJ3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0712800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128071932..128072776) extracted from Lotus japonicus Gifu genome v1.2.
CAACAACACAAACCTGTCGGCGTAAACCCAACAGTCCCCACCTCTATTTATATTCATCAACTTCATTCACTCGTCTCACT CACACTCCCACTTCTCTCTGTTCTCCATTCACACTCTGTTTTCACTCTGTCCTCTGTCTTCATCACCCATGTCTCCTTCA CCTTCGTCCATGGAGTCCCATCACTTCAGGGGCGTCCGGAAGCGTCCATGGGGCCGCTTCGCCGCCGAGATCCGCGACCC CTGGAAGAAGACCCGCAAGTGGCTTGGCACCTTCGACACCGCTGAGGAAGCCGCCAGGGCCTACGACCACGCCGCCAGAA CGCTCCGCGGCCCCAAGGCCAAGACCAACTTCTCCTACGACTCCGGCGGATTTTTCCCGCCGCATCCTGTCAAGTTCTGG GGACCTCCGGCTTTCTTCGCCGGAGTGCCGGTGAGATCGGAGTACCAGGGTTACAAGCTAGAGACTATTGCGGGTGCTGT GGTGAACAAGGAGGAGAAGAAGAAGCCCTTTTTGTTTGACCTTAACCTGCCGGCGCCGCTCCTCTGAAGACTGAAGTCAG TCGCCGGCGAAGAATGTTTGAATATAGCGCCGACAGCGACGGTGGCATAGTTTTTTTTTTCTTTTTTAAGAATTCGTTTC TGTTTTTTTTTTTTTTGGGTTGGAAATTTTGGGGTGCTCCTGTGCCTTTGATGTTATGTATAGAGCAGCTTCACAGGTTT GGACATTTTGGAGCACCATTTTAACTAGATGCCGGCGAAGGTGTATGTTTTTTTATCTAATCAAACAACTTTAATTTTGT ATTATCCTTTGATGCTTGCATTTTCAGGTGAAAAATGTTTTGTTC
CDS sequence (LotjaGi1g1v0712800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCTTCACCTTCGTCCATGGAGTCCCATCACTTCAGGGGCGTCCGGAAGCGTCCATGGGGCCGCTTCGCCGCCGA GATCCGCGACCCCTGGAAGAAGACCCGCAAGTGGCTTGGCACCTTCGACACCGCTGAGGAAGCCGCCAGGGCCTACGACC ACGCCGCCAGAACGCTCCGCGGCCCCAAGGCCAAGACCAACTTCTCCTACGACTCCGGCGGATTTTTCCCGCCGCATCCT GTCAAGTTCTGGGGACCTCCGGCTTTCTTCGCCGGAGTGCCGGTGAGATCGGAGTACCAGGGTTACAAGCTAGAGACTAT TGCGGGTGCTGTGGTGAACAAGGAGGAGAAGAAGAAGCCCTTTTTGTTTGACCTTAACCTGCCGGCGCCGCTCCTCTGA
Protein sequence (LotjaGi1g1v0712800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPSPSSMESHHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDHAARTLRGPKAKTNFSYDSGGFFPPHP VKFWGPPAFFAGVPVRSEYQGYKLETIAGAVVNKEEKKKPFLFDLNLPAPLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 71 | 61 | 4.7E-30 | ||
| SUPERFAMILY | 12 | 70 | 59 | 2.35E-22 | ||
| CDD | 12 | 68 | 57 | 1.3178E-28 | ||
| SMART | 12 | 75 | 64 | 1.4E-33 | ||
| Pfam | 12 | 61 | 50 | 1.3E-12 | ||
| ProSiteProfiles | 12 | 69 | 58 | 22.352 | ||
| PANTHER | 12 | 80 | 69 | 5.0E-45 | – | |
| PANTHER | 12 | 80 | 69 | 5.0E-45 | – | |
| PRINTS | 13 | 24 | 12 | 1.4E-10 | ||
| PRINTS | 35 | 51 | 17 | 1.4E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0712800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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