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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0713100 |
| Transcript ID | LotjaGi1g1v0713100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRA1 family protein; TAIR: AT1G55190.1 PRA1 (Prenylated rab acceptor) family protein; Swiss-Prot: sp|Q9C889|PR1F2_ARATH PRA1 family protein F2; TrEMBL-Plants: tr|A0A072U3G2|A0A072U3G2_MEDTR PRA1 family protein; Found in the gene: LotjaGi1g1v0713100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128126836..128128359) extracted from Lotus japonicus Gifu genome v1.2.
GAAATAATTCATTTAGTTTAAATTTTAATTAAAATCATAACGAACCATTTTAGATCAAAAATAAAATTTTGAAGGCCTAA AATCTTTATATTTTTTTCAGGTACCATTTTATATTTATGTGTATAAGTTAGGCATATTTAACCCTAAATAAATAAATTAA TAAAATATAAAAATACCAATTAATTATCTTAAATGTGATTGGTCCACCTAGATCATGGGTTATTTAACTTACATGTTATA ATATTACCTAGTTATGCACATCGTGATTAGTTAGTTGCCGTCGGCCGCAAAGTGGGACCCCGCAACACTTCACTGCCCAC CTGGATTTCATTTCATTCGTTCGCTTCGCTCGCTGGCATCTCTTCTTATCAAACAAACGACAACACATAAACACATAAAA CGACACCACTGTTCCCCACAACGCACCTTTCCCCTTTCTCAATCTTCATCTTCTTCCTCAGCAACCACAGCTTCAAAATT CGATCAGTTTCATCACTGCTCTGTGATGCTGTGATGTCTTCTTCTTCATCATCTGCTTCATCTTCAGCACCACCACCACC ACAGAAATACAGCTCCCTCCCTTCACCCTCATCCTCCAACTCCACCAACCTTCACTTCCCCCCACGCCCAACCACCACCT CAAACCCCGTCTTCCCCACGCGCCGCCCATGGGAGGAAGTCTTCGCGCTCTACTCATTCACGCGCCCCTACTCCCTCGGC GAAGCCAGGTTGCGCGTGAAGCGCAACCTCACCCACTTCCGCGTTAACTACTTCAACATCGTCCTCTCCGTGATTGGCAT CAGCCTCCTGTGGCACCCTACATCGATCATCGTCTTCCTGGTCGCGCTTGTCCCCTGGTTCTTCCTCTACTTCTACCGTG ACAAGCCGCTGGTGCTGTTCGGCCGCGCCGTTGACGACAGGGCTGTGGAGGTGGCGCTCTCGGTGGTGACGGTTGTGGCG TTGGGACTCACCAGCGTGTGGGTGAATGTTTTGGTTTCGATTGTCGTTGGGGTGGTTCTGGTGGGGTTGCACGCTGCGTT TAGGAGCACGGAGGATTTGTATGTGGATGAGCATGAGGGTTATGGTGGAGGGTTGCTTTCATCATTTGTTGGGGGTACCC CAACCAAGGGTACAGGCATAGTGCCATAATATAAATCATTCATTTGTGCAAACATATATGCTCATTTAGTAAGGACAAAC CAATTTTTCAGAAGAAAGTAGTGTGTTGAATTTCCGTTGCTGATGTAAGGACTATGTTGGTGAGCAATTATGTAATTAGT GTAGTTTGATTTTTATACACTTTGGCATTGTAATAGGTTGCTCATCCTGGGCAAATTTTTTTTTCCTTGTCAATTTATAG CATAGCTACATTTCAGTCTGCCATCCTCCAGTTTCTGAATATTGATGGTAGGTTAATTTTTTAATATAAGGTTCTCTGAT ACTTTGCATATTTTCAAGCTTGTGTTAAAATAGTCAATGCCACTATGCCAGTTCTTCAAAACCATGTCAGAAAGGGACAG AGTA
CDS sequence (LotjaGi1g1v0713100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTTCTTCATCATCTGCTTCATCTTCAGCACCACCACCACCACAGAAATACAGCTCCCTCCCTTCACCCTCATC CTCCAACTCCACCAACCTTCACTTCCCCCCACGCCCAACCACCACCTCAAACCCCGTCTTCCCCACGCGCCGCCCATGGG AGGAAGTCTTCGCGCTCTACTCATTCACGCGCCCCTACTCCCTCGGCGAAGCCAGGTTGCGCGTGAAGCGCAACCTCACC CACTTCCGCGTTAACTACTTCAACATCGTCCTCTCCGTGATTGGCATCAGCCTCCTGTGGCACCCTACATCGATCATCGT CTTCCTGGTCGCGCTTGTCCCCTGGTTCTTCCTCTACTTCTACCGTGACAAGCCGCTGGTGCTGTTCGGCCGCGCCGTTG ACGACAGGGCTGTGGAGGTGGCGCTCTCGGTGGTGACGGTTGTGGCGTTGGGACTCACCAGCGTGTGGGTGAATGTTTTG GTTTCGATTGTCGTTGGGGTGGTTCTGGTGGGGTTGCACGCTGCGTTTAGGAGCACGGAGGATTTGTATGTGGATGAGCA TGAGGGTTATGGTGGAGGGTTGCTTTCATCATTTGTTGGGGGTACCCCAACCAAGGGTACAGGCATAGTGCCATAA
Protein sequence (LotjaGi1g1v0713100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSSSASSSAPPPPQKYSSLPSPSSSNSTNLHFPPRPTTTSNPVFPTRRPWEEVFALYSFTRPYSLGEARLRVKRNLT HFRVNYFNIVLSVIGISLLWHPTSIIVFLVALVPWFFLYFYRDKPLVLFGRAVDDRAVEVALSVVTVVALGLTSVWVNVL VSIVVGVVLVGLHAAFRSTEDLYVDEHEGYGGGLLSSFVGGTPTKGTGIVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 15 | 15 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| Phobius | 1 | 81 | 81 | - | – | |
| PANTHER | 17 | 204 | 188 | 5.4E-80 | – | |
| PANTHER | 17 | 204 | 188 | 5.4E-80 | ||
| MobiDBLite | 22 | 47 | 26 | - | – | |
| Pfam | 47 | 186 | 140 | 5.4E-44 | ||
| TMHMM | 82 | 100 | 19 | - | – | |
| Phobius | 82 | 99 | 18 | - | – | |
| Phobius | 100 | 104 | 5 | - | – | |
| TMHMM | 104 | 121 | 18 | - | – | |
| Phobius | 105 | 121 | 17 | - | – | |
| Phobius | 122 | 141 | 20 | - | – | |
| Phobius | 142 | 175 | 34 | - | – | |
| TMHMM | 154 | 176 | 23 | - | – | |
| Phobius | 176 | 211 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0713100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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