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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0715600 |
| Transcript ID | LotjaGi1g1v0715600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT4G02670.1 indeterminate(ID)-domain 12; Swiss-Prot: sp|O22759|IDD12_ARATH Protein indeterminate-domain 12; TrEMBL-Plants: tr|V7CZW2|V7CZW2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0715600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128384719..128388365) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCATAATCTACCACTGTCATCATCACCTTTTCTTCTCTTCTCTACTATTTAGGATACCAGAGAAATTGGATTTAAAC ATTTCTCTCCTCATCCACTCAACCCTATCTTCCCAAATACAATTTTTGTTTTTAAAATCTTCTGCTACATGAGCACTGAG ATTGTGTTCAGTAAATATCTTTTGTTTTTCAATGTCTTTGTTTGCATGGCTGGATTCTCTGGACCAATTCTCCACATTAA GACAGATATGTCTGAAATAGTTGTGCAGAGTTGCTCAGACAAGCAATCCATGGCATAGATAGCGACTTTGAAAATAACCC CACCACCCCACCACCCCCACCATCATCTTCTCTTCACCATTTTTAACTTATCTTCTTTTTTTACCACAAAGTGAATGATG CCTTTAATTTCTCTGTCTCTATGTCTCTGCCACCTGTTCACTATAACAAGGTCCTGGTCAATTAGTTTTGTCTGATGCTG GAATATTTGCAGTTCTAGTATAGACTCGTCTTCTTGGTCCCTTCCAAGGTGCAAAAGTGGCTTACTTGTAGAACCGAAGT AGTAGGATTTATGAAACAAAGTAGCAAACAAATAAACCAGGACAGTAGAATATCTAGCTTGCTTTTCTTCTTTTTCCCTA CTCTTGGAGTTTTCCTTCAAAGACAACATGTTCACCACAACTATTACCAATTCAACTTCTATGTCCGAGGGTGCCACTGT TTCTTCTGGTACAAGAGTTCAATACTTGAGTGGGCTAAATCAAGTGGTATCAACAATTTCTGATCCTCAGCAGCCTCGAA AGATCAAGAAAAAGAGAAGCCTTCCAGGAAATCCAGGTAATTGATAAAATATATCTTTGATTTCTATCATTTAATTTAAC CCTTCAATTGATAAGTTGTAGTTCTACGTATATGTTTGAATCAACATCTCTGATCTCACATAATTAACTCTGACACTTTT TGTGAATTTTTTGAAATCCTTCTTCAATTGATTTTGAAATCCAAAAACAATTTCTTGAGAGATGAATAGTTTCTGCATGT CATAATTGATTTTGAGGAAACCAAAGTTGATTCAAACATGTTATATGAAGCCATCACGTAAGATTTTCCTCATACTTGAT TTTAGAATCAATTTCAAAAGCAGGGGTGGACCTAAACCTAAGTATTGTAAAAATGGGGGGCGCCCCAAGAGAAAATGTTT GCTTGATAGAGTAGTATTCAAATCTCATTTTCACTCAAGCCCACAAACTTTGTTTATAGCACCTTTCAACTAGTAATTGC TAATGTTATTAAATGTGTTAAATTTTCGCCCACCTTACCCAACTTTTCTAGTTCCGCCCCTTTTAGAAGGATTTCCAAAC ATGCATCCATGTGTTGGCTTTGCTTTTGTAAAGTGTTTGATGTTATTCTTGTTTCAGACCCAGATGCTGAAATCATTGCT TTGTCTCCAAAGGCACTCCTAGCCACAAATAGATTTGTTTGTGAGATCTGCCTCAAGGGTTTCCAGAGAGATCAGAACCT CCAGCTTCATAGGAGGGGCCATAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTTAAAAAGAAAGCGTACG TGTGCCCTGAACCTTCTTGCGTTCACCACAATCCATCAAGGGCTCTGGGGGATCTTACAGGAATCAAGAAACATTATTGC AGGAAGCATGGAGAGAAGAAGTGGAAATGTGAGAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTC TAAAACTTGTGGTACTAAAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGTAAATTCTTCACTTACTCTTACAAC ATATATATATATATATATATATATATATATTGTTTTCTTACAATTTGAAAATGTTAGTTAATGCTTGTTTTCACCTATGT GCATGTCTCTTAACATGTGTTTGGATTGTCCTAACTCCTAAGTAATGGTTAAAAGTACTTTCATCAGTAGAAAGAAATTC CAAACAGAAACTTAATGTACCTGAAGGCTTCTCTTAATTTTGTTTCAGTGGATCTTTTTTGTTTTACATAAGAATGGTAA GCACTAGTTTGGTACAAAAGAATGGCAATGACAGGTAGCATGAAAGTAGGACACTGCAGCTAATACATGATTCTATTGCA AGAGAGATAGAAACTTTACTTGTCTCATATTGTAATTCTGAATCCAAAAACTGCCAATTAAATGAATTAGCGGCAGCAAC AAAGAAAGCACAATGCATGTATCTTTTGTTTTATCTAACTGTATAGTCTGTGAGTCAATAGCAATTTTGTTCTTTACTTT TTAAAAAATTAAAAAGAAAACACAAGTGCGTTTGTGAGGTTTCTCTTTCATAAATCTATTCCACAACCGAAAAACATGAG ACAATACTAAGAGGCTCCGAAATTACATTCAGTGGTCTAATATCTCCTAATAAATATTTCTCCATAGACATAATTAAACT CTTGACTAAATGTTTAAGGAGCTCAGTTATCAATTAATTAGTTATTAGTTGTGCTAGAATTGATTGATGCATGCAACTTG ATATATATACTACTATTTCTGCATTAATACTAAAGTTCAAATTTTACCTTAATAGGGTAATTTTAGGCTATAGAACAAAT TTATTATCGTGTCTGTCAGAGAGTGCTCAGTGTCTTCAAGAATATTTGCAGCATTCATGTGTTTGTGTTGTAAAAACTGC AGGAAAGACAGTTTCATCACTCACAGGGCATTCTGTGATGCATTGGCTGAAGAATCTGCAAAACTGTCAACAAACCAATT AACCACCACCAGCACAAACCCATTACTCCACTCTCTCATCCTCTTCCAAACCCAACAGAATTTGCAACAAAACCACCACT TCACCACCAGCTTCAGTCCCTGGTACATGGACTCACAACCACCACAACAAAACCCTAACCCCACCACACTCTCTTCTCCG TCACCCTTCGAGAACCTCCGCGTGGCGATGCAAGCGCACGCCACGTCAGCAGCGGCACACATGTCAGCCACTGCACTCCT TCAGAAGGCTGCAACCGTCGGTGCCACTGCCATCACGGGCCCAGATTCTTCTCTTTCTGCTGCTGCTGCTTGTGTCGGGG ATGAACAGCAAACGTCCATGATGAGTCACGTGACTGGACTCGGCAGGGGCGAGTTTGGGATGACGAGTCAGCTCGACTCG GTGGTGCAACTGCCGGAGTACATGGCGACTTTGAAGAGTGACCACCGTCTCACGAGGGACTTTCTGGGGCTGACGGAGGA TGCTGACGGCGGCGGCGGCATTGACATGAAGGGCGTGCTTAACTTCACTGGAGACATGCTTAACCACCATCAAGCTCATC ACTATCACCATCACCATCACCATCACCGCTTGTTGAAGCCCCAAGAACAAGGTTTTGAGTTCCTTAGGACAACCACTGCC CCGGAGACATGGGGGAATTGTTGACACCAACAAGAGAATAGTTCCAATCCATGAGGGTAAAATAGGAAAAATCATTTTCC TTAAGGGTTAACATCTTATCATGTTTTTTCCCCAGAGAGTGACATTTTTATTTTTCGATTTAAATTCAGTGCCATATGCT TTATTTCATATCTTTTCAATAAAGTTCTATTTCATTTTCAATTTAAA
CDS sequence (LotjaGi1g1v0715600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCACCACAACTATTACCAATTCAACTTCTATGTCCGAGGGTGCCACTGTTTCTTCTGGTACAAGAGTTCAATACTT GAGTGGGCTAAATCAAGTGGTATCAACAATTTCTGATCCTCAGCAGCCTCGAAAGATCAAGAAAAAGAGAAGCCTTCCAG GAAATCCAGACCCAGATGCTGAAATCATTGCTTTGTCTCCAAAGGCACTCCTAGCCACAAATAGATTTGTTTGTGAGATC TGCCTCAAGGGTTTCCAGAGAGATCAGAACCTCCAGCTTCATAGGAGGGGCCATAACCTCCCTTGGAAGCTGAAGCAAAG GAGCAGCAAAGAGGTTAAAAAGAAAGCGTACGTGTGCCCTGAACCTTCTTGCGTTCACCACAATCCATCAAGGGCTCTGG GGGATCTTACAGGAATCAAGAAACATTATTGCAGGAAGCATGGAGAGAAGAAGTGGAAATGTGAGAAGTGCTCAAAGATA TATGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACTTGTGGTACTAAAGAATATAGATGTGATTGTGGAACCCTTTT TTCCAGGAAAGACAGTTTCATCACTCACAGGGCATTCTGTGATGCATTGGCTGAAGAATCTGCAAAACTGTCAACAAACC AATTAACCACCACCAGCACAAACCCATTACTCCACTCTCTCATCCTCTTCCAAACCCAACAGAATTTGCAACAAAACCAC CACTTCACCACCAGCTTCAGTCCCTGGTACATGGACTCACAACCACCACAACAAAACCCTAACCCCACCACACTCTCTTC TCCGTCACCCTTCGAGAACCTCCGCGTGGCGATGCAAGCGCACGCCACGTCAGCAGCGGCACACATGTCAGCCACTGCAC TCCTTCAGAAGGCTGCAACCGTCGGTGCCACTGCCATCACGGGCCCAGATTCTTCTCTTTCTGCTGCTGCTGCTTGTGTC GGGGATGAACAGCAAACGTCCATGATGAGTCACGTGACTGGACTCGGCAGGGGCGAGTTTGGGATGACGAGTCAGCTCGA CTCGGTGGTGCAACTGCCGGAGTACATGGCGACTTTGAAGAGTGACCACCGTCTCACGAGGGACTTTCTGGGGCTGACGG AGGATGCTGACGGCGGCGGCGGCATTGACATGAAGGGCGTGCTTAACTTCACTGGAGACATGCTTAACCACCATCAAGCT CATCACTATCACCATCACCATCACCATCACCGCTTGTTGAAGCCCCAAGAACAAGGTTTTGAGTTCCTTAGGACAACCAC TGCCCCGGAGACATGGGGGAATTGTTGA
Protein sequence (LotjaGi1g1v0715600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFTTTITNSTSMSEGATVSSGTRVQYLSGLNQVVSTISDPQQPRKIKKKRSLPGNPDPDAEIIALSPKALLATNRFVCEI CLKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKI YAVQSDWKAHSKTCGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESAKLSTNQLTTTSTNPLLHSLILFQTQQNLQQNH HFTTSFSPWYMDSQPPQQNPNPTTLSSPSPFENLRVAMQAHATSAAAHMSATALLQKAATVGATAITGPDSSLSAAAACV GDEQQTSMMSHVTGLGRGEFGMTSQLDSVVQLPEYMATLKSDHRLTRDFLGLTEDADGGGGIDMKGVLNFTGDMLNHHQA HHYHHHHHHHRLLKPQEQGFEFLRTTTAPETWGNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 315 | 308 | 1.5E-151 | – | |
| PANTHER | 8 | 315 | 308 | 1.5E-151 | – | |
| MobiDBLite | 38 | 59 | 22 | - | – | |
| SUPERFAMILY | 75 | 172 | 98 | 1.07E-5 | ||
| SMART | 76 | 98 | 23 | 0.21 | ||
| ProSiteProfiles | 76 | 98 | 23 | 10.305 | ||
| ProSitePatterns | 78 | 98 | 21 | - | ||
| Gene3D | 109 | 201 | 93 | 3.0E-6 | – | |
| SMART | 117 | 147 | 31 | 170.0 | ||
| SMART | 152 | 172 | 21 | 170.0 | ||
| MobiDBLite | 247 | 268 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0715600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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