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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0715900 |
| Transcript ID | LotjaGi1g1v0715900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin canalization protein (DUF828); TAIR: AT3G63300.1 FORKED 1; Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|V7CW96|V7CW96_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0715900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128414676..128419828) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAACGGATAAAAGATGTCGCACAAATGTGTATGCCCATCCATCTTTTCCAAAGATCTATATAAAGGATGATGATGCT CTCCCTAGTTTCCCATTGATCCTTCACAGCAAAAACCTGCTTCACCACGTGGTGAGCTTTGATTTTGACCATTCCTAAGA CCTTTAGAGCTTTAGACCACTTTAACATTCTTTGAATCATCCAACAAATAAAACAAAAAAGGACTATATATACCTTCATG CTGCCACTTCTAAACATTCTTCAAGACTACCCCCACACATAATACATTATCACACCAGAAATGGATCCAAAGTTCACAAT CAACTGTCGGCGGCCGGAGCTCACTCCCGCCGGTGGCGGCACCCCTCTGCCGGAGAGTCCGAGAGTGCCAATGGAGTTTC TGTCAAGGTCATGGAGTGCCTCAGCTCTTGAGGTTTCCAAAGCTCTTGCATCTCAACCAACTCTTTCTTCATGCAAACCT CCAAATGCCACTATTCCTGAAGAAACCTGTTGCTCTGAAGAGTTCTCAACTATGCCAAAGAACCAGTTCTCTTTTGCTTC CTCTGCTACCTCACAGCTTGTCCTTGAACGCATTATGTCACAGTCCGCAAGAGAGGTCATTATACTAACTCCAACTACAT AATAACTCTGTTTTGTACCATGAGTCTTATAAAGCATTCATCTTTATCACAACAATAAAGGCACACACATGCTACATTTT AACTGTAAAATGATATCTGAGATGAGATCACTTGTTGCATTGTGATCTTCATATTTCTGAAAGAATTTATATTGTTATAA TGTAGCAGGAAGTGTCACCATTAACTTCAGGAAGGTTATCTCACAGCAGTGAGCCTTTGAATGGTGGTGGTTCATTAACG GGAACAGATAGCCCACCAATTTCTCCTTCAGAAGAATTTGACGATGTTGTCAAGGTTATATCCCTCTCTATTCCTGCTTC CTTGTCTCTTTTTTTTCCTTGAATGATCCAAACCAATTAATATTCATTTTTCTTTCCTTGGAATCAATTCTAGTACTCAT AAGCTACTATAACTTTAAAATCTATTGTAGAATAATTTTCAAACATGCACTTAGTGTTTTGACAAGTTAAAAACTACTTT GAAAAGCCACAAAGAAATGAATAAATGTAAAAGGTTTTGCAACCAAACTTAAGGGTCCCATGTGGTCCATCTAGGGTGGT GATTCACCTGCTGCATATATAGCTCATATTAGCTCGTATGGTAAGGAAGCATGGAAGAAAAGCCTCTATTGGTACCTGCA AAGATAAGTTGTTGGAACTTGGTGCTTCAGCTTGTGGTGAGAGAGTTTATTAACTTAGGAATTTTATCAACCCCACTCCT CTGCACACAAAAAAGAGAGATAGAAAAGGAAAATGGGAACTAGGCTCTATCTAAAGCTTAGTCTAGAGTTTATTAACTTA TGAGAAGAAAGTTGAAACAGCTTCATAATGTTAAATCAATACAAGTACAACATGACAAAACTGATATTTTACAAATGAAA AGAAAAATCAAAATATGCTGAGTTTGACATCATGGTTACCATGTAAAACTCATAGTAATGCTTATCCTTTTTTTATGTAG TTTTTTCGGGCAAACAATTCAATTCTCCCGTTGTTCAATGGTGGAAGAGCAAGTGCTGCTATTGGCAATGGCACAGCTAG CTCAGGACCTAAAACTGTTGGAAGATGGTTGAAAGACCGAAGAGAAAAGAAGAAGGAAGAAAATAGAACCCACAATGCTC AGCTGCATGCTACAATTTCAGTGGCTGCAGTAGCTGCTTCTGTAGCAGCCATGGCGGCTGCAACATCAGCCTCATCTACG CCCAGCAAGGATGAGAAGATGGCCAAGACTGACATGGCTGTGGCTTCTGCAGCCACGTTGGTCGCGGCGCAGTGTGTAGA GGCTGCTGAAGCCATGGGAGCTGAGCGTGACCACCTTGCTTCTGTGGTCAGCTCAGCGGTAAACGTCCGTTCTCATGATG ATATCACCACTCTCACAGCTGCAGCTGCCACAGGTATAATTTTTTTCCTGTCATTATGGATTGACGAATTCTAAAATTTG AATGATCTTTGCAAAAAATTGTTGGCCTTAATCCTTCAAAAGGGTTCTGCAATGGGAAGTCTCATAATCATTCTAGGGAG AAGCTACAAAGTGCAGATTCTAGAGTCACCGTGCTTTGGATTGTGTGCAACCACCAATCCAAACATGCAGCTAGTCTGAA TAGTTTAAGCATATGTTTGGATCCACTTCTAATCCTACTAATCTACAAAAGCTATTTCTAACTGTTTCTTATTTTCCTTT GAAGACACATAAAACAAGCTATTTGAATTCATTTTTAATCCTCTCAAAATCATTTTTCCCTCCATAAAAGCTACTTCTAG CTTCTCACATAATTAATAACCCTAAGCGTGAAAGCCTAAAGTTTCCAAACACACATAGCGTGTTTGGTTCTGCAATGGGA AGTGCCATAATCATTTATGAGAAGAAGCTATAAAGTATAGAAATTACAAAATGTGGCACTGGTCTTCAGGTGCTTCGGAT TGTCTCACCACCAATTCGAACATGCTATTAGTCTCTCCATACCATGTGGGTAAAATGTGTCATGTTCTTTACATGAGTAG TAGCTAGTGAGAGATAGTAAGTCCTTTTTTTCTGTCCTTTCTATTGACTGTTTATGTATATGGTGTCCTTCATATGCAGC TCTGAGAGGAGCAGCAACCTTAAAAGCAAGAGCTTTGAAGGAAGTATGGAACATTGCCGCAGTGACACCACTAGAGAAAG GCATTGGGGGGATTAACATATGTGTGAAAGGAAATAACAGCAACACCAGCAATACCAGCACAAGTGACAGTGGAGAAATA ATCCATGCAGATAATTTTTTAGGATCTTGCAGCCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAACGCACCCGTAA AGGTAATATTATTACGTAAAAATGCTGCAATCAAAACTTCCTCTCGTTTGCAAAATGATTAAACCTCATTTCGGTGGTTA CTACAGGTGATCTCCACTGGAAAGTAGTTTCTGTTTATATACACAGAACAGGCCAGGTAACTTCTCTTTCAAGAATTCAC AGGAAATGGAATTGGCTTTGTATGCCCATTTAATCACAAGGCTTGCAAACATTTCAGGTAATGCTGAAAATGAAGAGCAA ACGCATTGCTGGAACCATTACCAAAAAGACAAAGAGTAAGCTAGCTTCCATTACCTTTGACAACTTGGTTTTGTTAGTGT CAACTTAAAGGGTATCTAACCATGAATAATGATAGCTGATAACTGATGTTCTTGAATACACAGTTGTTGTGTTAGACGTG TGCAAAGATCTACCAGCATGGCCAGGAAGGCACCTGTTTGATGATGGAGAAAAGCGACGCTACTTTGGATTGAAGACAGA CTCAAGGGGGGTTGTGGAGTTCGAGTGTAGAAATCAAAGAGAATATGATATCTGGACTCAAGGGGTTTCAAGGCTCCTCA CCATTGTTGCACAAAGACAAATCAAGAACTGAACCTCTCACCTTGTTTACTAATTACTACCAACAAAGATCACTAGCTAA TGCATTGCTGGCTACTTAACTAAGTTCAATCTACATGCATTGAGAGATGTATTCCGCACTCGTGTTTAACTTTAACCTCA CAATCATCTGTGTCAAGTACTCAAATGGAATTTTCATCTTCAGCAAAGAAAAAGAATACCATGCTATTTAAACTAGTACA AATGTAACCCCTTGGCAAAGAACATGAATGCTTGGCATCTATATCATATGAAATTTAAAAAATCTTTATAATCAAACAAA CCATTGCACTTAAATCACCACAGACACATTGTAGATAATTCAGAGCCGAACAGACGAAAGGTTGACAGTAGTAAATTTTG TTTCCAACTCTGCAAAATTCCAGCAGGGGGCAATTACATTGAATTATAACTAGATGAGAACTATTTTCAATAATGTTGTA AGTAAGGAATATATGCAGCTGCAATTATATGCCCATTGGTCTAACTATACAGGGGTATGTTCTTAGTGAAGCTATGCTAA GCTACCAAACTAAGTGATTACTTCCGTTCCAACGTGTATCCGAACACAGTTATCCATACACATTGTCAATCTGCAGCTCT AAAAACAGTGACCAGAGAGAGGAAGAGGTTTATGATGTCTAGATAGAGGCAGACTGAAGCCCAGATGTAATCATCATAGG AGAACCTCTTGATCAGGTTGTCTGTATCATAGACGATGTAGCCACAAAATATAATTGCGGCCAGGCAACCATAGATCATG TGTCCCAACTTACCAAGTGGGAAGAGAATCTGCAAGAAAAGAATCACAAAATAGTAAGAATACAAATGGACAATAAAACA GGATCCCAAAACAATTACGGGGGCTACCTGGCCTAATAATTCATGAACAATAATCAAGTAGGATCGCAGAACCTAAGTAC CTGAATCAGGGCAAAGACAATAAGTACTAGTAGTGCTCCAAACAAGAAGGGGCCCAAAAAGCTGAAATCATGACCTCTCC TTGCGGCCCAAAATGTGTAGAGTGTTAGGCTGATCACCACCACAGTAGTCAATATGAAAGCTTCCAGAATCACTTTCCCT GTGCCATCCAGTTTCCAGCCTCATTAAAAACAAGTTTGGCAATTCTCACTCAAAAATGAAACCTATACCTATGCTTCACA AGCCAACATAATGCCTAGGAAAGAAAATAGCATTGGTCTATTAAAATCGAAGAGCCTAAAATTAAAGTAATCCCAAAAAA AGGGTAACAACAATCTGCTCGACATCCTTCAATTTCTGTATTGGAATTCAGAATGGCGCATACTCCGGAGCACGTTACAT GCACAAGTTTGTATCTTTCATTTAAAATTATTCTAGTAAGATTTGTAGCATGCTTTGATCGAATCAATTCTGTTATCCAG AAGCTACTCACAGAATCAGACTTATTAGAATTAATTGATTTTGGCTCTATAATCAATTATAGAAGAAATTTCAAGACATC ATCCGCCTATGTCACTTGAAACATTATCAGAGTTTAGCAAATAGAGCAAATCAAAAAAAGCATGAAGTATGTTTTTTTGA TTTTGTTATCATGTTCAAAATCATTGATTAACA
CDS sequence (LotjaGi1g1v0715900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAAAGTTCACAATCAACTGTCGGCGGCCGGAGCTCACTCCCGCCGGTGGCGGCACCCCTCTGCCGGAGAGTCC GAGAGTGCCAATGGAGTTTCTGTCAAGGTCATGGAGTGCCTCAGCTCTTGAGGTTTCCAAAGCTCTTGCATCTCAACCAA CTCTTTCTTCATGCAAACCTCCAAATGCCACTATTCCTGAAGAAACCTGTTGCTCTGAAGAGTTCTCAACTATGCCAAAG AACCAGTTCTCTTTTGCTTCCTCTGCTACCTCACAGCTTGTCCTTGAACGCATTATGTCACAGTCCGCAAGAGAGCAGGA AGTGTCACCATTAACTTCAGGAAGGTTATCTCACAGCAGTGAGCCTTTGAATGGTGGTGGTTCATTAACGGGAACAGATA GCCCACCAATTTCTCCTTCAGAAGAATTTGACGATGTTGTCAAGTTTTTTCGGGCAAACAATTCAATTCTCCCGTTGTTC AATGGTGGAAGAGCAAGTGCTGCTATTGGCAATGGCACAGCTAGCTCAGGACCTAAAACTGTTGGAAGATGGTTGAAAGA CCGAAGAGAAAAGAAGAAGGAAGAAAATAGAACCCACAATGCTCAGCTGCATGCTACAATTTCAGTGGCTGCAGTAGCTG CTTCTGTAGCAGCCATGGCGGCTGCAACATCAGCCTCATCTACGCCCAGCAAGGATGAGAAGATGGCCAAGACTGACATG GCTGTGGCTTCTGCAGCCACGTTGGTCGCGGCGCAGTGTGTAGAGGCTGCTGAAGCCATGGGAGCTGAGCGTGACCACCT TGCTTCTGTGGTCAGCTCAGCGGTAAACGTCCGTTCTCATGATGATATCACCACTCTCACAGCTGCAGCTGCCACAGCTC TGAGAGGAGCAGCAACCTTAAAAGCAAGAGCTTTGAAGGAAGTATGGAACATTGCCGCAGTGACACCACTAGAGAAAGGC ATTGGGGGGATTAACATATGTGTGAAAGGAAATAACAGCAACACCAGCAATACCAGCACAAGTGACAGTGGAGAAATAAT CCATGCAGATAATTTTTTAGGATCTTGCAGCCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAACGCACCCGTAAAG GTGATCTCCACTGGAAAGTAGTTTCTGTTTATATACACAGAACAGGCCAGGTAATGCTGAAAATGAAGAGCAAACGCATT GCTGGAACCATTACCAAAAAGACAAAGATTGTTGTGTTAGACGTGTGCAAAGATCTACCAGCATGGCCAGGAAGGCACCT GTTTGATGATGGAGAAAAGCGACGCTACTTTGGATTGAAGACAGACTCAAGGGGGGTTGTGGAGTTCGAGTGTAGAAATC AAAGAGAATATGATATCTGGACTCAAGGGGTTTCAAGGCTCCTCACCATTGTTGCACAAAGACAAATCAAGAACTGA
Protein sequence (LotjaGi1g1v0715900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPKFTINCRRPELTPAGGGTPLPESPRVPMEFLSRSWSASALEVSKALASQPTLSSCKPPNATIPEETCCSEEFSTMPK NQFSFASSATSQLVLERIMSQSAREQEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSEEFDDVVKFFRANNSILPLF NGGRASAAIGNGTASSGPKTVGRWLKDRREKKKEENRTHNAQLHATISVAAVAASVAAMAAATSASSTPSKDEKMAKTDM AVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIAAVTPLEKG IGGINICVKGNNSNTSNTSTSDSGEIIHADNFLGSCSQELLAKGSELLKRTRKGDLHWKVVSVYIHRTGQVMLKMKSKRI AGTITKKTKIVVLDVCKDLPAWPGRHLFDDGEKRRYFGLKTDSRGVVEFECRNQREYDIWTQGVSRLLTIVAQRQIKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 476 | 476 | 6.0E-268 | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 476 | 476 | 6.0E-268 | ||
| Pfam | 24 | 320 | 297 | 1.8E-107 | ||
| MobiDBLite | 104 | 140 | 37 | - | – | |
| MobiDBLite | 104 | 137 | 34 | - | – | |
| Pfam | 366 | 471 | 106 | 2.5E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0715900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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