Transcript — View — Lotus Base

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LotjaGi1g1v0717200.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0717200
Transcript ID	LotjaGi1g1v0717200.1
Related isoforms 1	LotjaGi1g1v0717200.2
Lotus japonicus genome version	Gifu v1.2
Description	senescence-associated-like protein (DUF581); TAIR: AT3G63210.1 mediator of aba-regulated dormancy protein (DUF581); Swiss-Prot: sp\|Q8LGS1\|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr\|A0A0S3RY04\|A0A0S3RY04_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0717200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:128544662..128548005) extracted from Lotus japonicus Gifu genome v1.2.

AAGGTGTTGTTGTTACTATGTACATGAATCCGGACCCATCTTATCTTATTTATGATGATGTCATAACAGTACCAAACAGT GAGAGTAAAAATAAAATAATTGCATATACAGATATCAAATTAAATCTCTTTATATTAAGCAATATAAAAAAAATATCTTA TATGGAGACAAAAATATATTGACATGTAAAGTAATAACGTTTGATTTTCATGCACACGATTCCTTTGCTTATCCTCCATT TAAACACTTAACTGGCATATGAATCCAAACACGTTTCTCTCTCTCTCCCACAACTCAAAGCTTCTTTCCTTTTCTTCTTT GCTTGATTGCTCAATGCCTCTATAAACAGTTGCATACTTTGGAAGGTTAGAACTTAGAACAGAAACGAAAAACAGAATAA ATTAGTGATAGGATGGAAGAGGGTGAAGTTGCACTTCCTTGGTAACAAAAACCAAACCAAGCAAAGTAGTTCAATTTTGA AGTGGAATACCAAAACTGATTACATCTCTTTTTGAACGCCAACAGTGCATAGCAGATCAAGTTTCAATGGCAAAGCTGCT ACTAATCACATGTCTTTCTTTACTTTTTCTGATTCAAGAGAATTGAAAAAGGACCAGGTGCCAAATTCATTTTATCTGAA AGTTTCAGAGAGATTCTCTCTGTTAGATCAGGAAAAAGGACCTTGCTTCTGAATCACAAAAGTGTTTATGAAAATAGCAA CCTGCATCTACCAGAGTGGTTTGTTTGAAATACCACTTTTCTAGTCTATAGCTATTTTGGGTGAGTCTTTACTTTTTACT CCCTCATCATGTTTATTCTTCTGCATCATTTGTAGTTGTAGTATTCACTATTTTTTCCTAGTCAGTTTCAACACAGATTA AACAACACTTATTGAAATTTATCTACTAGAAAAAATACCAAATAAACTTCAGCATGTGTTCTTTGGTAGGCATCTAAGCA GACTCTAATTACTCATTTGGTTTACCTGCTAATTTTTCTTTTGGGATCACAGAAGCTAGAGGGTCCTTATGCTGCTGAGG AACAGATCAAGGGCAGTGACCAAGCCACCTTTGATGGCTGATCACAGTTCCAACCCTTCTCCCAATCAAAATTGTGCTAA AACCATTCCATCTCTATTTGGCTCACCAAAGTTTAGAGACTTCACCAACAAGTGTCTCTCTGCAGGAACTGATGCTTTGA GAAGCCCAACTTCAATTCTTGACACCAGATCCTTTATACCCTCTTTTGGTTTTGGAAATCCATTCTCACATGACAAAAGT ACCCAAACTTTTCCCCTCAAAACCTCAGAAACCAGAAGCTCCATGGTCTCAAAAGGCATTGGCCTTGCTCTTGTGGGTGA TTTCAAAGATGAGCTAGTTGATGAGAAAAATTCTGCTGAACCCATCAAAGGAAGTGTCTTTCTTGGAAAGCAGCTCAGAG TGAAAATCCCACCCCTGGAATATCCTTCATCATTCTCTCCATCCAAATCTCAAACTCATGGTGGTCATGATTTTGGAACC AAAACCAAGGCCTCACAACAAAACACTGCAACTCAGGATTCTCCAAGTGTAGTTGTTACCAGTGTTCTGTCTCTGAGTGA GATGGAGCTTTCTGAGGAATACACATGTGTGATATCCCATGGACCTACCCCAAGAACCACCCACATATTCAACAATTCCA TTGTGGAGAGTTACTATTCTCTGCCCCCAGACTCTCCCTCTTCTTCTTCTTCTGTGAACTTCCTCAGCTTCTGTTACACT TGCAAGAAACATCTTGAGCAGACAAAAGACATCTTTATTTATGGGTGAGTACCTTTTCCTAGTTCCTACCTTTGCAATTT GCATTGTGGATATTTGAGACTTCCTAAAGCACAAGACAACAAAAAAACTTTGAAGTACTCCATGTTCTGTTTATCACTAT CCCAATTTGGACACTATTTTTTATTCTTTTCAATATGTGTAAGTTGTTAACTAGTGAGATTTCTTTATTTTGCAGAGGAG AGAAAGCTTTCTGCAGTAGAGAATGCCGCCACAGAGAAATGGTGTTAGATGGTGTAGAATGTTTAGATTTTGAAATTAAT GACTATTTTTGACGTCAGTGTCCCTTCACTTGCGTGCTTTACATGCACCATGGCTGCAACGTACGTTTGCATTTTGATGA GGATAATAACCAGAAACGCAGAAAGTCAAATCAAAGTTTTCCATTCTTGGTTATGATATCATGACTTTGTAGAATATTTC GTTGTAATCAGTATGGTCTTTTTTGTATTTTTTCTCTTTTTGAAGTCTATTTTGTTTTTAGTATGTTTGGATCAGCTTGT TTTTCGTTTTTGATTGCGGTCCACAACGGCAGTTGCAGTCGCAAAGTAATTGAGTTTGGAGTCCCCATATTAGCATTGCA ACCGCAATTAGAGTTGATGCAGTCGCATTTGTCGCGAGCTTTTTCCTATAATTGACTCTGGCTGTTCCAAACTTGTAACT TTTTTTTCTCCTCTTCCCTGCAAATAGAGATAAGAGAGGATGTAGAGTTCATTATTCCAAGTGATGACTACAAATTTGAT TGCTTCTGGTTTTGGTCCCCATTGTTTTCGGGTGAAGTGAGTGTGATTGAAAGGAGTGCTTTTCTTTTTTTCTTTCTTCT CTGAGTTGATGATAATGATGGTGTTGCTTATTGGTGTAGATGGGGACCGGTTAATTATTTCTCATCAAAGATTCCCTCAC TGCATCATGTACTCTATTATTATCCTTGGCCTTGCTCGGTTGAGAAAAGAATTCAGCAAAATCATTATAATACTCTAAAA ACTGATAATGACAGAAAAATATACATTTGTTAAAGGTCCTTTTCCTTACCCATTACACCATTATCCAATTATTTGAATAT TCAGGTTATGCTTAGAAACTTTGATACGTATAATAATAGAGATAGAGAATCCTCAAAATTTCAAACCTTGGGTTAAAAGC GATTTGTGATTAATTCTATCACCAAAATTCTTATTCCACGTCCTTACAACTTAGTCCTAATCCATTACAAAAATAATTGA TGAATAAACTAACTAATTTGTGGCGGTTAAAAACGGCTAAATTGCAAATGTTGTTAGTGTTCGTCAAAAGCAAAGTACTC AAATGACGACCCTATCCATTACAGTAATGCCAACAAACTAGGTACGTGTTCTGATCAGACATATGTTGGTAACAAAAAGG TATAGAATAACTGGAATCATCATTAAAAGGAACAAGCAGAAGTAAATGGACTTGAAAAGCCAAAAGATTTATGTATCAAA AAGAAAAAAAGCCAAAGTGTTATTGTAAAAGTGCCTCTACATTGTGACAAGCCTTATAGTGCGC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0717200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGCTGAGGAACAGATCAAGGGCAGTGACCAAGCCACCTTTGATGGCTGATCACAGTTCCAACCCTTCTCCCAATCA AAATTGTGCTAAAACCATTCCATCTCTATTTGGCTCACCAAAGTTTAGAGACTTCACCAACAAGTGTCTCTCTGCAGGAA CTGATGCTTTGAGAAGCCCAACTTCAATTCTTGACACCAGATCCTTTATACCCTCTTTTGGTTTTGGAAATCCATTCTCA CATGACAAAAGTACCCAAACTTTTCCCCTCAAAACCTCAGAAACCAGAAGCTCCATGGTCTCAAAAGGCATTGGCCTTGC TCTTGTGGGTGATTTCAAAGATGAGCTAGTTGATGAGAAAAATTCTGCTGAACCCATCAAAGGAAGTGTCTTTCTTGGAA AGCAGCTCAGAGTGAAAATCCCACCCCTGGAATATCCTTCATCATTCTCTCCATCCAAATCTCAAACTCATGGTGGTCAT GATTTTGGAACCAAAACCAAGGCCTCACAACAAAACACTGCAACTCAGGATTCTCCAAGTGTAGTTGTTACCAGTGTTCT GTCTCTGAGTGAGATGGAGCTTTCTGAGGAATACACATGTGTGATATCCCATGGACCTACCCCAAGAACCACCCACATAT TCAACAATTCCATTGTGGAGAGTTACTATTCTCTGCCCCCAGACTCTCCCTCTTCTTCTTCTTCTGTGAACTTCCTCAGC TTCTGTTACACTTGCAAGAAACATCTTGAGCAGACAAAAGACATCTTTATTTATGGAGGAGAGAAAGCTTTCTGCAGTAG AGAATGCCGCCACAGAGAAATGGTGTTAGATGGTGTAGAATGTTTAGATTTTGAAATTAATGACTATTTTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0717200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLLRNRSRAVTKPPLMADHSSNPSPNQNCAKTIPSLFGSPKFRDFTNKCLSAGTDALRSPTSILDTRSFIPSFGFGNPFS HDKSTQTFPLKTSETRSSMVSKGIGLALVGDFKDELVDEKNSAEPIKGSVFLGKQLRVKIPPLEYPSSFSPSKSQTHGGH DFGTKTKASQQNTATQDSPSVVVTSVLSLSEMELSEEYTCVISHGPTPRTTHIFNNSIVESYYSLPPDSPSSSSSVNFLS FCYTCKKHLEQTKDIFIYGGEKAFCSRECRHREMVLDGVECLDFEINDYF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	27	27	-	–
SignalP_GRAM_POSITIVE	SignalP-TM View details on SignalP-TM Search for proteins/transripts with this domain	1	17	17	-	–
PANTHER	PTHR46443 View details on PTHR46443 Search for proteins/transripts with this domain View external data on PTHR46443	2	284	283	8.5E-104	–
PANTHER	PTHR46443:SF10 View details on PTHR46443:SF10 Search for proteins/transripts with this domain View external data on PTHR46443:SF10	2	284	283	8.5E-104	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	147	179	33	-	–
Pfam	PF04570 View details on PF04570 Search for proteins/transripts with this domain View external data on PF04570	232	277	46	1.9E-20	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51795 View details on PS51795 Search for proteins/transripts with this domain View external data on PS51795	237	281	45	21.204	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0717200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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