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LotjaGi1g1v0717500.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0717500
Transcript ID	LotjaGi1g1v0717500.1
Lotus japonicus genome version	Gifu v1.2
Description	Transcription repressor ofp12; TAIR: AT1G05420.1 ovate family protein 12; Swiss-Prot: sp\|F4I8R6\|OFP12_ARATH Transcription repressor OFP12; TrEMBL-Plants: tr\|A0A072U262\|A0A072U262_MEDTR Ovate transcriptional repressor; Found in the gene: LotjaGi1g1v0717500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:128591104..128592912) extracted from Lotus japonicus Gifu genome v1.2.

GTTATTTCAAGGATAATTGAACTTTATGAAATAAAAAGTTTCCGTGCAATAAGCCTATAACTTTTTGATCAGCTAGATAC ACTTTCCCACTTCAGTGTGTAGGCAAATCACAACCTCCACTATTATATATACACACACAACAACAACAATCAAAATCAAC CCCAAGAGCTACCTTCCTTCATTTCACCACCATGCCAACCACAATGCAGGAATCAGAATCAGATGTAACAAGAAAAAGAA GAAGCAACTATCATAATCTCAGACGCCTCAACCTATGTTTCTCCTCCTCAACTTTCACACAACCCCAAACTCATCCTATA ACTTCTTCTTCTTCTTCTTCTTCTTCCCTTCCTCAACAACAACAACATCACAACCGTCCATCACCAACCACCAATGCAAC CTCATCAATCATGATCAACAACTTCAACACCACTTTCTACCACCACCACCACCACACCTCCTCCTCTTCCTCCTCCAACC AAATCGAACCGGAGCCCGAATCCAAACCAGCCGACTTCGCCACCGCCTTCGCCTCCCAACGCTTCTTCTTCTCCTCCCCC GGCCGCTCCAACTCCATCATCGAACGCGCCAACACCAACTCCACCGCCGCCAGCCGCTGTAACAGCAACAAATCCAGGCA GATTCTGGACGGGAGCGTGGCGGTGCCAACCTACTCGCCGGACCCTTACGCGGACTTCCTGAGGTCCATGCAGGAGATGG TGGAGGCGCGTCCGGAGCTGTTGTTGACGGAGGAGGAGTCCAGCTGGGAAGCGTTGCACGAGCTTCTTCTCTGCTATCTT GCGCTCAACCAGAAGAGCACTCACAAGTTCATTCTTCGTGCTTTTTCTGATCTTCTCGTCACTGTCATGTCATTCTCTTC TCCTTCTTCTTCTCCGCCGCCGCCGCCGCCGCCAAATTTCAATCTAAGCGGTGGTGGCGGTGGGTGTAAGAAATCTTAGA TAGGTATGTATGTGCAACTTGATAAATTGTAGATGTGGGTGCCAGACTGCTAGTTAATAATTGTCTCATTAATTACGAGT AAATTGTTGATTAATTAAACAAATGGCATGCAATTCTAATGGTAAAATATGTTCTTACTATACCCACTAATTTGGACAAA TTAAAGTGAGTCTTAATTAATTTGTTTGTAGGAACTGTCAGTATCGAGACAAAGTTGCGTATTATGAAATGCCATATAGA CAATTGTTTAGGGGAAAAAAAATGAGCACTTATATAGAATACTAGTATTTTTACCCGTGCGATGCACGGGGTTATTCATT TTTGTTTATCGTGTATATTTTTTTCTTTCTAAATTTGTGTTATTTTTATGTTTATTAAAATAAAATTTATTATGAATTAA AAGAATAAAATTAATTTTAGACATCAAACATAAATTTGTATCTTTTCAAGTGATGAATGTATTGTTTTTATTTTGTAGAA GCAATATAATTTTATTTTTTATGGATTTTGTACTTACTTATTTTTGTATGAGCTTTGATTAAAAATGTACTCACCACTAC GTTGCATAATAAGTCTTTGTTTATGTAAAATACCACCACTTAAATACTCTCAAGTTTCTTTCCAAACAAATTATGCCCTT AAAAATTGATATGATAAGAGTAAAGTAGCAAAAAGTCTTCTAAGATTGTTTGCAGTACTGCAATTCAAAGCTTCTATTAC TTCATCAATGTAATATTTATCATCGTTTAGTAAACTCATTATATAGCACACGTTCTTGAATGTGTCATATGTAACTTCAT ATACTTTTCTTATGTCTGCAAATGAATGAGCCCTTCTGTAATATTTAGC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0717500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCAACCACAATGCAGGAATCAGAATCAGATGTAACAAGAAAAAGAAGAAGCAACTATCATAATCTCAGACGCCTCAA CCTATGTTTCTCCTCCTCAACTTTCACACAACCCCAAACTCATCCTATAACTTCTTCTTCTTCTTCTTCTTCTTCCCTTC CTCAACAACAACAACATCACAACCGTCCATCACCAACCACCAATGCAACCTCATCAATCATGATCAACAACTTCAACACC ACTTTCTACCACCACCACCACCACACCTCCTCCTCTTCCTCCTCCAACCAAATCGAACCGGAGCCCGAATCCAAACCAGC CGACTTCGCCACCGCCTTCGCCTCCCAACGCTTCTTCTTCTCCTCCCCCGGCCGCTCCAACTCCATCATCGAACGCGCCA ACACCAACTCCACCGCCGCCAGCCGCTGTAACAGCAACAAATCCAGGCAGATTCTGGACGGGAGCGTGGCGGTGCCAACC TACTCGCCGGACCCTTACGCGGACTTCCTGAGGTCCATGCAGGAGATGGTGGAGGCGCGTCCGGAGCTGTTGTTGACGGA GGAGGAGTCCAGCTGGGAAGCGTTGCACGAGCTTCTTCTCTGCTATCTTGCGCTCAACCAGAAGAGCACTCACAAGTTCA TTCTTCGTGCTTTTTCTGATCTTCTCGTCACTGTCATGTCATTCTCTTCTCCTTCTTCTTCTCCGCCGCCGCCGCCGCCG CCAAATTTCAATCTAAGCGGTGGTGGCGGTGGGTGTAAGAAATCTTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0717500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPTTMQESESDVTRKRRSNYHNLRRLNLCFSSSTFTQPQTHPITSSSSSSSSLPQQQQHHNRPSPTTNATSSIMINNFNT TFYHHHHHTSSSSSSNQIEPEPESKPADFATAFASQRFFFSSPGRSNSIIERANTNSTAASRCNSNKSRQILDGSVAVPT YSPDPYADFLRSMQEMVEARPELLLTEEESSWEALHELLLCYLALNQKSTHKFILRAFSDLLVTVMSFSSPSSSPPPPPP PNFNLSGGGGGCKKS

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33057:SF21 View details on PTHR33057:SF21 Search for proteins/transripts with this domain View external data on PTHR33057:SF21	21	230	210	2.3E-66	–
PANTHER	PTHR33057 View details on PTHR33057 Search for proteins/transripts with this domain View external data on PTHR33057	21	230	210	2.3E-66	IPR038933 Show description in modal box View details on IPR038933 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	34	71	38	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	84	105	22	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	84	101	18	-	–
TIGRFAM	TIGR01568 View details on TIGR01568 Search for proteins/transripts with this domain View external data on TIGR01568	156	225	70	1.1E-25	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51754 View details on PS51754 Search for proteins/transripts with this domain View external data on PS51754	158	224	67	17.186	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04844 View details on PF04844 Search for proteins/transripts with this domain View external data on PF04844	162	225	64	4.2E-24	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	229	255	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0045892 View details of GO:0045892 AmiGO InterPro QuickGO	Biological process	Negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0006355 View details of GO:0010629 View details of GO:1903507 View details of GO:2000113 Negatively regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0717500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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