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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0721900 |
| Transcript ID | LotjaGi1g1v0721900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT3G57670.1 C2H2-type zinc finger family protein; Swiss-Prot: sp|Q9SVY1|ZWIP2_ARATH Zinc finger protein WIP2; TrEMBL-Plants: tr|K7KEY8|K7KEY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0721900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129299682..129302740) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCTTTACTACTTTCCCCATGTCTGTCTGATACCGCAATCTCTTTCACTCTCTCTTTCTCTCTCTCCACCGTCCACT CCCTTCAGCCATCTTGTACTCTCTCCATCTCTCTATAAAAGCAAACTCAACTAGCCATAAACTGTTCCCACTCTCTCATC ATCTTACCTTTTTCATTCTCACCCAGCTAGCCATGGCTGATCCCTACTCCAATTTCTTCTCATCACCTGGTTTCTTCCAC TTCAACCCCATCCACCACCACCACCACCATTTCCCATCTCCAAACCCATCTCCACACCACCCTCATGTCCACAACTTTTT CCACCACCACCACCAGATAACCACTGCTAATGCTTCTTCTTCTTCCTCTTCACCTCCTTCTCCTCCTCTAAGAGTGGAGC TCCCCCTCTTGGGCCTAAGTCCAGCAAAGCAAGAAGAATATAATGAAGAGCAAGAACAACAAGAAGATCACCTTTCCAAA GAGGAGGAGCTGGAAGAAGAAGATCAAGAAGATGGAACTGTCACTGTTGCACTCCACATAGGTTTACCAAGCCCTAGTGC TGCTGAAATTGCCTCTGTGATGTCCTCAAATTCTTCAGAGATCTCTGATAATCATAAAGATCATGTTATGGATGGTGAGG ATGATTCTGGGCTCATGAGTACCAACAGGCTCAACAAGGGCCAGTACTGGATCCCTACACCTTCTCAGATTCTCATTGGT CCTACCCAGTTTTCTTGCCCTGTTTGCTGCAAAACATTCAACAGATACAACAACATGCAGGTATGGAAGAGGTTACTCCC AGTTTGTTGCCTTTGATTCATTCTGATGTACTGGCTTCTGCGCCTTCTCGAAAACAAACAAGGCCTTAGCTTATGCCTCC TTCTCTTCTCTTCTCTTTTGTTCTTCTTCTTCCACTTTCCTTTCCAATTCAAGGGTCAAAAGAAAAAAAAATTAAAAAAT TCCTTTGCTTCTGCTAGCTTCCACTTTCTGTCCACAACTTTCTTCGCTGATTTGAACCATTAACGGTTCTCTGATGCTTG AGTGAAAAGAAAGAGGAAAAGAAAAGTTTTGTTGTTAATTTATGCTACTTGTTCTCTTTCTCTTCTTCTTCTTCTTCTCC TTTTTTTTTTCTTCATCTCCTTATATTTTTATTTGAAGTTCTTTTCCCAAGGTGATCTATCTTCAAGTTATAATTTTGTT TAAATTGTTTTCTGCATGCTATAAGCATGGTTTATATTTGGTTAAATAATCAACCAACACTTTTTCTGATTCAGCCTGTG AGAGAGTACTGGGATTTCAGTACCTTGCTACTACCTTTCCTTTTCGTTGATTAAACTACTCAACCAATGTTCCTTATGCC TTTACTACATTGAAGTCTGTGCTTCTTACACGCTTTGGCAGCTCTATGGAACTGAAAATCTTGCAGTGTTTCTTCCAGAT TGCACAGATAATGATAGAAAGCCTACACCATAATTTTTAGTTTCTCTGTGTGTTCCTTTGGGTCTTAATCCAAACATGTT CACAACCTGAAAGTCCCTATAGGCATAGCTACCTCTTCCAAATTAGCCTTTTTTCCATTGAAAACATTGCAAACAAAGTA GGAAAAAGAACAAGCACTCATCTAAACTCCATTTCCTTTTTGTTCCTTAAAAGCAGCTTCTCAGTTTCACCAGCTATAGT ACCAGCTACACTCCTACTCCTACACTCACAAATTAAATCATTGCACCTTAGTGATTACACATTAACATCATGTTACAAAT TCACTATAGCATATTCTGCTTAACTTCTCTTTCATTATAATTGATTTTGGAACTCAGTAACTAGGGACAAAATCATTTAC TTAGAATTAATTTTAGCTTTAGAATCAATTTTAAAAGGGTTTCCAAACATGCACTATGATTCCTTAAGACTTATTGAGTG CATGATTAGAAATCCTTCTACAACTGATTTCAAAACAAAAATTAATTTTGGCTAGTAACTTATGTGAGTAGACCTTGTGT TTCAGAATTGATTATAAGAAAAGAGAAGCTGATCCAAACACGCTGTTATTGTGCTAGGTTTTTATTTTTTACTTTTAAGC TTAAACTGTCATTTTTTTTTTCATTGTCATCTTTTGATTATTTTGCTTCTACTAGTGACTTCATTTTGGGATTTTTGTTT AATTTTTTGCGGTTTTCAGATGCATATGTGGGGGCATGGATCACAGTATAGAAAAGGGCCTGAATCATTGAGGGGAAGCC AACCAACAGGAATGCTGAGACTTCCATGCTACTGTTGTGCTCCAGGGTGCAGGAACAACATTGATCACCCAAGAGCAAAG CCTCTTAAAGATTTCAGAACCCTCCAAACACATTACAAGAGGAAGCATGGGATCAAACCCTTCATGTGCAGAAAGTGTGG CAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACCCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATCTGTGGGTCTG ATTTCAAGCACAAGAGGTCTCTTAAGGATCACATCAAAGCTTTTGGAAGTGGTCATGCAGCTTATGGGATTGATGGCTTT GAAGAAGAGGATGAGCCAGCTTCTGAAGTAGAGCAAGATAATGATTCCACCCAGTAATGACAACGGTTTTTTCAGTGTTG GTGGATGAAATTCTCTAAACCAACAAACCATTGCGGAAACCAGAAGACATGGGGTTAAATTATACTATATGTGAATTATC TTAATTATTTTGTGAAATTATTAGTGGGGTTTTAGTATATGGCAATGGCTTCCTATTTCAAAACTATATATATGCACTAA GTTTAAATGGAAAGCCAAGCTTTTGATCCTTTTTTCTTCCTTCTGTTGGAATATTAGCTAGGAGACTGACCTGGATACAA AACACTTAGCTGGAAAAGCTAGATATATATCCAACTTCGTTGACTTGAATTTGTTGTTTGTTCTCATGTATCAGACCTCT TTTTCCCCCTTCTCTTATTAATTGCTTAATTAAGACAATATTGTATATGAATTAGTATTGTTCTTTTTCGAAATTAGTAA TGTTCTTAATTTATTTCTA
CDS sequence (LotjaGi1g1v0721900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATCCCTACTCCAATTTCTTCTCATCACCTGGTTTCTTCCACTTCAACCCCATCCACCACCACCACCACCATTT CCCATCTCCAAACCCATCTCCACACCACCCTCATGTCCACAACTTTTTCCACCACCACCACCAGATAACCACTGCTAATG CTTCTTCTTCTTCCTCTTCACCTCCTTCTCCTCCTCTAAGAGTGGAGCTCCCCCTCTTGGGCCTAAGTCCAGCAAAGCAA GAAGAATATAATGAAGAGCAAGAACAACAAGAAGATCACCTTTCCAAAGAGGAGGAGCTGGAAGAAGAAGATCAAGAAGA TGGAACTGTCACTGTTGCACTCCACATAGGTTTACCAAGCCCTAGTGCTGCTGAAATTGCCTCTGTGATGTCCTCAAATT CTTCAGAGATCTCTGATAATCATAAAGATCATGTTATGGATGGTGAGGATGATTCTGGGCTCATGAGTACCAACAGGCTC AACAAGGGCCAGTACTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTGCAA AACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTATAGAAAAGGGCCTGAATCATTGA GGGGAAGCCAACCAACAGGAATGCTGAGACTTCCATGCTACTGTTGTGCTCCAGGGTGCAGGAACAACATTGATCACCCA AGAGCAAAGCCTCTTAAAGATTTCAGAACCCTCCAAACACATTACAAGAGGAAGCATGGGATCAAACCCTTCATGTGCAG AAAGTGTGGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACCCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATCT GTGGGTCTGATTTCAAGCACAAGAGGTCTCTTAAGGATCACATCAAAGCTTTTGGAAGTGGTCATGCAGCTTATGGGATT GATGGCTTTGAAGAAGAGGATGAGCCAGCTTCTGAAGTAGAGCAAGATAATGATTCCACCCAGTAA
Protein sequence (LotjaGi1g1v0721900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADPYSNFFSSPGFFHFNPIHHHHHHFPSPNPSPHHPHVHNFFHHHHQITTANASSSSSSPPSPPLRVELPLLGLSPAKQ EEYNEEQEQQEDHLSKEEELEEEDQEDGTVTVALHIGLPSPSAAEIASVMSSNSSEISDNHKDHVMDGEDDSGLMSTNRL NKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGSQPTGMLRLPCYCCAPGCRNNIDHP RAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGI DGFEEEDEPASEVEQDNDSTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 340 | 340 | 1.1E-165 | – | |
| PANTHER | 1 | 340 | 340 | 1.1E-165 | – | |
| MobiDBLite | 50 | 108 | 59 | - | – | |
| Coils | 80 | 106 | 27 | - | – | |
| SMART | 180 | 202 | 23 | 0.58 | ||
| ProSiteProfiles | 180 | 207 | 28 | 9.64 | ||
| ProSitePatterns | 182 | 202 | 21 | - | ||
| Gene3D | 223 | 312 | 90 | 7.3E-7 | – | |
| SUPERFAMILY | 246 | 284 | 39 | 1.54E-6 | ||
| SMART | 264 | 284 | 21 | 49.0 | ||
| ProSiteProfiles | 264 | 284 | 21 | 8.808 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0721900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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