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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0722500 |
| Transcript ID | LotjaGi1g1v0722500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 18; TAIR: AT1G34350.1 Tmem18; Swiss-Prot: sp|Q28GF5|TMM18_XENTR Transmembrane protein 18; TrEMBL-Plants: tr|I3S5F2|I3S5F2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0722500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129375429..129380057) extracted from Lotus japonicus Gifu genome v1.2.
CGCATAAATACCGGTTCAAAAAATTAAACCCGGTCGGATCAAACGAACCGGAATAAGAAGGTTGAAGTCTGAAGAAAACT GATAAGAGTGTTGCAGAAGATTCTTCAAGACGAGTCGACTCAGTTGATTTGAATCTCGTGCATTTCGTGTCAATCACCAT GGACGAGTTGAAATCAGCATTGGATGAGCACATGGATCTCATGGCAGATCTTGTTCAGAAGTTATCTTCAGAGCTTCGTT CTGGTCTTCGTCCCGCTTACGATAACTTCATTGGGTTTTTCCATGCCATTGATTGGAAGGTACCCCTTCTGCTTTTTTTT TCCTTGACCCATTTCTTTTTTTGGGTCCTTGAATAATGGGTTGTTTTCAATTTTCCTTTTTTTTGGTTCTATTTGGGTGA TGGAGAAATCAAGTGGAAACCAACTTGAAGTGCAAAATGTGGTGTTATTTTTAACCTTTGTGTTTTCCTGTTGTTGAAAT TTGTGACTTGTGGGATGTTCAGTTGTTGTTTGTTCTGTGTGTAACGCCATTTTGTTGGATTTTGATGTTGGGGATTGGAG CAGAAAGGTCTCAGTTGAAGGGTGATATAATCATATGAAATGTAATTTTAGATTTTGTTTTTCGGTGATGTTCGAATAGT GGAATGAGCATTGGTGATGATCTTTTATGGATAAGGAAGTTCAAATTTGTTGTTTCCTTTGCATGTGGTGAATAGAAAAT GCTTGGATGAGTTATTGGTTGGTTTGCAATTTGGTGTTTGAAGACTTTCTTTCCATGAGGGTGCTGATTGTTTTAAGCAT TTGGTCCTTGACAATGTTGTGCACAGGAAACCTGTGGATCTAGTAGGGGTATCAAAGGTTATAACAATATGATGCGATTT TTCTTGTCAATATAATGGAATAGGATCACAGGAAGAGAACTTAGGTTTTTGACATGAATATTATCCTCTTCAACTTTCCA TTTATATGCTATGTTTTTTGGTGTACTATATACTTATGGATAAATATTATGTTTTTCTGAATCATATTGCTTCTGGTGTT TTCTGTTCATATATTTTTCAATCTTGATCATTTTGTCCTTTTCTGAACTTTCTTATTATTTGCATCCTTTGGAGTTACTA ATATTGCCTTGATTTTTTGTTTCAGGAACCTTTTCTAATAGGATTGTTAACATTCCATGCTGTTTTGCTGCTTGTGACTG TCATATCTAGGAAGAATACCAACTTCCAAATGTGCCTGTTCCTTTTAACATGTATGTAGCATTCCTTCTATATGTTATGA AGTGTTTTTTTTTTTTTAAATAACTATATTGCTTGAATAGTCTTCTCTAATACTTTTGACATACTTCATTCATGTTTGAA GTTGTTGCTATCCTCCTTTATAATAAACTTAGTAGCCTTGCTTTTGTTTTTCTTCCTAGAATGAAATGCTGCATTGAGAT AATGTGAAATTGAGAGAAATTCTGCTCTCTATTCTGTTTGGCTAAAAGCTTCACTCGTGCCAGCCCTTTATCTTGTCAAG AATTTATGATTGAAAAGATTCCTAAAATTGTCATAAAAGAGTGAAAATCCAGTCATGTTAGCTCATGGAAACTATATCCT TTTGTATAATGAAAAACTTTGATGACTGCAAAATTCTAATGCTGCTTTGAGATAATGTGAAATTGAGAGAAATTCTGCAT TCTACTCTGTTTGGCTTTAAGCTTCACACATGCTAGTCCTTTTATCTGGTCATGCATTTATGATTGAAAAGATACCTAAA ATTGTCATAAGAGGGTGAAAGTCCAGTCATATTGGCTCATTCATTGGAACTAAATATTCTTTTGCATAGTGATATATTTT GATTACTGCAAAATTCTTCATATCATTTATGTTAAGGCTTCTTTGGAATGAGAATGTTCATGTCATGATCTTAACCAGTG ATCAGGCAACTGAGATAGAAATGCCCTTTTAATCCACAAATTGAAAATTCAAGCTCAGAACATTCAGGATGCTGGAACGT AGGTAGTAATGTGCTCAGTTTATTGATTCCCTTTTTTGCCTCTCTCTGTCCCCCTTGGCCCTCTCCTTACTCAAGCCCCC TGTTCAGGTAAACAACTTAATTAAGCACCTATGGCAACCATAGTAGTCAATCGCGGCAAATAGCGGCGCTATCGCGCCGT CGCGGCGCGTCGCGGCCCTTCCCCGCGATTCTGAATCGATCGCGTTGCGGAACGCCGTCGCGGCTGTCGCGCCGCGAATC GCGGCCAAATTGCGTCCAATCGCAGCAAATCGCGGTGCTCCAGGTTGAAGATGGGTCGGGTCCAATGAAAATCCCCAAAT TGCCCTCAAAATTTTAAAATTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCGCTCTTAATAAGTGAAACGGTGCGTTT CACTCATCTTCTTCAACGCGTTTCTTCTTCTTCTTCTTCAGCGCGTTTCTTCTTCTTCATACGCGTTTCCTCTGCAATCT CCGGTGTCGTTCCTTCAGCTCAGCCCCTTCGACCAGAAGTCCAGAACCGGCCACGACGCAATCTGACAAGCACCGTCCAG GCTCCGGCGACCACCACCCCTGTTTCTCTTGGGCCTTTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTATTCCTCT ATTTTTCTTTGCTTTCTTTTCCTTCTTATTTATTATTCTGTTCTCAAAAATACTTCTCCAGTTCTTCTCCTCTAGTAGTC CTCTCTTCTCTATCACTTCATCATGTTATGAATTTGAATTTTGAAGTTATATTTATCACTTTTTAGTAATTATATGTATA TATTAATTATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCTGCTATCCGCTATCCCGCTATCCCACTTTTGG GGTCGGCCGCTACGCGCCGCGATCTGGGATTGACTACTATGATGGCAACTAGCGCTTATTCATGAGCTAATTTGAGAAAT TATTGAAATAAGCTTAAAATAAGTCACATGTAAATATAAGCTCTTATTCATTAGGTAATCGGAGCGACTTATGAAAATAA ACTCAAAACAACTTATAGGTAAGCTCTCCAAACACTTGCATAAATGCTTATGCCTTAAGATAAGCTCTTCCAAACGGGGC CTTAGTTTAGTACTAGTCTATAACCTTTGTTGATTGTTGTTTGCTGTTTGATTTGGGAATCACTGAAGGCCAATGTATTG GTCCTTATTTTTACAAAACCTTCATCTTGAGGATAAGGTTTTGGGGCGCCGGTGGGTGGGCGGTTATTGTTAGGAAGTGA GAAATGACAGGGTATAATAATATGAAGAAGAAACGTATAGAAGAGGGTCTGGGATTTTGGAGTGGGAATCCAAATCTCTG AATACCTTGGTGTACAGAAGAGATACATTTCCATTATACATTCTTGGTATCAGAACTTGTATCGCACTGATATTGGTCAG GGGGACTTTTTCTACAACAAAGGTTGTTCTCCCTATGTCTGATCCATCTCTATTAAATAATCGCATGGGTGCATGCTATA AAATTCTACAGCAAGTAGCTGTCCTTAATTAGGTATGGAATTACAATTATAGATAGATATTTGAGCTTAAAATGTAAAAT ATTGAGATAAAATTAGGGGTGGACATTCTCTTGAATTAGAATTTAATTGCACAAGCTATAAATCCAAGGTAAAAACTTTA CTTCCAGTTATATGGCAATTGTTGACAATTCATGAAGACTATGTAGAGTTGTTGAACTTTGATGAAATCTGGTACATTTT TCTGTGCATTTTGTTTCTCAGTTCAGCATTATCACTAATATCCACTTTTTCTGAAGTTTTGTCACTCCTGATTTTCTATT TCGTACGAATATCATTCAATTTGCAGATGCTATTAATGTAGCTTGTCTTACCTCGTAATACTTTTGGTGCAGTGATTGGT GTGTATCTTGCCGAGAGGCTTAATAGTGTCATGGGAAAAAACTGGAAAAGCTTCGCTGCTCAAAACTATTTTGATCCAAG TGGATTATTCATGTCAGTTCTTTGGTCTGGACCACTTCTTGTCATTGCTATGATAATCTTGGTCAGTATTTTCTGTCACA ACCATTTTTGTGCTGGTATTTTCATATTGAATATTGACTTATAGTATCTTGCCTCTTTTTGCAGGTAAACACACTCTTCT CCTTATGTTACTTGATTGTTAAATGGAAACGAGCCGAACTAAGACATCGTGCAAGAGCTGCTAGTAGTAAGCAGGACTAG TTGGTTTGTAGTAGGATTTTGATGTATTAAACTCTTTCTTTTCAGTGAGGTTATGCAATCACAAGGTTTTATGCGAATGA ATGTCATATTTTGTTTTTAAATAGTCTTATGGACTACTCTTTACTATCCAGTTATGTTTACAGTCTATGATTGCTATTAA CAAAGGAATCTTTGTAACAAAAACAAATTGTGTACATATTTAATGTTTTTTTTTCAGTAACTTCCAAAATCAAGATTGAC TTGCACAAATATATCGTGTTTTGTTAGGGTTGAAGATGTATAAACATTTTGTTGGAGAAAAAAATGTGTCTCCCTTTGCA ATCAATCTCTCCCTCCTACGAATATCCTTGGCCGTGGAATTTCCTTGGCTTATGCCTTCTGATTTGCAC
CDS sequence (LotjaGi1g1v0722500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAGTTGAAATCAGCATTGGATGAGCACATGGATCTCATGGCAGATCTTGTTCAGAAGTTATCTTCAGAGCTTCG TTCTGGTCTTCGTCCCGCTTACGATAACTTCATTGGGTTTTTCCATGCCATTGATTGGAAGGAACCTTTTCTAATAGGAT TGTTAACATTCCATGCTGTTTTGCTGCTTGTGACTGTCATATCTAGGAAGAATACCAACTTCCAAATGTGCCTGTTCCTT TTAACATTGATTGGTGTGTATCTTGCCGAGAGGCTTAATAGTGTCATGGGAAAAAACTGGAAAAGCTTCGCTGCTCAAAA CTATTTTGATCCAAGTGGATTATTCATGTCAGTTCTTTGGTCTGGACCACTTCTTGTCATTGCTATGATAATCTTGGTAA ACACACTCTTCTCCTTATGTTACTTGATTGTTAAATGGAAACGAGCCGAACTAAGACATCGTGCAAGAGCTGCTAGTAGT AAGCAGGACTAG
Protein sequence (LotjaGi1g1v0722500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDELKSALDEHMDLMADLVQKLSSELRSGLRPAYDNFIGFFHAIDWKEPFLIGLLTFHAVLLLVTVISRKNTNFQMCLFL LTLIGVYLAERLNSVMGKNWKSFAAQNYFDPSGLFMSVLWSGPLLVIAMIILVNTLFSLCYLIVKWKRAELRHRARAASS KQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 163 | 163 | 1.2E-79 | – | |
| Phobius | 1 | 49 | 49 | - | – | |
| Coils | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 163 | 163 | 1.2E-79 | – | |
| Pfam | 40 | 156 | 117 | 1.1E-45 | ||
| TMHMM | 50 | 67 | 18 | - | – | |
| Phobius | 50 | 67 | 18 | - | – | |
| Phobius | 68 | 73 | 6 | - | – | |
| TMHMM | 72 | 89 | 18 | - | – | |
| Phobius | 74 | 90 | 17 | - | – | |
| Phobius | 91 | 117 | 27 | - | – | |
| Phobius | 118 | 144 | 27 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 145 | 163 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0722500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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