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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0723500 |
| Transcript ID | LotjaGi1g1v0723500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polychome, UV-B-insensitive 4; TAIR: AT2G42260.1 uv-b-insensitive 4; Swiss-Prot: sp|O48533|PYM_ARATH Protein POLYCHOME; TrEMBL-Plants: tr|I1JNH4|I1JNH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129480909..129482522) extracted from Lotus japonicus Gifu genome v1.2.
AATAAACCAAAAACAATTTGAAATGAAAATTTCACGCATTTGAATTTGGTTTCTGCAAACCAAGGTTTCATTATATAGCG CCCATTTTTCATTTTCAAAACTCGCCATTTGGTCACAACACTCTTCATCTTCCAAAATTCACAGAAACCCTGCACCCTTT TCTCTCTCGCAATTGTGCTGAAAATCACAAACCCTAAAAACCAAAAATCCCCAATTCCAAAACCACCTTCATCTTCATCA TCTTCTTCATCTCTCACTCAGATCCCACTCCATTCCCTATTTCAGCACAATGCCTGAAGCCAGAGACAGGCGCGTGACGC CACTCGACGTCGCCGCCATGTACGCCCAACGCAGAACTTCACCATTCTTCGTCCTCGATGATTCCCACCCGTTTACCTTC GGCGCATCACCGTTCGGCACCAGAGCTCCACGAAACGCCACCGGACGCGGCCGCGCTCTCTCCCTCCGCGCTCCCGGACC GGAGAATACTCCTCCGCTTGTCGCTCGTCGAGGAAGGGCTCGAGCTTCTTCGCGGAGTGTTCTTCCCGCTTGGTACCCTC GAACTCCGCTTCGTAACATCACCGACCTTGTTCGCGTAAGAATCGCTCTCTTTCTTCTTCTTCAATTTCTCGCTCTTTGA TTTCGATGTTGTTGCATTTACTGTGATCTCTTTGGTAGTTAGGTTTCTTGCTTCCATTTCTGTGATTTTTGCGATTTCTT GCTCTGTTTATGAATCGTGGAAATTTTCTACTGTGTTTCAGGCTATAGAGAGAAGGAGAGTTCCTCTGGGAGAGAGTAAC GAAGGTGAGAGAACACCACTCCCTGAGCGTCAATCTTCGGATTCTTCTGATGCTGGTGCTCGTCTTGAGAACCATGCTGG TGAATCTTCTTCTGGGGTTTCTCCCAGTCCGGTGAGCGTGAAGATCCGGTGCAGCAAGGTGCCGAAGATTGTTCTTGAAA TTGCTGAGGACGGGGATGATTCGGAGTTTCTTACTCCTCAGAAGAAGCTTCTGGAGTCAATTGATACGGTTGAGAAGGTT GTGAGGGAAGAGCTTCAGAGGTTGAAGAGGACTCCGATGGGTAGAAGGGCAGAGAGGGAGAAAAGGGTGAAAACGCTAAT GTCAATGAGGTGAAATGTGATATCACTGAGCAGGGTTGGGCTAATGTTGAAGAAGGAAGATTGGAGATAATGGCACACCC CATACTCGACAGTGCATAGATTCATGAATGGGGGTGTGCCGATATCGGCTTGTGCTTTTCAGCTTGTGCTCTTCGCGCGT CGACATCTACGAGCAAGCAGCAAGACCAAGTGGCCAACTATATAGATATCGGTGGGATTTCTTACTTAGAAATCTCACAT TTTAGATTTTAGTGCAATTGTAGTTGATTTCTTCTTTTAACTAGTTATGAATTCTTGTTACCCCACAATTTTCTCATATA TTGATCATACTTCTCGCTGTTTAGGTAATTCCTCTTTTGTCATTCTTCTGTTGATTTGCCTTATATGTTGTTCATGCTGT TATCAATATCATTTAATGTCAATAGCAGTATGATTCATTGAGTTTGCTTAGTAAGATAATGGGTATCTTGAGTTTGATAC AAGTGACACTTGCA
CDS sequence (LotjaGi1g1v0723500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGAAGCCAGAGACAGGCGCGTGACGCCACTCGACGTCGCCGCCATGTACGCCCAACGCAGAACTTCACCATTCTT CGTCCTCGATGATTCCCACCCGTTTACCTTCGGCGCATCACCGTTCGGCACCAGAGCTCCACGAAACGCCACCGGACGCG GCCGCGCTCTCTCCCTCCGCGCTCCCGGACCGGAGAATACTCCTCCGCTTGTCGCTCGTCGAGGAAGGGCTCGAGCTTCT TCGCGGAGTGTTCTTCCCGCTTGGTACCCTCGAACTCCGCTTCGTAACATCACCGACCTTGTTCGCGCTATAGAGAGAAG GAGAGTTCCTCTGGGAGAGAGTAACGAAGGTGAGAGAACACCACTCCCTGAGCGTCAATCTTCGGATTCTTCTGATGCTG GTGCTCGTCTTGAGAACCATGCTGGTGAATCTTCTTCTGGGGTTTCTCCCAGTCCGGTGAGCGTGAAGATCCGGTGCAGC AAGGTGCCGAAGATTGTTCTTGAAATTGCTGAGGACGGGGATGATTCGGAGTTTCTTACTCCTCAGAAGAAGCTTCTGGA GTCAATTGATACGGTTGAGAAGGTTGTGAGGGAAGAGCTTCAGAGGTTGAAGAGGACTCCGATGGGTAGAAGGGCAGAGA GGGAGAAAAGGGTGAAAACGCTAATGTCAATGAGGTGA
Protein sequence (LotjaGi1g1v0723500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPEARDRRVTPLDVAAMYAQRRTSPFFVLDDSHPFTFGASPFGTRAPRNATGRGRALSLRAPGPENTPPLVARRGRARAS SRSVLPAWYPRTPLRNITDLVRAIERRRVPLGESNEGERTPLPERQSSDSSDAGARLENHAGESSSGVSPSPVSVKIRCS KVPKIVLEIAEDGDDSEFLTPQKKLLESIDTVEKVVREELQRLKRTPMGRRAEREKRVKTLMSMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 225 | 225 | 2.7E-50 | – | |
| PANTHER | 1 | 225 | 225 | 2.7E-50 | ||
| MobiDBLite | 38 | 78 | 41 | - | – | |
| MobiDBLite | 111 | 125 | 15 | - | – | |
| MobiDBLite | 111 | 154 | 44 | - | – | |
| MobiDBLite | 206 | 225 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of nuclear division | Any process that modulates the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. | ||
| Biological process | Negative regulation of ubiquitin protein ligase activity | Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi1g1v0723500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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