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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0725400 |
| Transcript ID | LotjaGi1g1v0725400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LKA4|UBA2C_ARATH UBP1-associated protein 2C; TrEMBL-Plants: tr|A0A0S3RXU6|A0A0S3RXU6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0725400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129628892..129632886) extracted from Lotus japonicus Gifu genome v1.2.
GGTGCATTGAGTTCGGTGGTGAAGAAGAGACACAGATGGAAGATTTGAAGAAGAGGAAGCTCGAGGAGGCTACCAATGGC GGTTTCACTTCCGTGGAAGACCTTCGCCTCCTCATCGAACCTCTCGCCAAACCTCAGCTCGTCGATCTTCTCGCTAAACT GTGCGTCTCCATTCCATTCCATTTCTTTGCATTCATTTTCACCATCTTTTTCCCAGCTTTCACTTTCACTCACAACCACT GTTCCAATCATTTCCGAAAATTGATTCACAGGGTACTAGAGTAGAAATAAAGCAACAAAATGCTATCTTTATGTGTATAG CTCTTATGGGTATATTTGTTGAGAAGTGAACAAGGTTTTTTGTACTTAGTTTCCTTTGAAAGTGTGCAATGGTGTTTAAA CTTGCATGATTTGGCCTTAAAATTGTTAAAAAAAAAAAAAGACTCATTAGGAATTATAATCATTATTTTCTAGTTTACAA TTACTACTTGGTACTTTTGGAGAAGGATCACAATCTTAAGGAATTAGTATCTATAGTATACATAAATAATTAAATCAAAT CTTAGATGCTTAATGTGCTGTAGAATTTGTTACACTTTGAGTCTGGCATTTTTTACCTTAATAGGCATGAGTAATGTGCA TTTTCCATATTTGAATGTTATTATCTTCTGCTTGCTTGCTTGGTGTGCCTGTATTCTCTGAAAATGGGCCGTGAAATGAA AGTATTACTCCCACTTGTATGCTGTGTGATTGACCGTGTGCATGTGTGTTTGTTTACATGTTGAGGCATAAAGAGGGTCC CAATATCCTTCCATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCCT GGCCTGGAATACCTCATCAGAAACTTTGTGTGCTGTGAGTGTATTGATGATTGTGTTTTGTGTGTGTCATGCATGTCATT GTTTGTTACATGCCACTTGGAACGCGCCAACATGGTTTATTTATGGAATTTCAATTTCAATGTCCCTCTATTTTCAGCAC AATACACTACTGTTTTTGACCTCAAGAATCTAGACTCCAAAAAAATTATAAGCTTTCCTTCTTCGTAGATTGCTTCTCAA TACTGTATTTCTTTTCCAGGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAGCGACTGGAA AATCCCGTGGCTATGGATTTATCACTTATAAAAATATGGAATCAACTCAGGCTGCATTGAGAGCACCCAGCAAGTTAATT GATGTAAGCTTTAGCTCATTTTGTTGCTTTGGATTGAGACCTCTCATATGAGTTGATACATGAATTTTCAATTTCTCTTT GCAAACATCGTCTTACTGGCCTGCCCCGCTTCTTCTTACTAAAGATTAGATGTACCGTGGCATTTTATCAGGAAGCTTTT CTCGGATGTTGTTTACTTTGGGGGTTTTGATCTGTCTTCTTTACTCCACTTGTGATTTGTGATCTATAATATATGCCTGC CTTTGTTTTTTTTCTTTACAGAATTAATTTCACCTTGAATTACCTACTTGTTACTTTTTTGCCATCAATATAAACTGGAT TGTCTATGCGAGAAAATATATTGGCAGAGTGACATTCTTTAACCTAAGGTAGATAAGATAACCTATAAAGTATAAAACAC TGGGTTATTTGTAACTTGCATTTTCTTAAAGACTTCTAGGTTGTAGTTCATTGTGTGTGTAAGTTCCTTTTATTTTTATT CTAATTTGTGCGACTGTCTATACTGATCATTGCTTCTTTCCCTTGGTTGATTTTCGGGATTTTTGCATTCAGGGAAGATT GGCTGCCTGTAATCTAGCTTGTGAGGGCCTAAGCGGACCAAGCAGTGCTCTTGATGTTTCCCAGAGGAAGCTTTACATTG GAAGCTTATCACCAGAAGTCACTAGTGAAGTGCTGCTTAGCTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGTTCAGTT GCATATGACAAGGATACAAATGTATCACGGTAAAATAGAAATAAACTTTATTTGGTTATACTATTTTATTGTCTTTAATT TTTGTTAAGTAGTTTCTTTGACCTGGTTTTCCCAGTAACCCGTACTATTGCTTTGCTTTCAATTGTAGTGGTTTTGGCTT TGTTACGTACAAGACAACGGAGGCTGCAAAGAAGGCCATAGATGACCCAGAAAAGACTCTTGGGGTAAGCAAACACATAA TTTTTTATATTAAGTCTGAGGTTAGTTGTGTGCTGAATTATTTCTATGCTTAACAGTGTCTTGCAATTGCAACAAGAAAA ATGGAACAATCATTTTGAGTGTTTGAGTGAATACAGCATCCTAGTTAAAATGGTTTACATACTTTCAGGATTCGCTGCAT ATCTGGATTTTACTTTTCTGCACAGAGCTGAATTTGTTTAAATTTCTATCCTTATTTTGACCCTCTCTTGTAGTTCATTG GGAGGAAGCTCTTCCTCTGATGGTGATAACAACTAACAAGTACTGTTCTTATAAGAATTAATGCAAATGGTGAAAGGGGT CTTGAGTATAATGCTCTGGCTATGGTGAAAACTGAAAAATCTACTTTCACACATGTTTGATTAAAGTTGTCATTCCCTCA ATGACATAAATTGTACTTCATACCACTTGATATTTTTTCTTCATAAAGTAGCTACTTTATAGGGCTTATGAGTTTTGATC TTGGTAGTGAATTCTTAGTTTCTTACTATGCCCTACAATTGCCTAAGTATTCAAGCTGTATAACCATTGAAATTATTACT TATTCTTTTTCTCTGAATGCAGGGGAGGACTATAATTGTAAAATTTGCTGGTGCCCACAAGGGTAAAACTGGCCAGCCGC CATTTCCTGCAGGAGTTCCAATGGCAGCCTTACCTATGACCCCAGGATATGTGCAGTCTGGAAAACCTCATATCAGTTCT GCCCCCTCTGTCGGTTACACATACCCCCAACCTGTAGCACCATATCCTCTTGCTTCTTATCCAATACCTCCCCTTACTGC ACCACCCTCTGCTTACCCAGCACAAGGGCAGGTTCCTTATGCTCCAGTTTCTGCCAAGAAAGACCAACTCGGGGTCCCTC CAACTCAACCTGTGGGAATGAACAAGTACCCTTATTACTATCCCAAGCAATAAATGTTTTTACTAGTGATATTGGTACTT CTTCATTCTTTGCTTTCCTGTTCAATTATTATTAGCCCCCTAGTATCCGTCATACCATTTATTTTGCAGCTTTTGCAATC TCTTTTGTAGTATTTTGACGTTCTTAGTACTTTTAATACTAGGTCAGAAACTCCTGTGACTAGGAAATTTCATATATTCT TTGGCTGAATGTTAGATGGGGGGAATTTTTCAAATGTTATATGCCAACTGGTGAATGCATTTTAAGCAAGGAATCCAAAC TTCCATATCATGATAAACGCCAGTGATACAACTTTTTTTTTTTACTTTAATATTAGGTGAAATTTATATAGGTCTCACCA AATAAAGAATAGATCCCACCAATTAAGGATTGGGACTCATGATTTTTCAAGGTTCACATGAACTTAGTGATAGAGGTCTT AAATTGAGTATATTGCTACTATTGTCTCCAAATCATTTCCCATTGTTGGGGTGGTTAATTGTTGCATAAGTTTTTGGCTA TTTGCACACTATTTAAATTTCCAACACTGTTAGTCTTCCTTTATCGAGTGAAATGTGTTCACAGTTCACTTTGTTGCAGG GACATCCTCATATGAATAGTGTTCTGTCGGAACTTCAAAGAAAACAAAGAATTGAAGAGACAAAATTTTATGGTGGAAGG GTCAAGGGGGACACTCGGTCCATCAAATTATTTATTTTTTGCAACTTGGAATAACAGCAAAAATCATCTTCTATCTTTCT GAAAATTACAAGTAAAAAATCAAAGGTTATCAACATTTCTTTATATTTTTTTAATGTAAGAATTCTTCGCAAAGA
CDS sequence (LotjaGi1g1v0725400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATTTGAAGAAGAGGAAGCTCGAGGAGGCTACCAATGGCGGTTTCACTTCCGTGGAAGACCTTCGCCTCCTCAT CGAACCTCTCGCCAAACCTCAGCTCGTCGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCCATTGCAGAAGAAATAA AAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCCTGGCCTGGAATACCTCATCAGAAACTTTG TGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAGCGACTGGAAAATCCCGTGGCTA TGGATTTATCACTTATAAAAATATGGAATCAACTCAGGCTGCATTGAGAGCACCCAGCAAGTTAATTGATGGAAGATTGG CTGCCTGTAATCTAGCTTGTGAGGGCCTAAGCGGACCAAGCAGTGCTCTTGATGTTTCCCAGAGGAAGCTTTACATTGGA AGCTTATCACCAGAAGTCACTAGTGAAGTGCTGCTTAGCTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGC ATATGACAAGGATACAAATGTATCACGTGGTTTTGGCTTTGTTACGTACAAGACAACGGAGGCTGCAAAGAAGGCCATAG ATGACCCAGAAAAGACTCTTGGGGGGAGGACTATAATTGTAAAATTTGCTGGTGCCCACAAGGGTAAAACTGGCCAGCCG CCATTTCCTGCAGGAGTTCCAATGGCAGCCTTACCTATGACCCCAGGATATGTGCAGTCTGGAAAACCTCATATCAGTTC TGCCCCCTCTGTCGGTTACACATACCCCCAACCTGTAGCACCATATCCTCTTGCTTCTTATCCAATACCTCCCCTTACTG CACCACCCTCTGCTTACCCAGCACAAGGGCAGGTTCCTTATGCTCCAGTTTCTGCCAAGAAAGACCAACTCGGGGTCCCT CCAACTCAACCTGTGGGAATGAACAAGTACCCTTATTACTATCCCAAGCAATAA
Protein sequence (LotjaGi1g1v0725400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDLKKRKLEEATNGGFTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIG SLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFAGAHKGKTGQP PFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASYPIPPLTAPPSAYPAQGQVPYAPVSAKKDQLGVP PTQPVGMNKYPYYYPKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 312 | 299 | 8.2E-124 | – | |
| PANTHER | 14 | 312 | 299 | 8.2E-124 | – | |
| SUPERFAMILY | 53 | 140 | 88 | 2.28E-20 | ||
| Gene3D | 54 | 141 | 88 | 1.5E-19 | ||
| ProSiteProfiles | 64 | 155 | 92 | 14.317 | ||
| CDD | 64 | 139 | 76 | 5.7926E-32 | – | |
| SMART | 65 | 137 | 73 | 1.4E-18 | ||
| Pfam | 66 | 132 | 67 | 4.3E-14 | ||
| Gene3D | 142 | 238 | 97 | 3.6E-22 | ||
| SUPERFAMILY | 150 | 237 | 88 | 7.39E-24 | ||
| ProSiteProfiles | 155 | 232 | 78 | 16.313 | ||
| SMART | 156 | 228 | 73 | 6.5E-22 | ||
| Pfam | 157 | 225 | 69 | 3.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0725400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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