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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0727600 |
| Transcript ID | LotjaGi1g1v0727600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT3G63120.1 cyclin p1;1; Swiss-Prot: sp|Q75HV0|CCP31_ORYSJ Cyclin-P3-1; TrEMBL-Plants: tr|I3SVB5|I3SVB5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0727600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129927738..129928905) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGTCTATTATTTTGCAGTTTGGATATGGGGACTCTGGCTCTTGAAACCGAGGATGTAAGTTCAGACATATACCTTTC ATTGGGGCTCAAAGGATTGGATAAAGGAGTAGGAGTACCACGAGTTTTGTCTCTTCTCTCTTCACTTCTTGAGAGATCAG TTCAGAGAAATGAAATGCTATTGGAGTCGAACCATATAAAAGATGTTGTTACAGTATTTCATGGTTTAAGAGCACCTGCT CTGAGTGTTCATAAATACATTGATCGTATCTTCAAGTACTCAGGTTGCAGCCCATCCTGTTTTGTGTTGGCACACATATA TGTGGATAGATTTCTTCAGCATACAGAGATCAAATTGACTTCTCTTAATGTACACCGGCTTCTGATCACAAGCATTATGC TAGCAGCGAAATTCATGGATGACGCGTAAGTGCAAGTTTGAAAGTTCCCAAATGTACATATTTCCATGTTATTGTCTGTT TTATGTGTATTGTGGTGCATATTTTAGTTCTATGCCTAAAAGTAAAACTTATCTAATTTGTGTACCATATACGTGTCATG AACCAATTATCCCAAAAACCTTAAGCTATTAGGCGAAGAAACATCAATGTTTTTATATTATATAATCTAACACGGTAACA ATGCACAAATCCACCAATCTTATTCCAAAGTTCAACATTTTTATTAGAATATTGAGAGCAACAAGGGTCGAAATTTAAAT CACTTGGTCATAAAGGCTTTGACCATGTCATAAACCAACTATCTCAAAAGTTTAAAGTAAACTACTGGTGAAAACACATT AATTTGTTGATCAATAATGCAGAAATGATTATGCAATGGGCCTCTTGCTTTAACCATTTTGATTAGCTTTCCATTTTATT CAGTTTTAGCTGTTAACATAGCTATCTTTTTGGTTTTGCAGGTTCTTCAACAATGCTTACTATGCTAAAGTTGGAGGAGT AAGCACGTCTGAATTAAACAGGTTGGAGATGAGCTTTCTGTTCGGCATAGATTTTAGACTTCAGGTTAGTGTAGACAAGT TTCAAAGATATTGTTGGCAATTGGAGAAAGAATCTGCAGATATACTCCAAATTGAAAGGCCAATGCAGGCTTGTAGGATT AAAGAAAGCTGGGATGATTCTACGTGTGCTTCCACAATTGCAGGATGA
CDS sequence (LotjaGi1g1v0727600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGACTCTGGCTCTTGAAACCGAGGATGTAAGTTCAGACATATACCTTTCATTGGGGCTCAAAGGATTGGATAAAGG AGTAGGAGTACCACGAGTTTTGTCTCTTCTCTCTTCACTTCTTGAGAGATCAGTTCAGAGAAATGAAATGCTATTGGAGT CGAACCATATAAAAGATGTTGTTACAGTATTTCATGGTTTAAGAGCACCTGCTCTGAGTGTTCATAAATACATTGATCGT ATCTTCAAGTACTCAGGTTGCAGCCCATCCTGTTTTGTGTTGGCACACATATATGTGGATAGATTTCTTCAGCATACAGA GATCAAATTGACTTCTCTTAATGTACACCGGCTTCTGATCACAAGCATTATGCTAGCAGCGAAATTCATGGATGACGCGT TCTTCAACAATGCTTACTATGCTAAAGTTGGAGGAGTAAGCACGTCTGAATTAAACAGGTTGGAGATGAGCTTTCTGTTC GGCATAGATTTTAGACTTCAGGTTAGTGTAGACAAGTTTCAAAGATATTGTTGGCAATTGGAGAAAGAATCTGCAGATAT ACTCCAAATTGAAAGGCCAATGCAGGCTTGTAGGATTAAAGAAAGCTGGGATGATTCTACGTGTGCTTCCACAATTGCAG GATGA
Protein sequence (LotjaGi1g1v0727600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTLALETEDVSSDIYLSLGLKGLDKGVGVPRVLSLLSSLLERSVQRNEMLLESNHIKDVVTVFHGLRAPALSVHKYIDR IFKYSGCSPSCFVLAHIYVDRFLQHTEIKLTSLNVHRLLITSIMLAAKFMDDAFFNNAYYAKVGGVSTSELNRLEMSFLF GIDFRLQVSVDKFQRYCWQLEKESADILQIERPMQACRIKESWDDSTCASTIAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 209 | 209 | 3.4E-106 | – | |
| PANTHER | 1 | 209 | 209 | 3.4E-106 | – | |
| Gene3D | 28 | 211 | 184 | 1.8E-53 | – | |
| Pfam | 60 | 166 | 107 | 1.8E-33 | ||
| CDD | 75 | 159 | 85 | 2.09134E-5 | ||
| SUPERFAMILY | 76 | 166 | 91 | 6.12E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of cyclin-dependent protein serine/threonine kinase activity | Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. | ||
| Molecular function | Protein kinase binding | Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. |
Expression pattern of LotjaGi1g1v0727600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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