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LotjaGi1g1v0729900.3

Overview

Field Value
Gene ID LotjaGi1g1v0729900
Transcript ID LotjaGi1g1v0729900.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ERD (Early-responsive to dehydration stress) family protein; TAIR: AT4G02900.3 ERD (early-responsive to dehydration stress) family protein; Swiss-Prot: sp|Q9SY14|CSCL2_ARATH CSC1-like protein At4g02900; TrEMBL-Plants: tr|A0A1J7GXC1|A0A1J7GXC1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:130161376..130168543) extracted from Lotus japonicus Gifu genome v1.2.

AAGAAAGAGTGGTAACAATCAAACATGCCTCCGAACCTTTTGGCGCCAATTCTCTCTCCACCGTTCCCTCAAACAACGGT ACTCGTTCATTCATTCTCCCCAAACCAAAAAATTCAGTTACCATTGCCGCCTTCACAAACCGCCACAACACCATTAACAC AAAACAAACTTCACCTTCTTCCCCTCTCTCTCTCCCCTCTCACAACCACCGGAAACCACCGCATCGGCCAACCAAACATG CCTGCACCTCTGCAATTCATCGCCACATCATCACCCACACTCGCACCGTGAAATTCTCGATTATCGTTGCTCTTGCGTAC GATTGATTGTGTGAACGCTGCTGATACATTCATAGATTGATCAAATTCAAATTACTAGGGTTTCGTTATCGAAATCGAAT TCAATTTCAGTTGTTTTTGATATTGTGCAGGTTAAGCGTGCTTCAAAAGGAGGAAGAAAATGGCGACTGTTGCGGACATT GCTACTTCCGCAGCCATCAATCTGTTGTCTGCAGTTGCATTCCTGGTGGCTTTTGCGGTGTTGCGGCTTCAGCCTTTCAA CGATCGCGTCTACTTCCCGAAATGGTACCTCAAAGGGATAAGAGGCAGCCCCACATCTTCCAGCTCGCTTGTGAAGAAAT TTGTTAACCTTGACTTCAGGACCTACATTAGGTTTCTGAATTGGATGCCTGCCGCGCTGCATATGCCTGAGCCTGAGGTT ATTGATCACGCAGGGCTTGACTCGGCTATCTATATTCGGATCTACATTCTCGGGTGAGTTTGTATGCCGAGTTTCTCATT TAAATTCGACGCGTAAGGACATAGTTTAAAAGATACAACATATGTGATCCGCGGATCACATTGTAGGTGAAGGGCAAGGG TTCGAACCCTAAGGAGGGATAATTTGTACTAATTTACTAACAGCTAACATTTGCCTATAAAAAAAAGTGATCCACGGACT ACTATTTTCGATTTGAATACTTGATTTGGTTTTCCTTTTTAATGCTTAATTATTTTCTCTGATGGGAGTGATCATATGCA GCATCAAAATATTTGCCCCGATTACGGTTCTTGCTTTTATTGTTTTGGTTCCTATTAACTGGACCGGGAAAACTTTGGAA GCACCGGGAGCCAAGGAGTTGACGTTTAGCAGTATTGACAAGATTTCAATATCAAACATTCCATTTGGATCACAAAGGTG AGATAGATTCCCTTGACAGAGCTGTCTTGTCCCTAAGCTTCTCTCTTTTCTCTAACACGCGATGGATTCTTAACAAATTG AGAGAATTATTGATTGTGTTAGGAGCATAGTAGATTGCAAATTTGAATTTTGTCCTATAAACAAGCCAAATAAGAGTTCC AATATTAACTGAATTGGCATATCCTTTTGTTATTATAGGGTTGCAGACTCTTAGTTTTGTATCATGAATCTCATGTTATG TAATCTGGCTGCTTAGTATTTTATATTACGAAAATTCATGTTATTTTCTTCCAGATTTTGGGCACATATTGTCATGTCAT ATGTCTTCTCAACTTGGACATGCTATAGTCTTTACAAGGAGTACAGGATTATAGCAACAATGAGATTGCGATTTTTGGCG TCTGAACGTCGTCGACCAGACCAATTTACTGTAAGTTGGTCTCATTTTCTCTTAACTGTACCTTTTGCTCTTCATACGTA AAAACATATAGTATTGATTAATGCTACGATTAGCTTCAAACTGCTGACTAAGTAATGTCCGGGCTGCGGAGGGGAATTAG GCAATTATTCGGGTAGTGTGGGTTGGCTTCCGCCTGGGCAGAGAAGTTTTTTTCTGATTTATCTTACTGTTTTCCTTTAC ACATTCTGTAATTCCCTGTTCTATTCAGAGCTAGTCTCTGAGTTTTCTGTAGTAATACAAATACCACATTTAGTTCCTAT CAGATACAAACTCCTTCAGCTTGTGCTTGATTAATGAGACATTGGCAATTAGCAAGTTAGTATCAGACAATTGGTATTTT AGCAATTATATCAAACTTGTGCGAGAAAGTGAAACTAATCTTTTCAGATTCTAGTCTTCTAAGTTTTATATGCCTTTTCT TGGGTCACTTTCGAAGTGAGTTGTGGTGGCTTTCATTTCTCTTTTGTATATTTGCATGCTTCCCTTCCAGTCATTTAAAA ACTGAACTAATAGCTGCAGCAATTCTAGCTAGCTGTTCTGAAGCAAGCTGAACGTTGTTTCTTAGTAACAACTTTGGCAC TTTTTTTTTTCACAGGTGCTAGTCAGGAATGTTCCCCCAGATCCCGATGAATCAGTCAGTGAGCACATTGAACATTTCTT TTGCGTCAATCATCCTGATCACTACCTGATGCATCATGTATGTTGCTTAATTACGACTACAGTAGTCTGGCAAATATTTA GTCTGTTTTTAGTTGGAAATTATCACACCCTTCTTCACATGCTTACATAAATACTCATAATTAGAAAAAAATAGCACAAA ATTTTCAAGCACAAAATTTAATGTGGGTTACTCCAACAAGTCTACATCCTGGTATCAGAAGAGATTAAATCAATTGTGAA CAGCATTAGTGCAAAACTTTTAAACGACAAAGCTATGAACATTTTCCCACTATTTCTGTAACTTTGCATTGATGTTACAT ATCCTCACTCGCTAGTAACTACTATTACAGTTTTATGGACAAAGCTAGAAACCCTCGCCCAACATCAGGCTCAATTTCTT CTCCCTCATTCTAATAGTCCTACCAACTCCTTGACACTATTAGTTTTAACTTACCAAAAATATGCTTGATAAGCAGCCAC TCCCATGCTATTGTGGTACTATTAGTATGCTATAAAAATGTCAACAACTTCAAAATAGGAAACCAGGAATTATTACCTAG ATAAAATTTGGGTCAAACCCAACATTTTGATACATTGCTGTTTGCTCTTCATCTTGGAATTAGGAATTGTAATTTACTGA GATTTTCTTTAACAGATGGAAGGCTTTCTGTTATGATTCTTGAACATGATTACTTTTGTGATATACTCTGGTGTACCAAA GATAAATTTCTTCTGCATTATTGATAGGTTGTTTATAATGCAAATAAGCTTGCATCAATAGTTGCAAAGAAGAAGAAATT GCAAAACTGGTATATTTACTACCAGAACAAATATGAAAGAGATCCTTCAAAGAGACCAACTACTCGGGTAGCTTTATCTT CATGATTTACTATTAATAAGCTTTTCCTAAATTTCAGCAGAAGAAACCTTCTTTTAGCTTTTCCTATTTTTTTTGTGAGA ATAACCATAAGGTGATATGAACTGATATCCTTTTATGTGTCACAATTTGATTTCATATGTATATAGACAGGTATTATGGG TATTATTGGGACTAAAGTTGATGCTCTTGATCACTATACTGCAGCAATTGATCAATTGAGCCTACAAGTAAGTACTGTTT TGAACATGTTTTATTATACAGTAGTTTATACAACTCTCTGTAACTTATTGGCTTTATTTGGATAACTAAGCATGAATTGT AAGGAAAACATTTCATTGGGTTTAATTTCATTCCATTTTATTTTAGTCCAATCTAAACAATGGCAAATAACATACTCTAT TCCATTTTGCTCCATTTTATCAATCCACACATAACCTTATAATATTGTAAATTAATCAAATTATAATAGTTAGGTATCAT TGTTATTTCACTCTATATAAGGGGCTATGCTTTTGAAAGTTCAGTCATGGAGTCCAAAAGATTTTGAATTTTTCATCCAA TTCTCTGCTCTCACTTAGCAAGCTAAATATGTTGTCTCACTATTGATTACTGTTATTAGGTTTGTCTTACTAATTAGGTT GGTAAGCTCCTCATTCTAATGGCTTCAGTTCTCTCTTGCAGTGATTCATACTAAACACAGAGTTAGTTTATTGATTTATT ATAATCTAAGAAATGGTGACTACTTGAACTCTAGTTGTCTTGGATTGGATGTTAAAACAAAGGTTCATCTTACACCGGTA GGGCATGATATGTAAGGCCGTAAGTGGAAAAAAAGTGAAAGGGTAGGGTAAAGGATAGTCAGTCATATTAATTGTGAGTC AGTACAGATTAAAGGCAACAGTTACCTTTGGTTAAATTTTCCCATTTGCTTTTGTTTGTGTGTGTCCGCTTAAAAATCTG TTCATTTGGGGATAAATTTTATCGTGTTCATTTCAAGCAGGAAGCTGTAGAAAGAGAAAATGTTATGAAGGATCCCAATG CTCTTATTCCTGCAGCATTTGTTTCATTCAAAACCCGATGGGGTGCAGCTGTTTGTGCTCAAACTCAACAAACTAGTAAT CCAACCATTTGGCTGACAGAATGGGCTCCTGAGCCTCGTGATGTCTACTGGGAAAATCTTGCAATTCCATATTTTGATCT CAATATTCGAAGATTACTCATGTCTGTCTCTTTATTTTTCCTTACTTTCTTCTTCATGATACCAATAGCATTGGTCCAAT CTCTAGCCAACATTGAGTCGATTGAGAAGGTCCTTCCTTTCTTGAAGCATATAATTGAAAAGTAAGTGCTTTCAATATTA TACCAGTTAATTAGTATTCTAATTTTGAACTCTGAATAGCTTAATAATTCCCCCTTGATTCTCCAATATTTTGTTATATG AACCATTTGTCAAACGTTTTCTTTTTGCCTTTGAAATCTAATGTGAAGAAACTCATAAAATTAATTTAATCCATCAAGAG AGCTAGAATAATGTTTCTGAAGTCTGAAAGATCAGCAAAGTTTATCATAGTAAACAACCCACCATTCTAGATTAATGTTA TATTTTCTGCTTCTCCTTGCCATACAGACACAGTCTTCTTAATTCACACAGCAAAAATTATTAACATTTTTAAAATTCTC AGCACATCAAATTCTTTTATTATTTCATGTAATACTTGTTATTTTAATCAACTAGGAATCATGTCGGAAAGATTTATTAA TAGAATTGTTTAAAAACATAGAATTTTTTTAATTGAATAACCTTCTGAACTATTTTTTTAATTGATAAATAACAAAATAT TGAATGTTTATTTTTATATTTAAAGATTATATACTTCTTTTGATATCTTCTTTAATGTTACTAAGAGAATTATTAAGAAG CCGGATAACTTTCTGTACCTGTTTCCTTTTTCGATGGAATGCATAGTATTTTCCTGTGTGATTCTGTGGAGTCATGGAGT TACTCGTTGCAGGCCATCTGTCAAGTCTGTTATTCAAGGATTTCTGCCAGGGCTAGCACTGAAGATATTTCTTGCAATGC TTCCAAAAATTCTCATGGCAATGTCCAAAATAGAAGGTTTTTCATCACTTTCATCTTTGGAACGGAGGTCAGCTTCCAAA TATTACTTGTTTGTTCTCGTCAATGTGTTCCTTGGAAGCGTTATCACTGGAACCGCATTTCAGCAACTTCAGCAGTTTAT TGATCAGCCCTCTACAAAGTAGACTCCATGAGCTTGTGCAGTTTAGATAGCTTTCATTTTGGCACTGAGATTGGCCACAA ACTGATGGGGGGATTTGTATGAAAATTTTCAGGTTCACAAAAACGGTTGGCAGTACAATCCCCATGAAAGCCACATTCTT CATCACATACATAATGATCGATGGATGGGCTGGAATAGCTGCAGAGATCCTTAGGTTAGCTCCGTTAATTACGTTCCACT TGAAGAACACATTCTTGGTGAAGACTGAGCAAGACAGACAGAGTGCTATGGATCCTGGTAGCTTGGAATTTGCTACATCT GAACCTCGTATCCAGTTATATTTCATGCTAGGGCATGTCTATGCTCCAGTCACACCTTTACTCCTCCCCTTCATTGTAGT CTTCTTTGCTTTTTCCTACCTGGTCTTTCGGCACCAGGTGAGCTCTGGAAATAGACTTCGCCATCATATTTTGTTACTTA TAATTAATAATTAATGCATATCCAAACAAACGAACTAACTATTGGTTGGTTCAGATAATACATGTCTAATTTCCCTTGAG CAAAGTGAGAGAGCTTGCTTAGCCCCACTTTGATGTTCCCAACTCAAATTGCATTACACCTCTTTTTCCTGCTAAACATT AGAGTAAATAGCATTAATTCTGTTTCTTTTTTCTTTTCCCAAGATTATCAATGTGTATAACCAGCAATATGAGAGTGGAG CATCCTTTTGGCCTGATGTCCACCGTCGAGTAATCATAGGCTTGATTATATCTCAGTTTCTTCTGATGGGGTTGTTAAGT ACAAGAGGCGCCAATAAGTCGACCCTGTTGCTTATTGCACAACCTGTCTTGACAATCTGGTTCCACAGATATTGCAAAGG GCGCTTCGAATCTGCGTTTGTAAAATTCCCACTAGAGGTTGGTTAAGCAATAAGCATGCATACAAATACTTGTATTAAAT ATCGTGTATGCTAAATTGAGAGTAAATCATATACATGCAAAGAAACAAGCTGGTGTGTGCATTGGCAGAATGACTTATAT GTGATTTGATGACAGGATGCCATGGTGAAGGATACACTTGAACGAGCTGTTGAACCAAACTTGAACCTGAGACTTTATCT TCAGGATGCTTACGTGCACCCAGTTTTCAAGGGCAACGAGTTGGAAAAACCAGTAATCATTGATGACGAAGAGGAAAATC CACTTATTCCGACAAAAAGAAGTTCTCGTCGGAGTAGCAAGCCTCAATCTGATAATGGAGCCGGTAGTGCTAGCAGTTCC TCAGGTGCAGCCGTCATTTGAGATTCAAAGGATGCAATGGAGTAACTCCTCGAGTGAATGAGAATCAGCCAGTTTTAGTT GAAACCATAGGATACAGGAAACAGAATGCCCCAAACATCATTCATGCGAAACAGCCAGTTTTAGTTGAAACCATAGATGC AGGAAACAGAAAGCCCCAAATCAATTACATTATTCATACCCTTAACATTCTTTTCCTCTCAATTGCCTTAGAGAAATGTA TAACTGTATATATATCTGTAAGTATTTGTTCTCTTGTAATTAATATAGAATATACTGTGTTCAATAGAGACAAACAGTGA AAAATATATACATTTGATTCACCCCCCCCCCAACCCCCAAATGAAAATCATTGTTTTTCCAGAAAAAAATTTAACAAAAA GTTGGCTGGAGACCTTCAGACATATCTTCTTAGAATTTTTTACACCAC 

CDS sequence (LotjaGi1g1v0729900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACTGTTGCGGACATTGCTACTTCCGCAGCCATCAATCTGTTGTCTGCAGTTGCATTCCTGGTGGCTTTTGCGGT GTTGCGGCTTCAGCCTTTCAACGATCGCGTCTACTTCCCGAAATGGTACCTCAAAGGGATAAGAGGCAGCCCCACATCTT CCAGCTCGCTTGTGAAGAAATTTGTTAACCTTGACTTCAGGACCTACATTAGGTTTCTGAATTGGATGCCTGCCGCGCTG CATATGCCTGAGCCTGAGGTTATTGATCACGCAGGGCTTGACTCGGCTATCTATATTCGGATCTACATTCTCGGCATCAA AATATTTGCCCCGATTACGGTTCTTGCTTTTATTGTTTTGGTTCCTATTAACTGGACCGGGAAAACTTTGGAAGCACCGG GAGCCAAGGAGTTGACGTTTAGCAGTATTGACAAGATTTCAATATCAAACATTCCATTTGGATCACAAAGATTTTGGGCA CATATTGTCATGTCATATGTCTTCTCAACTTGGACATGCTATAGTCTTTACAAGGAGTACAGGATTATAGCAACAATGAG ATTGCGATTTTTGGCGTCTGAACGTCGTCGACCAGACCAATTTACTGTGCTAGTCAGGAATGTTCCCCCAGATCCCGATG AATCAGTCAGTGAGCACATTGAACATTTCTTTTGCGTCAATCATCCTGATCACTACCTGATGCATCATGTTGTTTATAAT GCAAATAAGCTTGCATCAATAGTTGCAAAGAAGAAGAAATTGCAAAACTGGTATATTTACTACCAGAACAAATATGAAAG AGATCCTTCAAAGAGACCAACTACTCGGACAGGTATTATGGGTATTATTGGGACTAAAGTTGATGCTCTTGATCACTATA CTGCAGCAATTGATCAATTGAGCCTACAAGAAGCTGTAGAAAGAGAAAATGTTATGAAGGATCCCAATGCTCTTATTCCT GCAGCATTTGTTTCATTCAAAACCCGATGGGGTGCAGCTGTTTGTGCTCAAACTCAACAAACTAGTAATCCAACCATTTG GCTGACAGAATGGGCTCCTGAGCCTCGTGATGTCTACTGGGAAAATCTTGCAATTCCATATTTTGATCTCAATATTCGAA GATTACTCATGTCTGTCTCTTTATTTTTCCTTACTTTCTTCTTCATGATACCAATAGCATTGGTCCAATCTCTAGCCAAC ATTGAGTCGATTGAGAAGGTCCTTCCTTTCTTGAAGCATATAATTGAAAAGCCATCTGTCAAGTCTGTTATTCAAGGATT TCTGCCAGGGCTAGCACTGAAGATATTTCTTGCAATGCTTCCAAAAATTCTCATGGCAATGTCCAAAATAGAAGGTTTTT CATCACTTTCATCTTTGGAACGGAGGTCAGCTTCCAAATATTACTTGTTTGTTCTCGTCAATGTGTTCCTTGGAAGCGTT ATCACTGGAACCGCATTTCAGCAACTTCAGCAGTTTATTGATCAGCCCTCTACAAAGTTCACAAAAACGGTTGGCAGTAC AATCCCCATGAAAGCCACATTCTTCATCACATACATAATGATCGATGGATGGGCTGGAATAGCTGCAGAGATCCTTAGGT TAGCTCCGTTAATTACGTTCCACTTGAAGAACACATTCTTGGTGAAGACTGAGCAAGACAGACAGAGTGCTATGGATCCT GGTAGCTTGGAATTTGCTACATCTGAACCTCGTATCCAGTTATATTTCATGCTAGGGCATGTCTATGCTCCAGTCACACC TTTACTCCTCCCCTTCATTGTAGTCTTCTTTGCTTTTTCCTACCTGGTCTTTCGGCACCAGATTATCAATGTGTATAACC AGCAATATGAGAGTGGAGCATCCTTTTGGCCTGATGTCCACCGTCGAGTAATCATAGGCTTGATTATATCTCAGTTTCTT CTGATGGGGTTGTTAAGTACAAGAGGCGCCAATAAGTCGACCCTGTTGCTTATTGCACAACCTGTCTTGACAATCTGGTT CCACAGATATTGCAAAGGGCGCTTCGAATCTGCGTTTGTAAAATTCCCACTAGAGGATGCCATGGTGAAGGATACACTTG AACGAGCTGTTGAACCAAACTTGAACCTGAGACTTTATCTTCAGGATGCTTACGTGCACCCAGTTTTCAAGGGCAACGAG TTGGAAAAACCAGTAATCATTGATGACGAAGAGGAAAATCCACTTATTCCGACAAAAAGAAGTTCTCGTCGGAGTAGCAA GCCTCAATCTGATAATGGAGCCGGTAGTGCTAGCAGTTCCTCAGGTGCAGCCGTCATTTGA 

Protein sequence (LotjaGi1g1v0729900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATVADIATSAAINLLSAVAFLVAFAVLRLQPFNDRVYFPKWYLKGIRGSPTSSSSLVKKFVNLDFRTYIRFLNWMPAAL HMPEPEVIDHAGLDSAIYIRIYILGIKIFAPITVLAFIVLVPINWTGKTLEAPGAKELTFSSIDKISISNIPFGSQRFWA HIVMSYVFSTWTCYSLYKEYRIIATMRLRFLASERRRPDQFTVLVRNVPPDPDESVSEHIEHFFCVNHPDHYLMHHVVYN ANKLASIVAKKKKLQNWYIYYQNKYERDPSKRPTTRTGIMGIIGTKVDALDHYTAAIDQLSLQEAVERENVMKDPNALIP AAFVSFKTRWGAAVCAQTQQTSNPTIWLTEWAPEPRDVYWENLAIPYFDLNIRRLLMSVSLFFLTFFFMIPIALVQSLAN IESIEKVLPFLKHIIEKPSVKSVIQGFLPGLALKIFLAMLPKILMAMSKIEGFSSLSSLERRSASKYYLFVLVNVFLGSV ITGTAFQQLQQFIDQPSTKFTKTVGSTIPMKATFFITYIMIDGWAGIAAEILRLAPLITFHLKNTFLVKTEQDRQSAMDP GSLEFATSEPRIQLYFMLGHVYAPVTPLLLPFIVVFFAFSYLVFRHQIINVYNQQYESGASFWPDVHRRVIIGLIISQFL LMGLLSTRGANKSTLLLIAQPVLTIWFHRYCKGRFESAFVKFPLEDAMVKDTLERAVEPNLNLRLYLQDAYVHPVFKGNE LEKPVIIDDEEENPLIPTKRSSRRSSKPQSDNGAGSASSSSGAAVI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 11 11 -
PANTHER 3 751 749 0.0
PANTHER 3 751 749 0.0
TMHMM 5 27 23 -
Pfam 7 179 173 3.4E-48
Phobius 12 30 19 -
Phobius 31 100 70 -
TMHMM 101 123 23 -
Phobius 101 123 23 -
Phobius 124 157 34 -
TMHMM 158 177 20 -
Phobius 158 177 20 -
Phobius 178 374 197 -
Pfam 200 362 163 3.3E-42
Pfam 373 645 273 1.3E-80
Phobius 375 399 25 -
TMHMM 379 401 23 -
Phobius 400 426 27 -
TMHMM 424 446 23 -
Phobius 427 446 20 -
Phobius 447 466 20 -
Phobius 467 486 20 -
TMHMM 467 489 23 -
Phobius 487 514 28 -
Phobius 515 535 21 -
Phobius 536 580 45 -
Phobius 581 604 24 -
TMHMM 582 604 23 -
Phobius 605 625 21 -
Phobius 626 645 20 -
TMHMM 630 647 18 -
Phobius 646 766 121 -
MobiDBLite 728 766 39 -
MobiDBLite 739 766 28 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0729900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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