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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0732400 |
| Transcript ID | LotjaGi1g1v0732400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A-like protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q10Q08|RFA1B_ORYSJ Replication protein A 70 kDa DNA-binding subunit B; TrEMBL-Plants: tr|G7IGJ6|G7IGJ6_MEDTR Replication factor-A carboxy-terminal domain protein; Found in the gene: LotjaGi1g1v0732400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130392655..130394996) extracted from Lotus japonicus Gifu genome v1.2.
AAGGGTACCAAGATCCATGCCAGTATTAAAAAGACTCTGATGTACAAGTTTGAGAAGTTACTGGTTGAGGGGAAGGTTTA CAGTGTGTCCTCATTTGTGTTAGTGGATAGTAGTGGGGAGTATAAAACTACACGTCATAATTACAAGATATGTTTCATGT ATAACACTGAAGTGCGCCCAATGGACCAGTTTCCTATTGATGCGTTCCCCTACAGCTTTGTTCCTCTAGCTGACCTTTTA GCTCCTACCTATGATTCCTCTTTCCTAATTGGTATCATTTTAGACTTTTATCTGCCTATGACAATTATGTGTTCCACCCC TTTAACAATTTCGTATTCCATATGGTTATGTTTTGCAGATGTGATTGGCATTCTAACCGGCGTTGGAGTTGAGAGGGAGA TTGTTACTAATGGGAAGAAATCAAAGATGAATGTGATTGAGATTGATTCTGCAGGGTAATTTCCCTTAAGTTTTTGGATT ATTTGATTTTCATCGTTTGAACCTATAATGTAGTCATTCACATTTACTTCCAGGGTCAGGGTTGAGTGCGCCCTATTCGG AGCTTATGTTGATGAGCTTGCTAATTTTCTTGGCGGTGGTGAACTCAACAACCCTGTCGTGATCATACAGTTTGCTAAAG TCAAATCCTTTCAGGGGCACAACAGCCTTCAAAATGTTCATGGGACTACTAAAATTCTGTTTGACCCAGATCTACCAATG GCTGATGTTTTGAAAACCAGGTATGCGTCTATGTTTTGGACTTTAAATTTTAGTCATTGAAATTGTGTACTTGATTGTCT GCCCAATGTTCCTTGCAGTTTTTTGGAAGCCAATGAAAGTGCATCGCACTCTGTTAGCCAATTGTCTGATTCCAAAACCG TTTCTGGCGAGGATGATTTCCTGGTTCTGACAATTAGCAAGTCTATTGCTGATTTGAGGGAAATCAAGAAGGTTTGAGAT TGCATCTCATTGTTATCAAATGAGAAATGTTGATAACTCTTGCGTTATATGCCAGACTTTTGATGATAATATTATTTGTT TGTGTAGGATTGTGTCTGTGTTGTGTATGGTACCATTCTTCCTCTTGAAGAAGGTGTTGATTGGTGGTACACTGCCTGTA GATGTAGCCGCAAGGTGTATGCTGATGAAAGGATGTTTTTCTGTGAGGGATGTAACCGTCACGTGCTGGCCGTCTATCCT AGGTTTGGTTGACTTCATTTTAAATGTTCTCATGGTAACGTTGGGTGGTTAGATAGTAATGGTATATTTCATTTGGTTTA GGTATCGTCTTCAAGTCAGGGTGGAAGATAATTCTGGCAGTGCAAACTTTATCCTCTTTGATAAAGAAGCCACTGCACTG GTTGGGAAAACTTGCTCTGAAATGGTTGATGCTTGTGACAAGGTATGTTTCAACATTATATTTTTTTAACGAACAACCTG TGGCCAAGTTAAAATTTTTATTGGTTGTATATAACTTTCAGAATGATAATGGGATGGGGATTCCTGTTGAATTAACTAGC TTTGTTGGGAGATCTGCTCTTTTCAAGATTGAGGTTAAAAATTTCCAAGGTCAGAGGTTTGACAGGTCCAGATTTGAGAC TTCATATCGTGTAAAGCGTGTCTGCACTGATCAATCGATTATTGAGCAGTTCAAAACATTGCAGTTAGATAACAGTGTAG GTGTTTCTCTACCTTATTTTTGTTATGTTTATTTACCTAATGCTGGTCCTGATCTTAATGAATACGGGATAAAGGTTGGT GCCTCTTCAAGTCGTTTGCTGCTCACCCCTCAGTCTACTCTGAATCCAGAAGCTGTGAAGCATGAGGAATTAGCGAAGGT TTATATTTTTAGAAGTATGTTATTGTTCCTTCTTTACCACATTATATAGACAAGGTTATAATTAAGTATTAATTGATATT TTTGCAGGATTTGTTGGAAGACTTTGCTGTTGTGTCCAATGAGAAAGCCACCCAAACTGAAGAATCTTTGGAAGGTCCTG CGAATCAACCTGCTATGTCATTGGAATCTCCAGCGATTGATCTAGCTGGAAATACTCAAGACATCATCAGTCCTAAGAGG AGTCCTTCACCTGAGAACGATGGTGTGTTGGTTTTGACGGGCAGGAAGAAGAAGGTGTTTCCAAAGATGAGGAAGTAGAA GAATTGAGACCTATCATATTGACGATGCAGTTGTTTTAAATGTATTTGGTGTAATTTTAAGTTGTTAAGAAGCAACATGT GGTTGCAGTGTCTTTTTTCACCTTATTATCTATGTTATGTTTTTAAATTCCAGTCTGCTATTTCAATTGCTGTTGTTTGT TCCAAGAAATACCAGTTCCCAT
CDS sequence (LotjaGi1g1v0732400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAAGTTTGAGAAGTTACTGGTTGAGGGGAAGGTTTACAGTGTGTCCTCATTTGTGTTAGTGGATAGTAGTGGGGA GTATAAAACTACACGTCATAATTACAAGATATGTTTCATGTATAACACTGAAGTGCGCCCAATGGACCAGTTTCCTATTG ATGCGTTCCCCTACAGCTTTGTTCCTCTAGCTGACCTTTTAGCTCCTACCTATGATTCCTCTTTCCTAATTGATGTGATT GGCATTCTAACCGGCGTTGGAGTTGAGAGGGAGATTGTTACTAATGGGAAGAAATCAAAGATGAATGTGATTGAGATTGA TTCTGCAGGGGTCAGGGTTGAGTGCGCCCTATTCGGAGCTTATGTTGATGAGCTTGCTAATTTTCTTGGCGGTGGTGAAC TCAACAACCCTGTCGTGATCATACAGTTTGCTAAAGTCAAATCCTTTCAGGGGCACAACAGCCTTCAAAATGTTCATGGG ACTACTAAAATTCTGTTTGACCCAGATCTACCAATGGCTGATGTTTTGAAAACCAGTTTTTTGGAAGCCAATGAAAGTGC ATCGCACTCTGTTAGCCAATTGTCTGATTCCAAAACCGTTTCTGGCGAGGATGATTTCCTGGTTCTGACAATTAGCAAGT CTATTGCTGATTTGAGGGAAATCAAGAAGGATTGTGTCTGTGTTGTGTATGGTACCATTCTTCCTCTTGAAGAAGGTGTT GATTGGTGGTACACTGCCTGTAGATGTAGCCGCAAGGTGTATGCTGATGAAAGGATGTTTTTCTGTGAGGGATGTAACCG TCACGTGCTGGCCGTCTATCCTAGGTATCGTCTTCAAGTCAGGGTGGAAGATAATTCTGGCAGTGCAAACTTTATCCTCT TTGATAAAGAAGCCACTGCACTGGTTGGGAAAACTTGCTCTGAAATGGTTGATGCTTGTGACAAGAATGATAATGGGATG GGGATTCCTGTTGAATTAACTAGCTTTGTTGGGAGATCTGCTCTTTTCAAGATTGAGGTTAAAAATTTCCAAGGTCAGAG GTTTGACAGGTCCAGATTTGAGACTTCATATCGTGTAAAGCGTGTCTGCACTGATCAATCGATTATTGAGCAGTTCAAAA CATTGCAGTTAGATAACAGTGTTGGTGCCTCTTCAAGTCGTTTGCTGCTCACCCCTCAGTCTACTCTGAATCCAGAAGCT GTGAAGCATGAGGAATTAGCGAAGGATTTGTTGGAAGACTTTGCTGTTGTGTCCAATGAGAAAGCCACCCAAACTGAAGA ATCTTTGGAAGGTCCTGCGAATCAACCTGCTATGTCATTGGAATCTCCAGCGATTGATCTAGCTGGAAATACTCAAGACA TCATCAGTCCTAAGAGGAGTCCTTCACCTGAGAACGATGGTGTGTTGGTTTTGACGGGCAGGAAGAAGAAGGTGTTTCCA AAGATGAGGAAGTAG
Protein sequence (LotjaGi1g1v0732400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKFEKLLVEGKVYSVSSFVLVDSSGEYKTTRHNYKICFMYNTEVRPMDQFPIDAFPYSFVPLADLLAPTYDSSFLIDVI GILTGVGVEREIVTNGKKSKMNVIEIDSAGVRVECALFGAYVDELANFLGGGELNNPVVIIQFAKVKSFQGHNSLQNVHG TTKILFDPDLPMADVLKTSFLEANESASHSVSQLSDSKTVSGEDDFLVLTISKSIADLREIKKDCVCVVYGTILPLEEGV DWWYTACRCSRKVYADERMFFCEGCNRHVLAVYPRYRLQVRVEDNSGSANFILFDKEATALVGKTCSEMVDACDKNDNGM GIPVELTSFVGRSALFKIEVKNFQGQRFDRSRFETSYRVKRVCTDQSIIEQFKTLQLDNSVGASSSRLLLTPQSTLNPEA VKHEELAKDLLEDFAVVSNEKATQTEESLEGPANQPAMSLESPAIDLAGNTQDIISPKRSPSPENDGVLVLTGRKKKVFP KMRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 50 | 50 | 1.2E-7 | – | |
| CDD | 2 | 45 | 44 | 2.00671E-11 | – | |
| PANTHER | 2 | 377 | 376 | 8.1E-94 | – | |
| PANTHER | 2 | 377 | 376 | 8.1E-94 | – | |
| Pfam | 3 | 74 | 72 | 2.7E-8 | ||
| Gene3D | 53 | 191 | 139 | 8.2E-23 | – | |
| SUPERFAMILY | 58 | 180 | 123 | 1.44E-15 | ||
| CDD | 78 | 180 | 103 | 1.01873E-17 | – | |
| Gene3D | 199 | 370 | 172 | 1.3E-19 | – | |
| CDD | 215 | 362 | 148 | 5.08937E-27 | ||
| SUPERFAMILY | 219 | 349 | 131 | 1.54E-21 | ||
| Pfam | 230 | 353 | 124 | 1.2E-14 | ||
| MobiDBLite | 421 | 484 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0732400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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