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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0734100 |
| Transcript ID | LotjaGi1g1v0734100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT3G13620.1 Amino acid permease family protein; Swiss-Prot: sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620; TrEMBL-Plants: tr|I1MAW8|I1MAW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0734100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130752238..130753809) extracted from Lotus japonicus Gifu genome v1.2.
CCTATTATTCAGCCTACCATGGGAGAAGAAGACCTTCCAACCGCCACGCCCACAACCCCAACAACCGCCACCACAACCCC CAAGAAACTCACCCTCATTCCCTTAATATTCCTCATCTACTTCGAAGTCGCCGGCGGACCCTACGGCGAAGAGCCAGCGG TTCAAGCAGCAGGACCCCTTTTAGCCATTCTCGGCTTCCTCATATTCCCTTTCATCTGGAGCATCCCTGAAGCTCTCATA ACCGCCGAGTTAACCACCGCACTTCCTGGCAATGGCGGTTTCGTCTTGTGGGCTGAACGCGCGTTTGGACCCTTCTGGGG TTCCCTCATGGGCACATGGAAGTTTCTCAGTGGTGTCATCAATATTGCATCGTTCCCTCTTCTCTGCATTGATTATGTCA AGAAAATCTTCCCTGTTTTGGACTCTGGTTGGCCTCGTTACGTTGCTGTTGTAGGTTCAACTCTAGCACTTTCTTTTCTT AACTACACTGGTTTGTCTATTGTTGGTTATGTTGCTGTGGTTTTAGCCATTGTTTCTCTTTCACCTTTCATATTAATGTC TCTTATTGCAATCCCCAAGATTCGTCCTCATAGGTGGCTTAGTTTGGGGCAAAAGGGTGTTAAGAAAGATTGGAACCTGT TCTTCAACACCCTTTTTTGGAACTTGAATTTCTGGGATAATGTTAGTACTTTAGCTGGGGAAGTTGATAAACCCCAGAAG ACTTTTCCCATGGCACTGTTAGTTGCAGTGATTTTCACTTGTGTGTCTTATTTGATTCCTCTATTTGCTGTTACTGGAGC TGTTTTAGTAGACCAGAGTGAGTGGGAAACTGGGTTTCATGCTCAGGCTGCAGAAATCATTGCTGGGAAGTGGCTGAAAG TTTGGCTTGAGATTGGTGCAGCACTGTCTGCAATTGGGCTTTTTGAAGCACAATTAAGCAGCAGTGCTTACCAGGTTTTG GGCATGGCAGAGATAGGGATTTTACCTAAATTTTGCGGAGTTCGGTCTAAGTGGTTCAATACACCTTGGTTGGGCATTTT GGTATCTACTTTGATATCAATTGGTGTTTCTTTCATGGACTTCACAGACATTATATCCTCTGCAAATTTTTTGTACAGTT TGGGCATGCTTTTGGAATTTGCTGCATTTCTTTGGTTGCGATGGAAGTCACCAACGATAAAGCGGCCTTACCGGATTCCG GGGAGCTGGCCATTGCTTGTAGTGATGTGCTTAGTACCATCTGGTTTTCTGATATACATAATGGTTATAGCTACTAAGAC TGTTTATTTGGTCAGTGGTGTTATGACGGTAGGCGGTATAGGTTTCTTCTTCTTTATAAAACTCTGCAAGATAAGGAAAT GGGCAAAGTTTAGCATTAGTGGCGCTGAAGAAAATGGCGTTGAAAGTGTTGCTTTATCTTGACAACGTGAAACTGTACTC AAAAGTTGTAATGTTTCGGATCAATTTAAGATTGTAATGAAGTTCAACTGTTTTCTTCCTGATTGTTTTCATTGAATTTT TTTGTTAGTAATTTACCCTATGTTGTTGATATGCAGGATCATTATCTGCTAG
CDS sequence (LotjaGi1g1v0734100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAGAAGACCTTCCAACCGCCACGCCCACAACCCCAACAACCGCCACCACAACCCCCAAGAAACTCACCCTCAT TCCCTTAATATTCCTCATCTACTTCGAAGTCGCCGGCGGACCCTACGGCGAAGAGCCAGCGGTTCAAGCAGCAGGACCCC TTTTAGCCATTCTCGGCTTCCTCATATTCCCTTTCATCTGGAGCATCCCTGAAGCTCTCATAACCGCCGAGTTAACCACC GCACTTCCTGGCAATGGCGGTTTCGTCTTGTGGGCTGAACGCGCGTTTGGACCCTTCTGGGGTTCCCTCATGGGCACATG GAAGTTTCTCAGTGGTGTCATCAATATTGCATCGTTCCCTCTTCTCTGCATTGATTATGTCAAGAAAATCTTCCCTGTTT TGGACTCTGGTTGGCCTCGTTACGTTGCTGTTGTAGGTTCAACTCTAGCACTTTCTTTTCTTAACTACACTGGTTTGTCT ATTGTTGGTTATGTTGCTGTGGTTTTAGCCATTGTTTCTCTTTCACCTTTCATATTAATGTCTCTTATTGCAATCCCCAA GATTCGTCCTCATAGGTGGCTTAGTTTGGGGCAAAAGGGTGTTAAGAAAGATTGGAACCTGTTCTTCAACACCCTTTTTT GGAACTTGAATTTCTGGGATAATGTTAGTACTTTAGCTGGGGAAGTTGATAAACCCCAGAAGACTTTTCCCATGGCACTG TTAGTTGCAGTGATTTTCACTTGTGTGTCTTATTTGATTCCTCTATTTGCTGTTACTGGAGCTGTTTTAGTAGACCAGAG TGAGTGGGAAACTGGGTTTCATGCTCAGGCTGCAGAAATCATTGCTGGGAAGTGGCTGAAAGTTTGGCTTGAGATTGGTG CAGCACTGTCTGCAATTGGGCTTTTTGAAGCACAATTAAGCAGCAGTGCTTACCAGGTTTTGGGCATGGCAGAGATAGGG ATTTTACCTAAATTTTGCGGAGTTCGGTCTAAGTGGTTCAATACACCTTGGTTGGGCATTTTGGTATCTACTTTGATATC AATTGGTGTTTCTTTCATGGACTTCACAGACATTATATCCTCTGCAAATTTTTTGTACAGTTTGGGCATGCTTTTGGAAT TTGCTGCATTTCTTTGGTTGCGATGGAAGTCACCAACGATAAAGCGGCCTTACCGGATTCCGGGGAGCTGGCCATTGCTT GTAGTGATGTGCTTAGTACCATCTGGTTTTCTGATATACATAATGGTTATAGCTACTAAGACTGTTTATTTGGTCAGTGG TGTTATGACGGTAGGCGGTATAGGTTTCTTCTTCTTTATAAAACTCTGCAAGATAAGGAAATGGGCAAAGTTTAGCATTA GTGGCGCTGAAGAAAATGGCGTTGAAAGTGTTGCTTTATCTTGA
Protein sequence (LotjaGi1g1v0734100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEEDLPTATPTTPTTATTTPKKLTLIPLIFLIYFEVAGGPYGEEPAVQAAGPLLAILGFLIFPFIWSIPEALITAELTT ALPGNGGFVLWAERAFGPFWGSLMGTWKFLSGVINIASFPLLCIDYVKKIFPVLDSGWPRYVAVVGSTLALSFLNYTGLS IVGYVAVVLAIVSLSPFILMSLIAIPKIRPHRWLSLGQKGVKKDWNLFFNTLFWNLNFWDNVSTLAGEVDKPQKTFPMAL LVAVIFTCVSYLIPLFAVTGAVLVDQSEWETGFHAQAAEIIAGKWLKVWLEIGAALSAIGLFEAQLSSSAYQVLGMAEIG ILPKFCGVRSKWFNTPWLGILVSTLISIGVSFMDFTDIISSANFLYSLGMLLEFAAFLWLRWKSPTIKRPYRIPGSWPLL VVMCLVPSGFLIYIMVIATKTVYLVSGVMTVGGIGFFFFIKLCKIRKWAKFSISGAEENGVESVALS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PIRSF | 8 | 463 | 456 | 8.2E-60 | – | |
| PANTHER | 10 | 452 | 443 | 3.0E-247 | – | |
| PANTHER | 10 | 452 | 443 | 3.0E-247 | – | |
| Gene3D | 22 | 457 | 436 | 4.1E-44 | – | |
| TMHMM | 24 | 43 | 20 | - | – | |
| Phobius | 24 | 43 | 20 | - | – | |
| Phobius | 44 | 49 | 6 | - | – | |
| Pfam | 47 | 423 | 377 | 3.2E-33 | ||
| Phobius | 50 | 69 | 20 | - | – | |
| TMHMM | 50 | 69 | 20 | - | – | |
| Phobius | 70 | 108 | 39 | - | – | |
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 109 | 127 | 19 | - | – | |
| Phobius | 128 | 138 | 11 | - | – | |
| TMHMM | 137 | 159 | 23 | - | – | |
| Phobius | 139 | 156 | 18 | - | – | |
| Phobius | 157 | 161 | 5 | - | – | |
| Phobius | 162 | 185 | 24 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 186 | 239 | 54 | - | – | |
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 240 | 264 | 25 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 265 | 291 | 27 | - | – | |
| Phobius | 292 | 314 | 23 | - | – | |
| Phobius | 315 | 334 | 20 | - | – | |
| TMHMM | 333 | 355 | 23 | - | – | |
| Phobius | 335 | 352 | 18 | - | – | |
| Phobius | 353 | 363 | 11 | - | – | |
| Phobius | 364 | 382 | 19 | - | – | |
| TMHMM | 365 | 382 | 18 | - | – | |
| Phobius | 383 | 393 | 11 | - | – | |
| Phobius | 394 | 416 | 23 | - | – | |
| TMHMM | 395 | 417 | 23 | - | – | |
| Phobius | 417 | 421 | 5 | - | – | |
| TMHMM | 421 | 440 | 20 | - | – | |
| Phobius | 422 | 440 | 19 | - | – | |
| Phobius | 441 | 467 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0734100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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