Transcript — View — Lotus Base

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LotjaGi1g1v0734300.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0734300
Transcript ID	LotjaGi1g1v0734300.1
Lotus japonicus genome version	Gifu v1.2
Description	B3 domain-containing protein; TAIR: AT2G36080.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp\|Q8GYJ2\|Y2608_ARATH B3 domain-containing protein At2g36080; TrEMBL-Plants: tr\|K7MZA2\|K7MZA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0734300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:130782603..130784882) extracted from Lotus japonicus Gifu genome v1.2.

AACACAATGAACAATTTTATCATCTTTTATTTTTTTTATAGATAAAACTTTATTAAATTTTATGAATGTGTATAAAAAAT AGGAATATAAAATATGAATAGGATAAGATTATATATAAAATATAATATTTTAATATAAAAAAATATATAATATATTTTTC TGAAACATTATATATACACATATTTTTCTTCTCAGATAGCACACATGGGGTGGGACACAGTATTCTCTCTGCTCTCTCTC TCTTTCATTGTCATATCTTCTGATCCAACTCCATCACAATAGGAATTGAATTCCCTCTTCTCCCATAATCATCATTTTCA AACACACTACTTGCTCCTTTCTCTATCTCTTTATCTATCTATCTCCATTTCTGATATAACAAAATGTCCATAAACCAGCA GCAGCTATGGTGGACCCAGCACCAGCAGCAAAATCTCATTCACCCCCAGTTTCACAACCCACTTTCTTCTTCTCCTTCTC CTTCTCCTTCTTCTTCCTCCACTCACCGGCGCGAAGACGGAGAATTAGACCAAGAAGAACAGGACTACTCCATCACCAGG TCAAGGAATAAAGAAGATGAAGAGCCAGCAGAGGAAGAGATGGAAGGAATGTTCGAGAAGCCATTGACACCGAGTGATGT TGGGAAGCTGAACCGCCTCGTCATCCCAAAGCAGCACGCGGAGAAGCACTTCCCTCTTGACTCGGCGGAGAGCAAGGGGA TGTTGCTGAGTTTCGAGGACGAGTCAGGGAAGTTGTGGCGATTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTATGTC TTGACAAAAGGATGGAGCCGTTACGTCAAGGACAAACGCCTCGACGCCGGCGACGTCGTTTTGTTCCACAGACACCGCGC TCACCCTCACCGCTTCTTCATCACCTGCCGGCGGAGAAACGCCCAACCAGCACCCAATGCCGCCGCTGCCTTCTATCCTC CGGCTCCTCACCCCTTCACATACCACCCTCATCTTCATACAGGTATTGCCTCTATATCATACATTTCAAATTATCTTATC ATAATTACCAATTTTTCATTCATATATTTTTTGCATTTTTTTCTATTGATCCACGATTATTTATATAATATGTTCTTTAT GTGTTAAAATTAATTTAGGGTGAAACTTTTTTCCAACTCGTGAATCATGCTATTTTTTGTCCACATCAGATAAAGTTTTT TCTCTATGAAAATTTTAAGAATTTTTACTTATCATAATTACCAATGAGATTTTCACCCAAAAGTGAAAGTAACTGGATTT GGGAGTGGTGTGGTGTGTGGTTATGTTTTTGTAGAAAGGAGTGTAGTTTGGGTTTTATTGCACAGAATTCAGATTGCTCA AATTAACTAACTGCTCATTCTAACATGGGTGAGTGCAACACACGCGCCCCTTTTCCTTGAATTTATCATGGTAAAAACAG GATTCACTAATAACATACTCCAAATATCCAACATAATTTTGTGGTTGGTTTATTTTTTTGAAAGACAAGACAATACTATA CGAAATGAGAAAAGTATTTGAGTATTCAAAAACCAAACCAATCACAAGAGTTGTGTTTGATTTGAGTGTGTCTTTCATGT TGATAGCCTGAGGTAGCTTTGCGTATCTGAATTTGAAAGCGTTATTTTGTTGGTATATATTTATGGTTCAAATTTTTTTT GATTGAAAAATGAAGTATGGGCATTTGCACGTGTTGTAATGTTACAGGTGGAGGGTCCCAAGGTCAGAATCATAAGGAGG AGAGCGCACCGGGAGGAAACAGTTCCGGTTCAAAGGTGCTGAGGCTATTTGGGGTGAACATGGAATGCCAACTACCTGAT TCCCAAACACAACAATTCTACCACCACCATCATCAACAACCCTCTTCTTATTCTTCTCCCAATAACACTCACCATCACAT GCTACGTCAACAACCATATTAGCAGCAGCTTCTAAGAACCTCCCACTTCTCCTAACTAGATTCCCTTTTTTTAATCCCAA TCCCAAGCTTCAGGTTAAGGTGGTATCTCCTTAATTAATTGTAATCAATGACCTTGTCATTAACATGAAAAGATCAACTG TTTTTTTTAATTATTTTAAGTATAATTAGTTTAAGTTCGTGTTCAAGATTGTAGAGGATCTTTCTTGTCTTAAATTCAGG GAGATGCATGTAGGTGCAAATAAATTGTTTATTTGTTTTGTGAGATTTTCTTGTTCCCTGTCGGTCAAGCATATATTAAT CATCAACTAAGGTGTGAACGCCAGAAGGGACATGTTTTCG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0734300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCATAAACCAGCAGCAGCTATGGTGGACCCAGCACCAGCAGCAAAATCTCATTCACCCCCAGTTTCACAACCCACT TTCTTCTTCTCCTTCTCCTTCTCCTTCTTCTTCCTCCACTCACCGGCGCGAAGACGGAGAATTAGACCAAGAAGAACAGG ACTACTCCATCACCAGGTCAAGGAATAAAGAAGATGAAGAGCCAGCAGAGGAAGAGATGGAAGGAATGTTCGAGAAGCCA TTGACACCGAGTGATGTTGGGAAGCTGAACCGCCTCGTCATCCCAAAGCAGCACGCGGAGAAGCACTTCCCTCTTGACTC GGCGGAGAGCAAGGGGATGTTGCTGAGTTTCGAGGACGAGTCAGGGAAGTTGTGGCGATTCCGTTACTCCTACTGGAACA GCAGCCAGAGCTATGTCTTGACAAAAGGATGGAGCCGTTACGTCAAGGACAAACGCCTCGACGCCGGCGACGTCGTTTTG TTCCACAGACACCGCGCTCACCCTCACCGCTTCTTCATCACCTGCCGGCGGAGAAACGCCCAACCAGCACCCAATGCCGC CGCTGCCTTCTATCCTCCGGCTCCTCACCCCTTCACATACCACCCTCATCTTCATACAGGTGGAGGGTCCCAAGGTCAGA ATCATAAGGAGGAGAGCGCACCGGGAGGAAACAGTTCCGGTTCAAAGGTGCTGAGGCTATTTGGGGTGAACATGGAATGC CAACTACCTGATTCCCAAACACAACAATTCTACCACCACCATCATCAACAACCCTCTTCTTATTCTTCTCCCAATAACAC TCACCATCACATGCTACGTCAACAACCATATTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0734300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSINQQQLWWTQHQQQNLIHPQFHNPLSSSPSPSPSSSSTHRREDGELDQEEQDYSITRSRNKEDEEPAEEEMEGMFEKP LTPSDVGKLNRLVIPKQHAEKHFPLDSAESKGMLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVL FHRHRAHPHRFFITCRRRNAQPAPNAAAAFYPPAPHPFTYHPHLHTGGGSQGQNHKEESAPGGNSSGSKVLRLFGVNMEC QLPDSQTQQFYHHHHQQPSSYSSPNNTHHHMLRQQPY

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31140 View details on PTHR31140 Search for proteins/transripts with this domain View external data on PTHR31140	6	273	268	2.3E-93	–
PANTHER	PTHR31140:SF49 View details on PTHR31140:SF49 Search for proteins/transripts with this domain View external data on PTHR31140:SF49	6	273	268	2.3E-93	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	14	81	68	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	14	39	26	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	40	66	27	-	–
Gene3D	G3DSA:2.40.330.10 View details on G3DSA:2.40.330.10 Search for proteins/transripts with this domain View external data on G3DSA:2.40.330.10	67	188	122	7.0E-47	IPR015300 Show description in modal box View details on IPR015300 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF101936 View details on SSF101936 Search for proteins/transripts with this domain View external data on SSF101936	76	179	104	3.14E-32	IPR015300 Show description in modal box View details on IPR015300 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd10017 View details on cd10017 Search for proteins/transripts with this domain View external data on cd10017	76	177	102	9.63604E-30	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM01019 View details on SM01019 Search for proteins/transripts with this domain View external data on SM01019	77	178	102	4.1E-24	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02362 View details on PF02362 Search for proteins/transripts with this domain View external data on PF02362	77	178	102	6.9E-30	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50863 View details on PS50863 Search for proteins/transripts with this domain View external data on PS50863	77	179	103	14.522	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	200	228	29	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	206	226	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	247	277	31	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0734300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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