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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0734600 |
Transcript ID | LotjaGi1g1v0734600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat superfamily protein; TAIR: AT5G37570.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570; TrEMBL-Plants: tr|A0A151S1F4|A0A151S1F4_CAJCA Putative pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0734600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130825241..130825591) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCAAAAATACGGCATTAGTCCTTCACCTGATCACTTTGCTTGTATGGTTGATCTTCTGAGCCGGTCAGGTCACTT AGGGGATGCTTATGAACTCATGAAGTCAATGCATGAACCTCATGCTGGTGCCTGGGGTGCACTTCTTGGGGCATGTAAAC TCCATGGTGATTCAGATTTAGGAGAGATTGTTGCTAATCAACTTTTTGAGCTTGAGCCTCAAAATGCAGCTAACTACATC CTGTTGTCTAACATCTATGCAGCAGCAGAGCGATGGATAGATGTCTCCCTTGTGAGAAGTAGGATGAGGGAGAGGAGCGT GCAGAAGATACCCGGTTGCAGTAAACTTTAA
CDS sequence (LotjaGi1g1v0734600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAAAATACGGCATTAGTCCTTCACCTGATCACTTTGCTTGTATGGTTGATCTTCTGAGCCGGTCAGGTCACTT AGGGGATGCTTATGAACTCATGAAGTCAATGCATGAACCTCATGCTGGTGCCTGGGGTGCACTTCTTGGGGCATGTAAAC TCCATGGTGATTCAGATTTAGGAGAGATTGTTGCTAATCAACTTTTTGAGCTTGAGCCTCAAAATGCAGCTAACTACATC CTGTTGTCTAACATCTATGCAGCAGCAGAGCGATGGATAGATGTCTCCCTTGTGAGAAGTAGGATGAGGGAGAGGAGCGT GCAGAAGATACCCGGTTGCAGTAAACTTTAA
Protein sequence (LotjaGi1g1v0734600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQKYGISPSPDHFACMVDLLSRSGHLGDAYELMKSMHEPHAGAWGALLGACKLHGDSDLGEIVANQLFELEPQNAANYI LLSNIYAAAERWIDVSLVRSRMRERSVQKIPGCSKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 114 | 114 | 1.9E-11 | ||
PANTHER | 6 | 103 | 98 | 3.2E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0734600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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