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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0738600 |
| Transcript ID | LotjaGi1g1v0738600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|A0A0B2RV50|A0A0B2RV50_GLYSO F-box/FBD/LRR-repeat protein; Found in the gene: LotjaGi1g1v0738600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131296313..131298995) extracted from Lotus japonicus Gifu genome v1.2.
AAACACCATAATGCATGTAACTTCAGAATCACTCCCTTTGATTCCATTCTCTGCATCACCACTTTGATTCATCACCACTG TGACAACTGAACGAGAAGATTTGCAGAAAACTGAGAATTTCCAATTCATTTTTCATCGTCGTCTTCCTTCTTTCTGCAAA GAGGTGAGTCTTTGATTCTTGTAATTCAAACGCATGCATGTTTTATATGAATTCATGCATTCTTTGATGTATTCTGTGTT TCATTTTGAGCTTTATCGATTGAATACGCATGCCCATAGCACTGATTTTGAAAATGCATTACATTGTTACATCCCATATT AGATTCTCTTACAGAAGCTACCATTTACAATTGATTAAACCCTAAACCCTAATTTTAGATACAAGAAACCAAAATTGAAG CTTTAATCCACTCTTCACCATCTTGATTTATTCTAAGTGATCTCTGTGTTACAATTTAATTCAATAACTAATTACCAATC TATTAAAGATTGGATCTTTCAAAGCTATGCTGTGTCAATTTTTGTTGTTGCAATTACAGGCATTGGTTGAGTGAGTCTTA ATTCTTAACTTGCTAGTGTGATTTGAACATGTTTAAATGTAGATAGTGTTTGACATAACTGGAAATTTGTTGAAGGGAAT CACTATCAAATGGAGTCTGGTGCAATGGTTATTGGGTGTAGCTGTAACTTACATAAGAGGCTGATGGGAAATGAGGGTGA AGACATATTCAACACGCTACCTGAATTTGTTGTAGGTCACATACTCTCTCTTCTCCCAACAAAAGATGCAGTTCGGACTA GTGTATTATCCAAGAGTTGGTTATCTCGCTGGACATTCGTCAACAAGCTGGACTTAGATGATAGTGTGTTCTATTCTTCA AAGAAGAAAACTGTGGCAAAAAAGCACTTCATGAACTTTGTGAACAGGGCACTTCTTCTTACCGAATCTTCAAGTTTGGA CAGCTTCTCTCTTGTGATCTCTAACAAGTATGATGCATGCCTTGTTAATACATGGATCTCTAGTATCTTGAAAAGGAATG TAAAAAACCTTCGTATTAACTCACATTTTGATCAACATCTCCCCTTCTTCGTTCTTACATCTCGTTCACTTTTAGCCTTG AAGTTATTAGAAGAAGTGGAAATCAAAATGTCTTCTTGTGCTATAAGAGTCCCCACCGCCCATGTCCATTTTGGATCCCT AAAAGTCCTCAAGTTGTCTGGAATTGTATTTACCATTGACGACTATGTTAAGTATCTGCGCCTTAGATTACCGGTCCTGA AAGAGTTTGAGTCAAAAAACTGTGTTTGGTTAAATGCCATTTGTGTTACTTTGGAAGCACCACTACTTGAAAGAGTTTAC ATAGAAGACAGTAAGACAACATCACATGAGCTACGTAGGGGTGGAATCTGGATTTACGCTTGGCACCTTGCAGAATTCAC TTATTGTGGTTATGGGCTATGGCAGCATATTGTTCTGTCTGAACCATCAGTAGCTCATAACGCTTCAGCTAATATCACTA TAAATCTGCCTGTTACTCGACCAGTAGGACTTCAGGGAATACAGCTTCTCAAACAATTCAGTCAAGTGAAGCATCTCAAA TTTGACGGGTCACAGGTAAATCTTTAATTATTCTTTCTAGCAATATCAAGATCATACTTTTAATCTGCAATATCAATTGA AAACTTGTTATCAATATATAAGTTTCCAACACAAATAATTAGTTAATAGCATGTAGCATATATAAATATGTTGATTTGGG TAAAACACTAAGGGTTGGACTATAGTAGTGGCATGTATATCTATAACTACCTAGAATTAGGAGGTATCCATCTTTTTTCA CATAGGAGAATTCCATCTGTTGTATACATACCAGTTTGTTTGTTTGTCATCCAGGTTACGACACTAAAAGGAGTGGCTAA TCTACCTGTATTTGGAATGATGAGCCATTTAGAGCTTGGCTTAGTTACTGCTGAATTTTTATTAGGCCTACTTTTAAAGT CACCAGTTCTCAGGACTCTACATTTCAAGGTTGGTGCTTACTGCTTAGTAAATAAAACTAGCAACACTGCTCTGGCTGCA CTTTTTATCATATAAGTTGCTTATTATAATAAGTTGTGAAGTCCCTGTTGTGACTCATATTGTGATTAATCACTCACCAT ATTTTTTCTATGTTTCTTGACATGATTTACACTTCACACCAGACTTATATTTGACTTTGTACGCTGATTTATCATCAGGG AATATATAGCTTCGAGCAAGAGCTTTTGAATTCTGGTGTTGTGCCTGGTTGTTTGAGAGCTACCCTGCAGGTTGTGAAGT TTGAAAATTTTAATGGACTCGAGCATGAGCTGTGTTTAGCTAAATTTCTGATAGAGAATGGTGGGGTGCTGGAGAGGATG AGTTTCTCCCTTGTGAGTAGTCAGCTGGGAAAATCAAAGATCATTGAAGAATTTAAAAAGAAGTTGTTCTCATTTAAGAA ATCTTTCTCCCTTGCTATTGTGGAATTTTCGAATGATTAAGTTACTACAGAACTATGGGGTAGGCACAGTCGTACAGATC TACAATGTTTTTTTTTTGGTAGTACATATCATTTGACCTTGTGAATTTGTACCTACAAGTTATCCAGAAATGGTGATTCT GAATTTTGGGGCAAAATATATGTAACAGTATTTTAGTAGGAAG
CDS sequence (LotjaGi1g1v0738600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTGGTGCAATGGTTATTGGGTGTAGCTGTAACTTACATAAGAGGCTGATGGGAAATGAGGGTGAAGACATATT CAACACGCTACCTGAATTTGTTGTAGGTCACATACTCTCTCTTCTCCCAACAAAAGATGCAGTTCGGACTAGTGTATTAT CCAAGAGTTGGTTATCTCGCTGGACATTCGTCAACAAGCTGGACTTAGATGATAGTGTGTTCTATTCTTCAAAGAAGAAA ACTGTGGCAAAAAAGCACTTCATGAACTTTGTGAACAGGGCACTTCTTCTTACCGAATCTTCAAGTTTGGACAGCTTCTC TCTTGTGATCTCTAACAAGTATGATGCATGCCTTGTTAATACATGGATCTCTAGTATCTTGAAAAGGAATGTAAAAAACC TTCGTATTAACTCACATTTTGATCAACATCTCCCCTTCTTCGTTCTTACATCTCGTTCACTTTTAGCCTTGAAGTTATTA GAAGAAGTGGAAATCAAAATGTCTTCTTGTGCTATAAGAGTCCCCACCGCCCATGTCCATTTTGGATCCCTAAAAGTCCT CAAGTTGTCTGGAATTGTATTTACCATTGACGACTATGTTAAGTATCTGCGCCTTAGATTACCGGTCCTGAAAGAGTTTG AGTCAAAAAACTGTGTTTGGTTAAATGCCATTTGTGTTACTTTGGAAGCACCACTACTTGAAAGAGTTTACATAGAAGAC AGTAAGACAACATCACATGAGCTACGTAGGGGTGGAATCTGGATTTACGCTTGGCACCTTGCAGAATTCACTTATTGTGG TTATGGGCTATGGCAGCATATTGTTCTGTCTGAACCATCAGTAGCTCATAACGCTTCAGCTAATATCACTATAAATCTGC CTGTTACTCGACCAGTAGGACTTCAGGGAATACAGCTTCTCAAACAATTCAGTCAAGTGAAGCATCTCAAATTTGACGGG TCACAGGTTACGACACTAAAAGGAGTGGCTAATCTACCTGTATTTGGAATGATGAGCCATTTAGAGCTTGGCTTAGTTAC TGCTGAATTTTTATTAGGCCTACTTTTAAAGTCACCAGTTCTCAGGACTCTACATTTCAAGGGAATATATAGCTTCGAGC AAGAGCTTTTGAATTCTGGTGTTGTGCCTGGTTGTTTGAGAGCTACCCTGCAGGTTGTGAAGTTTGAAAATTTTAATGGA CTCGAGCATGAGCTGTGTTTAGCTAAATTTCTGATAGAGAATGGTGGGGTGCTGGAGAGGATGAGTTTCTCCCTTGTGAG TAGTCAGCTGGGAAAATCAAAGATCATTGAAGAATTTAAAAAGAAGTTGTTCTCATTTAAGAAATCTTTCTCCCTTGCTA TTGTGGAATTTTCGAATGATTAA
Protein sequence (LotjaGi1g1v0738600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESGAMVIGCSCNLHKRLMGNEGEDIFNTLPEFVVGHILSLLPTKDAVRTSVLSKSWLSRWTFVNKLDLDDSVFYSSKKK TVAKKHFMNFVNRALLLTESSSLDSFSLVISNKYDACLVNTWISSILKRNVKNLRINSHFDQHLPFFVLTSRSLLALKLL EEVEIKMSSCAIRVPTAHVHFGSLKVLKLSGIVFTIDDYVKYLRLRLPVLKEFESKNCVWLNAICVTLEAPLLERVYIED SKTTSHELRRGGIWIYAWHLAEFTYCGYGLWQHIVLSEPSVAHNASANITINLPVTRPVGLQGIQLLKQFSQVKHLKFDG SQVTTLKGVANLPVFGMMSHLELGLVTAEFLLGLLLKSPVLRTLHFKGIYSFEQELLNSGVVPGCLRATLQVVKFENFNG LEHELCLAKFLIENGGVLERMSFSLVSSQLGKSKIIEEFKKKLFSFKKSFSLAIVEFSND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 457 | 441 | 8.3E-125 | – | |
| PANTHER | 17 | 457 | 441 | 8.3E-125 | – | |
| SUPERFAMILY | 23 | 77 | 55 | 6.28E-10 | ||
| Gene3D | 26 | 250 | 225 | 1.8E-11 | ||
| Pfam | 27 | 62 | 36 | 2.5E-4 | ||
| Pfam | 382 | 423 | 42 | 4.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0738600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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