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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0739900 |
| Transcript ID | LotjaGi1g1v0739900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT2G35860.1 FASCICLIN-like arabinogalactan protein 16 precursor; Swiss-Prot: sp|Q8RWC5|FLA16_ARATH Fasciclin-like arabinogalactan protein 16; TrEMBL-Plants: tr|V7D0F6|V7D0F6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0739900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131388011..131391949) extracted from Lotus japonicus Gifu genome v1.2.
TGTTCACCCCTAGACATTAGGGTGAATGTATTCCTAACCTTACAAGTACACACTTGTTTAAATTTACATATATACCGAAA TGGTTGCTTGGCTTAGCTTGGCATTTGGCTTGGCTTGGTTGAAAGCAAACACATGGAGGTGAGAGTGTGACAACAGCACA TCAGTTTCCGTGTGGTCCCTTAACACAGGCTGTCAAAGAATAGTAGTACCTATTATGCTGCTATTCCTTTTCTTCTCTAT TTCACAAAGAAGTGGGATGGGATCTTTCTTCCCACTCAACCCCTTAACCATCAACCAAAGCAAAGGCAAGGCAGAAACTA GTAGTAGTGACTCCCATTGAAACTTTCTGACTGTGACTCACCAACCGTACCACGTTTCCTTCTTCTTCTATTCTCCTCCT CACTCCACTTTCCCATTCTTCACCAAAAAACCAGAGAACAAAAATCCATCAACAACCACTTCCTCTTTCTCTTCACGAGA AATGAGCACCATGGATTCCTCTTCCATCTATGGTGTCTCCGTCTCCACCTTCTTCTTCTTCTTCTTCTCCTTCCTTCTCA TTTCCACATTCCCCCATTCTTCATCCTCCACCACCACCACCACTCAGATCAACTCCAACTCCATCCTCGTCGCTCTTCTC GATTCCCACTACACCGAACTCGCCGAGCTCGTCGAGAAAGCCCTTCTCCTCCACAACCTCGAACAAGCCGTCGGAACCCA CAACATCACCATCTTCGCCCCCAGAAACCAAGCTCTGGAGCGCGACCTCGACCCTGAGTTCAAGCGCTTCCTCCTCGAAC CCCGGAATCTCCGCTCACTCCAAACCCTCTTGATGTCCCACATTCTCCCCGCCAGAATCTCCGACCATAACTTCCCCGCC ACCGACCGCCGCCACCGAACGCTATCCCCCGACCACCACCTCAATCTCGCCACCAACCCCACCTCCGGCAAGAAAACAGT CGACTCCGCCGAGATCCTCCGCCCAAACGATGTTCTCCGCCCTGACGGCGTCATCCACGGGATCGACAGCCTCATCGTGC CACGTTCCGTGCAGGAGGATTTCAACCGGAGGAGAAGCCTCCGCGCGATCTCTGCGGTGCTCCCGGAGGGAGCGCCGCAG GTCGATCCCCGGACCAACCGCTTGAAGAAACCAGCCCCCGTCCCAGCCGGCGCGCCTCCGGTACTCCCGATCTACGACGC GCTTGCTCCAGGACCGTCACTCGCTCCGGCGCCGGCGCCAGGACCTGGAGGACCACGCCACCACTTCAACGGCGAGAAAC AGGTGAAGGATTTCATCCAAACGCTCGTGCATTACGGCGGTTACAACGAAATGGCGGATATTCTGGTGAATCTGACCTCC CTCGCCACCGAGATGGGGAGGTTGGTTTCTGAAGGCTACGTTCTCACCGTTTTGGCTCCCAATGACGAGGCGATGGCGAA GCTGACGACGGACCAGCTGAGCGAACCGGGTGCGCCGGAGCAGATCATCTACTACCACATCATTCCCGAGTATCAGACGG AGGAGAGTATGTACAATGCGGTGAGGAGGTTCGGGAAGGTCCGGTACGACACGCTCCGGTTGCACCATAAAGTGGTGGCG CAGGAATCTGACGGCTCCGTCAAATTCGGACACGCCGATGTCTCTGCTTATCTTTTCGACCCTGATATTTACACCGACGG GAGAATCTCCGTTCAGGGGATTGACGGCGTTCTTTTGCCGCCGGAGGAGAACGACGGCGATACTCCACGCACACGCACAC GCACAACAACCCCACTTGTTAAAGTTGCTGCTAAACCCAGAAGAGGTAATTTCACTTCTATTCTCAACGTTCTTCCACTT TCTCTGTTTTTTACTGTGATTTAATTTCTTACTTTGAATTTTTTACTGGGTTGTTATTGTTCATAATTGATTGATGTGGT TTATACTAATATGGGTAGATTAGATTTAATTGAGGTAGCAAGTTTGGGGTTAAAAGTTTGCATATTTGTGATTTGTTTCA CTTTTCCTATTTTTGATCTTGGCTTTTTACTCTGTTTTTCTCCCTTTTTAGCTAGCTTGTTTAAAGGGGTTGGGTTAAAA GCACTTGGTTTTCACTTTGCACACCTTAATTATTTTTTGGTCACTCGTAATCTGGTTTTTGATCGAGCAAAATTGACGTA ATGTGATTCATATATAGCCGACCTCACTTAGCGTGTCTGGTTTTTGATCGAGTAGAATTAACGTAGTGTGATTCATATAG CAGTGGGATAAAACATTTTGTTGTCCTTGATTAGCAAAAGGCAAAAGGATGAAAGTTTTCCATTGATGTACAGTATTCTG TGCTGATTTCTAGAACTATGTATGTTAATGTGGTTTGGAGAAGAAAGTTCATGATTAAGAGAATAATAATGGGGAAGATG CAAGGAACTTGCCAAAAAAAGTTAGATATGTGGTGGAGACAAAAGAGTGTGTGATTACTCTGTCCTTTGTCTCAAGTCTC AACTAGTTCATGTGATTATTAAAGAAAACAATATGCATATAAAGAATTAAATGTGCCAAGCTGTTAAGTGTTAACCACAT TATTCTTTTCTTTCCCACCCTACCCAACCAAGGTGCTGGATCCGTCGGTCGGTGCCTTATATTATACATTGCTTCATGTC TTTTATTTACATTATATATTAAATGCATAGTCAACTAGTGTATAAATATTTTAATTATTTTATGTACTTTTTAGGAGTGA TATTATATAAAAGAATTCATTGGCTTCAACAATCCTCTGAATATATAACCTGATTTTTTGTTTTCAATCATGTGAAAATG CCTCGGTATTAGTTGACTTAACATTTTATTTACTATATTCATGTGGCAGGTAAGTTGCTGGAACTGGCCTGTAACATGGT TGGAGCTTTTGGACGAGTCTGCTAATGAAATCGCTTTCTCAGATAATCCCTTAAAAATTAGGGGAAAAAATAAAGAGTGA ATTTATATGTAAACTTGAATGGTAAGTTTATGTTTACCTAGTGTTCTTTTAATTGGTTTATTTTCCATTTATTTGGACTA TTCTAATTTCAACCACTTTTTTTCACATGTATTGTGCAGTTGTAGAGTAATACAAAGGAGCATTCTGAATCTATAGCCAG AGAGAGCGATTAAATTGCAGAACTTCCATGGAAAAACTCACAGAGGATAGCAAATTTTCTGTCATTTTGTTTCATACTGT AATTACATATCATTTTTTTATTAAATTTTTATTTTTATGTTGATTCACGGTCTCTGTATGCATAAATAACCTTCAAATAC GACACTCTCCTTCTTGCTTGCATATTTTTTGTTTCTTTTTACTGTTTGTTTGTGAAATCTCATACGTAATCTATTTTGTT CTATGGTTTCAAGTTCCAACTCGTTTTTGTCAACAAATTTAATTTTTAAACTAACTTCGAAATGGACCTCTGACCAGAAG AATAAAAAAAAAGGTGTCGGTTGTGCTAAGGGATTGTGGGTATTAATTGTGAATTAGAGTTTCATATTGGTTAAGTACGT GTAGGATGAAGAAAGAATGTGACCCCGTTAATCTAATATTTCAAGATTTTGAGTAAAGATGTGACGTTGAGTTTTTGATA GTGTTTTCTTTCCTTAGCGCATGAGCTCTCACTTTTCCCCAATACATTCACTCAAAAAGAAAAAAATAGTTGCCCCGATG GGTCAACCCACCCGCTCTGCTTAGCTTTCAACATGTTTTAAATGTGGGTTTGACGTGGTGGGTTAAAACGGATTGAAGGC TTAGACATTTCGCTCCGTTCCGTTAAGGTTGCCGGGTTGATCCGAGGAGTCAAACCTATTTTACCACCCTATATGTGGTT TATTGTCATGTTTTGTGAGAATCTTAATGCTATGACTCGATCCCTACTACATGATTACATTATGAGTGCAATTATTGAAA ATTCTTTAACAAGGAGCTC
CDS sequence (LotjaGi1g1v0739900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACCATGGATTCCTCTTCCATCTATGGTGTCTCCGTCTCCACCTTCTTCTTCTTCTTCTTCTCCTTCCTTCTCAT TTCCACATTCCCCCATTCTTCATCCTCCACCACCACCACCACTCAGATCAACTCCAACTCCATCCTCGTCGCTCTTCTCG ATTCCCACTACACCGAACTCGCCGAGCTCGTCGAGAAAGCCCTTCTCCTCCACAACCTCGAACAAGCCGTCGGAACCCAC AACATCACCATCTTCGCCCCCAGAAACCAAGCTCTGGAGCGCGACCTCGACCCTGAGTTCAAGCGCTTCCTCCTCGAACC CCGGAATCTCCGCTCACTCCAAACCCTCTTGATGTCCCACATTCTCCCCGCCAGAATCTCCGACCATAACTTCCCCGCCA CCGACCGCCGCCACCGAACGCTATCCCCCGACCACCACCTCAATCTCGCCACCAACCCCACCTCCGGCAAGAAAACAGTC GACTCCGCCGAGATCCTCCGCCCAAACGATGTTCTCCGCCCTGACGGCGTCATCCACGGGATCGACAGCCTCATCGTGCC ACGTTCCGTGCAGGAGGATTTCAACCGGAGGAGAAGCCTCCGCGCGATCTCTGCGGTGCTCCCGGAGGGAGCGCCGCAGG TCGATCCCCGGACCAACCGCTTGAAGAAACCAGCCCCCGTCCCAGCCGGCGCGCCTCCGGTACTCCCGATCTACGACGCG CTTGCTCCAGGACCGTCACTCGCTCCGGCGCCGGCGCCAGGACCTGGAGGACCACGCCACCACTTCAACGGCGAGAAACA GGTGAAGGATTTCATCCAAACGCTCGTGCATTACGGCGGTTACAACGAAATGGCGGATATTCTGGTGAATCTGACCTCCC TCGCCACCGAGATGGGGAGGTTGGTTTCTGAAGGCTACGTTCTCACCGTTTTGGCTCCCAATGACGAGGCGATGGCGAAG CTGACGACGGACCAGCTGAGCGAACCGGGTGCGCCGGAGCAGATCATCTACTACCACATCATTCCCGAGTATCAGACGGA GGAGAGTATGTACAATGCGGTGAGGAGGTTCGGGAAGGTCCGGTACGACACGCTCCGGTTGCACCATAAAGTGGTGGCGC AGGAATCTGACGGCTCCGTCAAATTCGGACACGCCGATGTCTCTGCTTATCTTTTCGACCCTGATATTTACACCGACGGG AGAATCTCCGTTCAGGGGATTGACGGCGTTCTTTTGCCGCCGGAGGAGAACGACGGCGATACTCCACGCACACGCACACG CACAACAACCCCACTTGTTAAAGTTGCTGCTAAACCCAGAAGAGGTAAGTTGCTGGAACTGGCCTGTAACATGGTTGGAG CTTTTGGACGAGTCTGCTAA
Protein sequence (LotjaGi1g1v0739900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTMDSSSIYGVSVSTFFFFFFSFLLISTFPHSSSSTTTTTQINSNSILVALLDSHYTELAELVEKALLLHNLEQAVGTH NITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPARISDHNFPATDRRHRTLSPDHHLNLATNPTSGKKTV DSAEILRPNDVLRPDGVIHGIDSLIVPRSVQEDFNRRRSLRAISAVLPEGAPQVDPRTNRLKKPAPVPAGAPPVLPIYDA LAPGPSLAPAPAPGPGGPRHHFNGEKQVKDFIQTLVHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAK LTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLHHKVVAQESDGSVKFGHADVSAYLFDPDIYTDG RISVQGIDGVLLPPEENDGDTPRTRTRTTTPLVKVAAKPRRGKLLELACNMVGAFGRVC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 8 | 457 | 450 | 1.2E-244 | – | |
| PANTHER | 8 | 457 | 450 | 1.2E-244 | – | |
| Phobius | 16 | 27 | 12 | - | – | |
| Phobius | 28 | 36 | 9 | - | – | |
| Phobius | 37 | 459 | 423 | - | – | |
| ProSiteProfiles | 44 | 185 | 142 | 16.717 | ||
| Gene3D | 45 | 188 | 144 | 3.4E-16 | ||
| SUPERFAMILY | 46 | 188 | 143 | 3.53E-17 | ||
| Pfam | 56 | 187 | 132 | 2.0E-19 | ||
| SMART | 83 | 188 | 106 | 5.6E-12 | ||
| SUPERFAMILY | 247 | 415 | 169 | 3.92E-20 | ||
| ProSiteProfiles | 268 | 411 | 144 | 11.989 | ||
| Gene3D | 280 | 416 | 137 | 5.0E-8 | ||
| Pfam | 293 | 413 | 121 | 1.7E-8 | ||
| SMART | 309 | 414 | 106 | 3.4E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0739900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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