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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0742900 |
| Transcript ID | LotjaGi1g1v0742900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TNF receptor-associated factor family protein; TAIR: AT3G11950.1 TRAF-like superfamily protein; Swiss-Prot: sp|Q54FD5|Y0931_DICDI TNF receptor-associated factor family protein DDB_G0290931; TrEMBL-Plants: tr|I1NAY7|I1NAY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131650355..131653960) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCAACAAACACCATTCTTTGGTTACAAGAGGAAGATAACAAAAATACTAGTATTGTTACATAATTTTCTTCTTAAGT CAATGATGTAATAAAATTGCATATCAAATTCAGAGGATGGCTTTTGTATTTCCATTTTGTTCACAGATGTTCAAAGAAGC TAACAAATATTCTATTTTTACCAAAAAATAAATAATAAATAGTAAAAGAAATATTGTCTGGTTAGAAAGAAGAGTGAGTA TTAAAAGGAACAGAGACTCCAATTCACCGCCTCAAAGATCGAAACTTTCTTCAAAATTGATTTCTCAAAAACAAGCTCGT ATTGTAGATCTTCATACCCATGTCGGTAAGTTCTGTTTTTCTACAATTTCTTTCTTCATTATTGAAAAATCTAGATATAG GTACTTTGTATTGTGAAGATTTCATCCTATTTGGCTTGTGATCATTTTCTTAGCTTAACTCAAATTTGGTAACAATATAT TTCACCTTTTACATTTGATTTTATAAGTGATGATGATGATGATGTCTGGAATCATAAATGGTGCACTTATGTCTTCAGCA TTGTGCATTTGATGGTGAAATCTTTCTTGCCTCATATGAGAGCTATAAATCACTCACTAGATAGTAACAGTATATAACAA TGAATTTAAAGAAATTTAAATGTGATTTCATGTCAAGGATGTGAAAGAGTATATAATGATGATTCATTAATGAAACTTGT TTCTAGATATCATCAAGCATGGATTTGCCTACCATTGATGTGGACCTTGGGCCTAGGAAGATTGAGGATGAGAGAGAGGG AGGTCCCTTGTTCCATTGTGATCTTTGTGATACAGAGGTAGTTCACAAGCTGGCTCAAATGTTCCTTCCGGGACTAGCCT CCGCTTGTGTTGATAACACCTCAGGAGACCTCTTCAAGACTCCCGGGTTGGTGGCTAATGATTTGAGAAAGGAAATGATA GATTATCTTACCCTGAGAAGCGAATCGTTTGTTGCCGAGTCTGTTATCTTGGAAGGGGGCCCGGACGGTGAAGAATCGGA TCATCCTTTTGATATCATTTCAAATTTCGTTGATGACTTTGTGAGTTTAAAGAGGAATTTGTTTAGCCGGGTTTCGGGAT GGTTGCTGAGTGAGAAGAGAGAGGACAAGATAGACGATTTTGTTCAGGAGATGGAAATGAAAGGCTTTTGGACACTTGAT AGAAGGGAAACCATTGCAGAAACTTTGCTTAAGAATGTGGACTTTGAGAACTCGTTTCATTGCAGCATGAATTTTAACTC TAAGGAAGAGCTTGCCAGTCATGTTACTGGCTGCAACTTTAGAACCATGATTTGCCAAAATGAGGGGTGCAATTCAAGAT TTTGTGCAGGTCATTTGAAGAAGCATGATTCAACATGTCCTTTCAAGATAATTCAATGTGAACAGAAATGTTCAGATAAC ATCATGAGACGGGATATGGACAGGCACTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTCTTTGCAGTGGG TTGCCGATCAGCGGTTGCGCAATGTATGATCGAAAAACATTTTTCGGATGATATTCGTTCTCACTTGTGGCACTTGCTTA AAGGCATCCACAAGGAAGCATCTGGGGAAGATCTTAAACGACGAGTGGACCAAATTGTAGAGGTAAGTCTATGTAAATAA TAGTGACAAAGGGTGCTTTGAAGCCTAAAATTTCCTCCACTGAAAATCAATACTGCCTTTTTAACTGCTGAAGTTGTCAG ACAAAATGTTTTATTGAAAAACTTTGAACCATGAATTCATAGCAACAGTAAATATTCTCATTTTAGGTTGAGGTCATTCA TGATGAAGGTATATGGAAGGAAATCATTGTCTTTGGATAAAGTAAGTTATATGTGGCCCATATCCCCCCCTCCGCACATA CATATGTATTGGTAATTATTCAGAAATCCTAAAATTTCCAATGCTGAGGCTTTTCATTATCAAAAATTTATGTATTATAC ATACATGCCAATGCATTGTCAAGGACAATTTGGATAGTTCACCATCTATTTATTGTTAATAGATTGTATTTGGAAACTTC TTACTTTTTAAATTCTGCATTAATTGTTGTTTTCATTTTTACATGCTTACTATCTATGCAGCAAGTTTACAAAAAGAAGG CAACATGATGAATTTTATAATATGAAACATCTATATTATCCTAGCCAAAAGGTTTTGAGAATGAATTTGGTTTTATCCTA GAGTTGATAGACGTCATAATTTTTCGCTTTAAATCATCCATTGATGAAGACACGAAATTGCAAAATTTTATTATTAGTTA CAATTTATTGTTCTCTATCAGTTGTAAGAGATTATACCTAGTTACTTTGTTCTGATTCAAACTTTTCGTTTTTTGTGATA GGCATCATCAAGCAGCCAATTAGCAAAGGCTCGAGATGTTAGATCTTTAACCTTCGTTGTCAAGGATATTGAAGCTAAGC TAGGGCCTTTGGAAGTGAGTGTTGTGGAGAAAAATAATGCAGAGATTTCCCCAAAAAGTGATGATGATGGGGAAGACAGT GACACCAATACAAATGTCACTGAACAGAGCACACAAGCTTCTCATATCACTAATTCATCAGATACGGCTCAAGGGAGCGA CATTGTAAATACGCATAATGCGGAGAATACTACTAAGAATGAAGATAGTGAACACAGGCGTGTTGAAAACAAGAGCAATG AAGAGAAGACACAGACTTCAAATGAACTACCTGATAAAGTTAAAAATGATGTTGTAAAGGAAGACAGTGCAGAGATTTAC AAGGACATTAAAGATGTTGCAGCTAGTGAATTAAAAACCGCAGGCAATGAAGAGAACACTATGGACAATTCATCTGAAAA AATCAGAGTCACAGATGATGACAGTCCAAAGAATAGCATAAAAAACAGATCTATTGAAGGTAGTAACTTCAAAGATAAGG ATAATGAACAAAGCATACAAGATATGAAAATAGAAACTCAGGGTAGTGCAGAGAATAATGTCAAGAACAAGAATGTTGAA GATGATAACTTAAAAGAGAACACAGAAACTTTAAAAGTGTAAAGTTTATCAAATTAATGTACATGATGGTGGACATAGTG CAGAGAGTAATGTCACACAAAACATGCAGACATACTTTCAAGTTTCAACCAAGTTCATTTCATTAGATAAACCTGAAAGA CTGATTCAGGCTTCCAACAATTCTCACATGCTGAATCTTTATGCAGAGAAGGTTTTCAATTTTGCAAGTAATAGCAAATG CTGTCTTTTGTTTTTGTTAAGCTCTAGTATCATTCAGTCATTTATACCTTCCTTTCCTTTCCCATTTCAATTGTTACATA CATTTCTTGTGTTGTTTTTCTTCAACGTCTGGTGATGAACTTAGGTGACACTGGATATTTTCATCTCTCAGCTGTTTTTG CTAGGACCTTTATTATTTCCCCCATTTATCAATTAATCATAATGCTCCCTAATGCATAGAAGCATTTGCTGAAATGTTTA AAAGGGGGAGCCCTTGGATTCAGAGTGTAGAATATTTTGGTCAAAGTGATAATATTTACTAAGCAATGTGTTTCTTTACT AACAGA
CDS sequence (LotjaGi1g1v0742900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATATCATCAAGCATGGATTTGCCTACCATTGATGTGGACCTTGGGCCTAGGAAGATTGAGGATGAGAGAGAGGG AGGTCCCTTGTTCCATTGTGATCTTTGTGATACAGAGGTAGTTCACAAGCTGGCTCAAATGTTCCTTCCGGGACTAGCCT CCGCTTGTGTTGATAACACCTCAGGAGACCTCTTCAAGACTCCCGGGTTGGTGGCTAATGATTTGAGAAAGGAAATGATA GATTATCTTACCCTGAGAAGCGAATCGTTTGTTGCCGAGTCTGTTATCTTGGAAGGGGGCCCGGACGGTGAAGAATCGGA TCATCCTTTTGATATCATTTCAAATTTCGTTGATGACTTTGTGAGTTTAAAGAGGAATTTGTTTAGCCGGGTTTCGGGAT GGTTGCTGAGTGAGAAGAGAGAGGACAAGATAGACGATTTTGTTCAGGAGATGGAAATGAAAGGCTTTTGGACACTTGAT AGAAGGGAAACCATTGCAGAAACTTTGCTTAAGAATGTGGACTTTGAGAACTCGTTTCATTGCAGCATGAATTTTAACTC TAAGGAAGAGCTTGCCAGTCATGTTACTGGCTGCAACTTTAGAACCATGATTTGCCAAAATGAGGGGTGCAATTCAAGAT TTTGTGCAGGTCATTTGAAGAAGCATGATTCAACATGTCCTTTCAAGATAATTCAATGTGAACAGAAATGTTCAGATAAC ATCATGAGACGGGATATGGACAGGCACTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTCTTTGCAGTGGG TTGCCGATCAGCGGTTGCGCAATGTATGATCGAAAAACATTTTTCGGATGATATTCGTTCTCACTTGTGGCACTTGCTTA AAGGCATCCACAAGGAAGCATCTGGGGAAGATCTTAAACGACGAGTGGACCAAATTGTAGAGGCATCATCAAGCAGCCAA TTAGCAAAGGCTCGAGATGTTAGATCTTTAACCTTCGTTGTCAAGGATATTGAAGCTAAGCTAGGGCCTTTGGAAGTGAG TGTTGTGGAGAAAAATAATGCAGAGATTTCCCCAAAAAGTGATGATGATGGGGAAGACAGTGACACCAATACAAATGTCA CTGAACAGAGCACACAAGCTTCTCATATCACTAATTCATCAGATACGGCTCAAGGGAGCGACATTGTAAATACGCATAAT GCGGAGAATACTACTAAGAATGAAGATAGTGAACACAGGCGTGTTGAAAACAAGAGCAATGAAGAGAAGACACAGACTTC AAATGAACTACCTGATAAAGTTAAAAATGATGTTGTAAAGGAAGACAGTGCAGAGATTTACAAGGACATTAAAGATGTTG CAGCTAGTGAATTAAAAACCGCAGGCAATGAAGAGAACACTATGGACAATTCATCTGAAAAAATCAGAGTCACAGATGAT GACAGTCCAAAGAATAGCATAAAAAACAGATCTATTGAAGGTAGTAACTTCAAAGATAAGGATAATGAACAAAGCATACA AGATATGAAAATAGAAACTCAGGGTAGTGCAGAGAATAATGTCAAGAACAAGAATGTTGAAGATGATAACTTAAAAGAGA ACACAGAAACTTTAAAAGTGTAA
Protein sequence (LotjaGi1g1v0742900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSISSSMDLPTIDVDLGPRKIEDEREGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGLVANDLRKEMI DYLTLRSESFVAESVILEGGPDGEESDHPFDIISNFVDDFVSLKRNLFSRVSGWLLSEKREDKIDDFVQEMEMKGFWTLD RRETIAETLLKNVDFENSFHCSMNFNSKEELASHVTGCNFRTMICQNEGCNSRFCAGHLKKHDSTCPFKIIQCEQKCSDN IMRRDMDRHCITVCPMKLVNCPFFAVGCRSAVAQCMIEKHFSDDIRSHLWHLLKGIHKEASGEDLKRRVDQIVEASSSSQ LAKARDVRSLTFVVKDIEAKLGPLEVSVVEKNNAEISPKSDDDGEDSDTNTNVTEQSTQASHITNSSDTAQGSDIVNTHN AENTTKNEDSEHRRVENKSNEEKTQTSNELPDKVKNDVVKEDSAEIYKDIKDVAASELKTAGNEENTMDNSSEKIRVTDD DSPKNSIKNRSIEGSNFKDKDNEQSIQDMKIETQGSAENNVKNKNVEDDNLKENTETLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 440 | 423 | 8.2E-160 | ||
| PANTHER | 18 | 440 | 423 | 8.2E-160 | – | |
| Gene3D | 221 | 285 | 65 | 1.5E-9 | ||
| ProSiteProfiles | 222 | 269 | 48 | 12.526 | ||
| Pfam | 222 | 280 | 59 | 6.9E-11 | ||
| MobiDBLite | 352 | 437 | 86 | - | – | |
| MobiDBLite | 370 | 403 | 34 | - | – | |
| MobiDBLite | 404 | 437 | 34 | - | – | |
| MobiDBLite | 458 | 540 | 83 | - | – | |
| MobiDBLite | 469 | 507 | 39 | - | – | |
| MobiDBLite | 522 | 540 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0742900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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