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LotjaGi1g1v0744100.2

Overview

Field Value
Gene ID LotjaGi1g1v0744100
Transcript ID LotjaGi1g1v0744100.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description RNA binding protein, putative; TAIR: AT4G03110.1 RNA-binding protein-defense related 1; Swiss-Prot: sp|Q8LFS6|BRN1L_ARATH RNA-binding protein BRN1; TrEMBL-Plants: tr|I1JQF9|I1JQF9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0744100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:131761580..131762363) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGCGGCCCGATCTTGGTCCTAG TATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAA TGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAGC AACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTTTGTTATCTATGTCTTATACGTGCTT GGGTATAAATGGATTCATTCGCTGATGTATATTTCTATTTTTATCACCGCTCTTTCCTTACAACAAGAAAGGTTACTAGG TGATATTCTGCTTATTACTTAATTTTGTTACTTAGGTCCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAAT TCGGAGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCTAAAGTTTTTGTTGATAAAGCAACC GGTGTTAGTAAATGTTTTGGTAAGCCTATGACTCCATTTGTTGTTGAATTTGATGGGTTTTGTGTGGTGCTTGTGTTTAA TGAGCTCTGTTTGCAGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCATTAGTATGATGAATGGATATCA ACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTAAACCTTACTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0744100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGCGGCCCGATCTTGGTCCTAG TATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAA TGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAGC AACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGGTTTGTTAGCTATGATTCACCAGAAGC TGCTCAATCCGCCATTAGTATGATGAATGGATATCAACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACA AACCGGGTAAACCTTACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0744100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAYHAGMISPRPMSSPPGSVSPAGGNS NSGTPSGPSKNSGGQVEGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012:SF771
1 73 73 3.5E-31 –
MobiDBLite
mobidb-lite
1 27 27 - –
PANTHER
PTHR24012
1 73 73 3.5E-31 –
MobiDBLite
mobidb-lite
58 104 47 - –
MobiDBLite
mobidb-lite
72 98 27 - –
Gene3D
G3DSA:3.30.70.330
87 129 43 9.5E-11
IPR012677
Pfam
PF00076
97 126 30 3.8E-6
IPR000504
SUPERFAMILY
SSF54928
97 136 40 1.63E-10
IPR035979
PANTHER
PTHR24012:SF771
98 134 37 3.5E-31 –
PANTHER
PTHR24012
98 134 37 3.5E-31 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0744100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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