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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0744100 |
| Transcript ID | LotjaGi1g1v0744100.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT4G03110.1 RNA-binding protein-defense related 1; Swiss-Prot: sp|Q8LFS6|BRN1L_ARATH RNA-binding protein BRN1; TrEMBL-Plants: tr|A0A072UF20|A0A072UF20_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi1g1v0744100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131761580..131766142) extracted from Lotus japonicus Gifu genome v1.2.
TCTAGCACCGGCGGTGGCGGTGGCGAGGAAGAGGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACGGA AGATGAACTGCTCACAATGTTCAAGGAGTTCGCCTTGGTCGATGAAGTCAACATCATCAAGGATAAAGCCACACGCGCTT CTCGAGGTCAATTTCATTTCTCCTCTCGCATTCTCCGCTCTCTCTTCAAATCTCAAATCTCTTCTTCTTCTTCTTCTTCT TCTTCTTCAATTCAACCCTAATTTCCCGCTCCACTTGCAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGCTGA TAAGGCAGTCAATGCGTGTCACAACAAGAAAACGCTACCCGGGGTGAGTCATTCGTCATTCGTCATCTTCTCATCCCTAT TTTTGTGCAATGTTGTGATTCTGTTGGGTATTAATGGCTGCTGCTGTTGCTACTTTAATAGTCATTGATTGATGCTGACG AGTACTGCTTTTTAGTAGTGAGTGAGTGAGTGTGTCTTAATTTGGCAATGGCGTTTGTCTAATTTTAGCAATTTATGTAG CGGTACCTACTATTTTTGGGTAACCGCTTCAATTCACTCTTTCGGCTTTCATGATTGGTATTAATTTGGTGTGTTTTCTT TTCAAGTTTTCATATTGGTCAATGGAAGCCCCTGGGTCAAGTTTCTGATTTTGATGCCAATGAATGAGTCATTACTATCT TAGTTACATTTTAGTTAGTCTGAGCCTCACATGCATAGGCAGCTGAGCACTAGCAGGTGCAGATGCAGAAATGAAAACCA ATTCCTGCAGAAGGTTATTATAATGTATTGATGCAGCAGCATTACATATTGTTTGGTGCTTTGGTTGGAGGGGAATGGAG GAGAGGGGAGGGGAAAAGAGGGATTTTTTTTATACTGAGTTTTGTTCAGATTTTAGGAGGGAAGGAGAATGGAGGGAGGC AAAAACCCCTCATAACTCATTTTTTTTGTCTCCCCTACAAAAGTGGAGGATTTTTAGGGAAAATCATTGGATGACAAAAA TGCCCTTCCTCGTGTTTGGAAACTCAAAATTATATTTTAAAATCAAGGGCAATGGAAGTAAATTTGTTTTAAAAACTTGA ACCAAACAAGAAAGAGGTTGTTTCCCCACCCTTTCCCACCCTTCCCGTCCTCTTAATCAAATGTGATAAGAATTAAAACC CCTCTCCCCCTCTTAAAAGTTATGGAATTTATGTTTCTTATTGTGTAGTCCAATAGAAATCATTTTGACAGTGGATTATT CTTCTTTCAGAAGATGTTTCTTTTCTATTAACTTTTTGGGATTTTCTGACATAAGAATTATATGATTTGGCTCCTATAAA GTGCGGGGGCTCACTTTATCACTTTAGAAAATAAAGTGTAAGGATAACCATTAATTGAAAAATCATCAGTTGAACTTGTG ATACAACATATTTGCATCCATGACAAATGAAGTTACTTAAATCTCAACAGTTGATTTTCTGACAGACAGTTTTACTTTAG CATTTTATCTTCTCAAGTGTAGTTGCTCACTTTAGGAGCTAAATCCAAATTCATATTAACATACATATACCCTTCTAGGT CATGCTTCACTATAAGGAGGTCACTAATATTCAAATTTGGGCTTCTTACTGCATGATGAGTTGTGTTTGTTTGACTATTC CAGATGGTTATGAACTAAATATGTTAATATGATTGAAAAAAGTTGGTTTCTTAATTACCCAAAACTTTCCATGGAGCAAT GAAGTAATGATCTAATGGATGTTAATCTTGCTTCAATAACCCTGTGTGATACGTTTATTTTCATTCTGATTGGGAAGCAT CCTGTGTTTTCATCTGACTCAGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGGTGTGA TATTTTTATTATTTAATTAAAAAAATTGTTCGGTAGATCAACTTCTTAAGTTCACTTTTGCTGAAATTCCTTTGTTATTC ACTTATGTTTGAATCAGAACACAAGCTCTTCATTGGCATGCTTCCAAAAAATGTTTCTGAAGTTGAAGTATCCGCACTTT TCTCCAATTATGGAACTATAAAAGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTGCTCACTTTACAGCT TAATTCATCCTTTATTCTTCTAGGGCAATATTGTTTCTTAACCACAAGGTTTTATTCACATTTCTACTATTTTCTGGTAG GTTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAG GTAAGTGTTCACTGAAACCATCACTAAATTTTTTAGTCCTACTTTTATTGTGGTAGAAGTGGAGCTAGTAGTGTAATATA ATGAACGTGTTCAAAATTTTCATCTATTTCTGTATTTTATTGATGTAGTGAAGGAGACAGTTAGATTTAATGTACGTGAT GGATCTTATTGTTATCTGATTGTTAATGTTTAGCAGTTCAGTGGTACTATCTGTAGTTTTGCTGTTGCAATGTGTGCAAA GACAGGGCTTTATGACCGAAACCATGACTAAGATGGCAGGCCAGGATTAATCATTCATACATCGCATGGACTATTTTATA TAGGACATGGTTTTTGGCTTAAATGTGATAGAATGGAAAGTGCATGTTTTTAAACTTAATTACAATTTTAGTTGTAAATG GTGTTTGCAGTATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATCCTGTTGGTGAGGAATGGGTTTGGATCCTCTCCA TCCATGTTCCCTCCATCCTCTCTCCATCCAAATCTGAGCCATTGATTTTGAAATTTAAAGGCTTGGATCAATTTAAGAAG AGAGAGAAAAAATGAATTGTATTTAAAGGCTTGGATCAATTTAAGAAGAGAGAGAAAACATGAATTAATCCTCACCTTTA AAATTTAAAATCGATGGCTCAGATTTTGGATGGAGAGGGGATGGAGAGAAGTTGGATGGAGAGGATCCAAATCCGTGAGG AATGTAAACATTTAATTTAATCATATGTAGTTATATTATATATGAAATATGTAGATTCATGAATTAAAGCTCACGAACTT GCAAAATGGTGCCACAGTGGGGTTGCACTAGCAAATTATCCATTCACAACCAAATGGATTAGGATATACTAAAAAATTAC ATTTTCTGTTGGCAACTATTCTTCAAGTGATATTACTGACAAAGAATGACGTTTGATACTTCTTTCTTGTACTGCGTTTG AATTACTTAGTCATTTTTTTTTGTTTAGTCAGTCTTGTTCTCTACACTAACGGCAATTGTGATCTGATATTTGTTTTTCT TCCGTAGGGATCTAGTGTTCCTTTAGTTGTAAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAG CGCAGTCCCAAGCTTCTAATGTACCTCATGCTGATTCTCAGCACCCCTCATTGTTCGGAGCCATGCCTATGGGTTATGTT CCTCCTTATAACGGATATGGTTATCAGGTTAGCTCTATTATAATACACCGTGATACTGTAATGTAGCAATTTTTTCTTTA TTCATGCAATTGTTCTTTGGCATAATCATGCAATTGTTCTTTGACATAATCATGCCATCCCATAAGAAATCATTACATCT ATGTATTAATGCTGTTCTTGATGGGATTTGTCTGTGATCATCTTTTTCTCTTCATAGGCTCCTGGCAGTTATGGGCTCAT GCCATACCGGATGCCACCAATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGC GGCCCGATCTTGGTCCTAGTATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTG CCAGGTCTACAACATCCAATGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGTTTC ACCTGCTGGTGGAAATAGCAACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTTTGTTAT CTATGTCTTATACGTGCTTGGGTATAAATGGATTCATTCGCTGATGTATATTTCTATTTTTATCACCGCTCTTTCCTTAC AACAAGAAAGGTTACTAGGTGATATTCTGCTTATTACTTAATTTTGTTACTTAGGTCCACCTGGTGCCAATCTATTTATT TATCACATACCTCAAGAATTCGGAGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCTAAAGT TTTTGTTGATAAAGCAACCGGTGTTAGTAAATGTTTTGGTAAGCCTATGACTCCATTTGTTGTTGAATTTGATGGGTTTT GTGTGGTGCTTGTGTTTAATGAGCTCTGTTTGCAGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCATTA GTATGATGAATGGATATCAACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTAAACCTTAC TGA
CDS sequence (LotjaGi1g1v0744100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGAAGATGAACTGCTCACAATGTTCAAGGAGTTCGCCTTGGTCGATGAAGTCAACATCATCAAGGATAAAGCCAC ACGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGCTGATAAGGCAGTCAATGCGTGTCACAACA AGAAAACGCTACCCGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAGCTC TTCATTGGCATGCTTCCAAAAAATGTTTCTGAAGTTGAAGTATCCGCACTTTTCTCCAATTATGGAACTATAAAAGATTT ACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTG CTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGATCTAGTGTTCCTTTAGTTGTAAAATGGGCTGATACTGAAAAG GAAAGACAAGCTCGAAGAGCTCAGAAAGCGCAGTCCCAAGCTTCTAATGTACCTCATGCTGATTCTCAGCACCCCTCATT GTTCGGAGCCATGCCTATGGGTTATGTTCCTCCTTATAACGGATATGGTTATCAGGCTCCTGGCAGTTATGGGCTCATGC CATACCGGATGCCACCAATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGCGG CCCGATCTTGGTCCTAGTATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTTGC TGGTGGAAATAGCAACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTCCACCTGGTGCCA ATCTATTTATTTATCACATACCTCAAGAATTCGGAGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATA AGCGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGTAAATGTTTTGGGTTTGTTAGCTATGATTCACCAGAAGCTGC TCAATCCGCCATTAGTATGATGAATGGATATCAACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAAC CGGGTAAACCTTACTGA
Protein sequence (LotjaGi1g1v0744100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKL FIGMLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEK ERQARRAQKAQSQASNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGFHNMMPHMNHGNALR PDLGPSMNPRNYHVPPASYVSSYPAVAGGNSNSGTPSGPSKNSGGQVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVI SAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 269 | 269 | 2.1E-204 | – | |
| Pfam | 1 | 56 | 56 | 5.4E-11 | ||
| ProSiteProfiles | 1 | 71 | 71 | 11.537 | ||
| SMART | 1 | 67 | 67 | 5.3E-4 | ||
| PANTHER | 1 | 269 | 269 | 2.1E-204 | – | |
| Gene3D | 1 | 74 | 74 | 2.4E-17 | ||
| CDD | 1 | 67 | 67 | 2.51444E-29 | – | |
| SUPERFAMILY | 1 | 72 | 72 | 4.16E-14 | ||
| Gene3D | 75 | 167 | 93 | 2.8E-23 | ||
| ProSiteProfiles | 78 | 158 | 81 | 15.579 | ||
| SUPERFAMILY | 78 | 373 | 296 | 4.01E-43 | ||
| CDD | 79 | 154 | 76 | 4.85886E-35 | – | |
| SMART | 79 | 154 | 76 | 1.7E-16 | ||
| Pfam | 80 | 143 | 64 | 6.1E-16 | ||
| MobiDBLite | 160 | 184 | 25 | - | – | |
| MobiDBLite | 168 | 182 | 15 | - | – | |
| Gene3D | 266 | 370 | 105 | 1.2E-27 | ||
| MobiDBLite | 268 | 284 | 17 | - | – | |
| MobiDBLite | 268 | 288 | 21 | - | – | |
| PANTHER | 282 | 373 | 92 | 2.1E-204 | – | |
| PANTHER | 282 | 373 | 92 | 2.1E-204 | – | |
| ProSiteProfiles | 293 | 371 | 79 | 17.541 | ||
| SMART | 294 | 367 | 74 | 6.8E-25 | ||
| CDD | 295 | 367 | 73 | 1.36638E-46 | – | |
| Pfam | 295 | 365 | 71 | 1.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0744100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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