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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0744100 |
| Transcript ID | LotjaGi1g1v0744100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT4G03110.1 RNA-binding protein-defense related 1; Swiss-Prot: sp|Q8LFS6|BRN1L_ARATH RNA-binding protein BRN1; TrEMBL-Plants: tr|A0A072U4V5|A0A072U4V5_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi1g1v0744100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131761580..131766145) extracted from Lotus japonicus Gifu genome v1.2.
AAATCTAGCACCGGCGGTGGCGGTGGCGAGGAAGAGGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGAC GGAAGATGAACTGCTCACAATGTTCAAGGAGTTCGCCTTGGTCGATGAAGTCAACATCATCAAGGATAAAGCCACACGCG CTTCTCGAGGTCAATTTCATTTCTCCTCTCGCATTCTCCGCTCTCTCTTCAAATCTCAAATCTCTTCTTCTTCTTCTTCT TCTTCTTCTTCAATTCAACCCTAATTTCCCGCTCCACTTGCAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGC TGATAAGGCAGTCAATGCGTGTCACAACAAGAAAACGCTACCCGGGGTGAGTCATTCGTCATTCGTCATCTTCTCATCCC TATTTTTGTGCAATGTTGTGATTCTGTTGGGTATTAATGGCTGCTGCTGTTGCTACTTTAATAGTCATTGATTGATGCTG ACGAGTACTGCTTTTTAGTAGTGAGTGAGTGAGTGTGTCTTAATTTGGCAATGGCGTTTGTCTAATTTTAGCAATTTATG TAGCGGTACCTACTATTTTTGGGTAACCGCTTCAATTCACTCTTTCGGCTTTCATGATTGGTATTAATTTGGTGTGTTTT CTTTTCAAGTTTTCATATTGGTCAATGGAAGCCCCTGGGTCAAGTTTCTGATTTTGATGCCAATGAATGAGTCATTACTA TCTTAGTTACATTTTAGTTAGTCTGAGCCTCACATGCATAGGCAGCTGAGCACTAGCAGGTGCAGATGCAGAAATGAAAA CCAATTCCTGCAGAAGGTTATTATAATGTATTGATGCAGCAGCATTACATATTGTTTGGTGCTTTGGTTGGAGGGGAATG GAGGAGAGGGGAGGGGAAAAGAGGGATTTTTTTTATACTGAGTTTTGTTCAGATTTTAGGAGGGAAGGAGAATGGAGGGA GGCAAAAACCCCTCATAACTCATTTTTTTTGTCTCCCCTACAAAAGTGGAGGATTTTTAGGGAAAATCATTGGATGACAA AAATGCCCTTCCTCGTGTTTGGAAACTCAAAATTATATTTTAAAATCAAGGGCAATGGAAGTAAATTTGTTTTAAAAACT TGAACCAAACAAGAAAGAGGTTGTTTCCCCACCCTTTCCCACCCTTCCCGTCCTCTTAATCAAATGTGATAAGAATTAAA ACCCCTCTCCCCCTCTTAAAAGTTATGGAATTTATGTTTCTTATTGTGTAGTCCAATAGAAATCATTTTGACAGTGGATT ATTCTTCTTTCAGAAGATGTTTCTTTTCTATTAACTTTTTGGGATTTTCTGACATAAGAATTATATGATTTGGCTCCTAT AAAGTGCGGGGGCTCACTTTATCACTTTAGAAAATAAAGTGTAAGGATAACCATTAATTGAAAAATCATCAGTTGAACTT GTGATACAACATATTTGCATCCATGACAAATGAAGTTACTTAAATCTCAACAGTTGATTTTCTGACAGACAGTTTTACTT TAGCATTTTATCTTCTCAAGTGTAGTTGCTCACTTTAGGAGCTAAATCCAAATTCATATTAACATACATATACCCTTCTA GGTCATGCTTCACTATAAGGAGGTCACTAATATTCAAATTTGGGCTTCTTACTGCATGATGAGTTGTGTTTGTTTGACTA TTCCAGATGGTTATGAACTAAATATGTTAATATGATTGAAAAAAGTTGGTTTCTTAATTACCCAAAACTTTCCATGGAGC AATGAAGTAATGATCTAATGGATGTTAATCTTGCTTCAATAACCCTGTGTGATACGTTTATTTTCATTCTGATTGGGAAG CATCCTGTGTTTTCATCTGACTCAGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGGTG TGATATTTTTATTATTTAATTAAAAAAATTGTTCGGTAGATCAACTTCTTAAGTTCACTTTTGCTGAAATTCCTTTGTTA TTCACTTATGTTTGAATCAGAACACAAGCTCTTCATTGGCATGCTTCCAAAAAATGTTTCTGAAGTTGAAGTATCCGCAC TTTTCTCCAATTATGGAACTATAAAAGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTGCTCACTTTACA GCTTAATTCATCCTTTATTCTTCTAGGGCAATATTGTTTCTTAACCACAAGGTTTTATTCACATTTCTACTATTTTCTGG TAGGTTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATG GAGGTAAGTGTTCACTGAAACCATCACTAAATTTTTTAGTCCTACTTTTATTGTGGTAGAAGTGGAGCTAGTAGTGTAAT ATAATGAACGTGTTCAAAATTTTCATCTATTTCTGTATTTTATTGATGTAGTGAAGGAGACAGTTAGATTTAATGTACGT GATGGATCTTATTGTTATCTGATTGTTAATGTTTAGCAGTTCAGTGGTACTATCTGTAGTTTTGCTGTTGCAATGTGTGC AAAGACAGGGCTTTATGACCGAAACCATGACTAAGATGGCAGGCCAGGATTAATCATTCATACATCGCATGGACTATTTT ATATAGGACATGGTTTTTGGCTTAAATGTGATAGAATGGAAAGTGCATGTTTTTAAACTTAATTACAATTTTAGTTGTAA ATGGTGTTTGCAGTATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATCCTGTTGGTGAGGAATGGGTTTGGATCCTCT CCATCCATGTTCCCTCCATCCTCTCTCCATCCAAATCTGAGCCATTGATTTTGAAATTTAAAGGCTTGGATCAATTTAAG AAGAGAGAGAAAAAATGAATTGTATTTAAAGGCTTGGATCAATTTAAGAAGAGAGAGAAAACATGAATTAATCCTCACCT TTAAAATTTAAAATCGATGGCTCAGATTTTGGATGGAGAGGGGATGGAGAGAAGTTGGATGGAGAGGATCCAAATCCGTG AGGAATGTAAACATTTAATTTAATCATATGTAGTTATATTATATATGAAATATGTAGATTCATGAATTAAAGCTCACGAA CTTGCAAAATGGTGCCACAGTGGGGTTGCACTAGCAAATTATCCATTCACAACCAAATGGATTAGGATATACTAAAAAAT TACATTTTCTGTTGGCAACTATTCTTCAAGTGATATTACTGACAAAGAATGACGTTTGATACTTCTTTCTTGTACTGCGT TTGAATTACTTAGTCATTTTTTTTTGTTTAGTCAGTCTTGTTCTCTACACTAACGGCAATTGTGATCTGATATTTGTTTT TCTTCCGTAGGGATCTAGTGTTCCTTTAGTTGTAAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGA AAGCGCAGTCCCAAGCTTCTAATGTACCTCATGCTGATTCTCAGCACCCCTCATTGTTCGGAGCCATGCCTATGGGTTAT GTTCCTCCTTATAACGGATATGGTTATCAGGTTAGCTCTATTATAATACACCGTGATACTGTAATGTAGCAATTTTTTCT TTATTCATGCAATTGTTCTTTGGCATAATCATGCAATTGTTCTTTGACATAATCATGCCATCCCATAAGAAATCATTACA TCTATGTATTAATGCTGTTCTTGATGGGATTTGTCTGTGATCATCTTTTTCTCTTCATAGGCTCCTGGCAGTTATGGGCT CATGCCATACCGGATGCCACCAATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCAT TGCGGCCCGATCTTGGTCCTAGTATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCT GTGCCAGGTCTACAACATCCAATGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGT TTCACCTGCTGGTGGAAATAGCAACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTTTGT TATCTATGTCTTATACGTGCTTGGGTATAAATGGATTCATTCGCTGATGTATATTTCTATTTTTATCACCGCTCTTTCCT TACAACAAGAAAGGTTACTAGGTGATATTCTGCTTATTACTTAATTTTGTTACTTAGGTCCACCTGGTGCCAATCTATTT ATTTATCACATACCTCAAGAATTCGGAGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCTAA AGTTTTTGTTGATAAAGCAACCGGTGTTAGTAAATGTTTTGGTAAGCCTATGACTCCATTTGTTGTTGAATTTGATGGGT TTTGTGTGGTGCTTGTGTTTAATGAGCTCTGTTTGCAGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCA TTAGTATGATGAATGGATATCAACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTAAACCT TACTGA
CDS sequence (LotjaGi1g1v0744100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTATGGGTTATGTTCCTCCTTATAACGGATATGGTTATCAGGCTCCTGGCAGTTATGGGCTCATGCCATACCGGAT GCCACCAATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGCGGCCCGATCTTG GTCCTAGTATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAA CATCCAATGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGTTTCACCTGCTGGTGG AAATAGCAACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTCCACCTGGTGCCAATCTAT TTATTTATCACATACCTCAAGAATTCGGAGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCT AAAGTTTTTGTTGATAAAGCAACCGGTGTTAGTAAATGTTTTGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATC CGCCATTAGTATGATGAATGGATATCAACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTA AACCTTACTGA
Protein sequence (LotjaGi1g1v0744100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQ HPMAYHAGMISPRPMSSPPGSVSPAGGNSNSGTPSGPSKNSGGQVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISA KVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 211 | 211 | 2.2E-87 | – | |
| PANTHER | 1 | 211 | 211 | 2.2E-87 | – | |
| MobiDBLite | 88 | 130 | 43 | - | – | |
| MobiDBLite | 101 | 122 | 22 | - | – | |
| Gene3D | 103 | 208 | 106 | 3.4E-28 | ||
| SUPERFAMILY | 117 | 213 | 97 | 2.01E-28 | ||
| ProSiteProfiles | 131 | 209 | 79 | 17.541 | ||
| SMART | 132 | 205 | 74 | 6.8E-25 | ||
| Pfam | 133 | 203 | 71 | 6.9E-19 | ||
| CDD | 133 | 205 | 73 | 4.33479E-48 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0744100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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