Transcript — View — Lotus Base

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LotjaGi1g1v0745300.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0745300
Transcript ID	LotjaGi1g1v0745300.1
Lotus japonicus genome version	Gifu v1.2
Description	Kinase interacting (KIP1-like) family protein; TAIR: AT1G03470.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp\|Q66GR8\|NET3A_ARATH Protein NETWORKED 3A; TrEMBL-Plants: tr\|K7MZF8\|K7MZF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0745300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:131854295..131857164) extracted from Lotus japonicus Gifu genome v1.2.

GCCTGCATCAAATACACGTGGCAGAATATGATAGGTAGCTACTTCAGAATAGAGTCAAAGAAATTCAAAATCAGAAGAAA CAATATTTATGGTGCCACTCTCCCTCTTTGTTCTTGGAGTGGAGTGGACACTCTTCACACTCACACTACTCCACCATAGT TGCAGCAGTTTCTGTTCAGAGCACAAAACGCGCACAAGACAGTGCCGTTGAGCTGATTACACTTAGAAGTCGAAGCCTTT ACCTACCCACCATCATAAAACTTCATTCAGGTACATTTCTCTCTTCCTTCTTCGTTTTTACTTTGATTTGCCAAATGGGT ATTTCAAAGTCCGAATCTTTTGTCCTCTTAACAATGAAATCAAGAAGAATTGCCTTGTGGGTTGCCCTGTATTTTGAACT ATTTTGTGTCTTTTTTGTTGTTGTTGTTGCTTTCTTCATACTTTCATTTTTTTACTAGTTTTGGATTTTCGGGATTTGAA AGTTTTCCCACGCGTAGCATTGGTAGTAGCACTGTTGAAAATTGAAATAACGGGAATGGCCTTGTTCGGTGTATCTGTGT GCTGTGTTGACTGTTGAGAATAGCGAAGAGGCAGAGTCAGAGTCAGTCTCTGAGTCACTGAGTCGGTGCATTTGTTTCTT CACGCAAATTCTGATATCTTTGGTGTTTTGAAACAATGTGATTGAGACTTTGCTACTGCTAGCCTAGCTGATAGTTATGT TTATGCAACTTTTGGTTTAGGAATTCAAGGTTATCTTTTGTGGTTTTAATATTATATGTTTTGTTCTTTTGATAAATAGG AGGAACTTGGGGATAGACAAGAAAATATTGAAGGAGAAGATGCCTGAAATAACGAAGAATCAACCCTCACATTGGTGGTT TCTTGATAGCCACAGTAGTACTAAACGATCTCCATGGCTTCAATCCACTCTATCTGGTATTATGCATGTCCTTCTTCTCT CTTCTTCATTATCAATTTGCACTTTGCAGCAATAATTTCTTTTGCTATTGCACTGCAGCACCTTTTATATTCTTTGGTTG ATTTGATTCTATAGGCTAATATGCATTTTTGATTGTGTGAAAAATGTTATTTGAGTTTGCCCTTTAATATAGACCTATAG ATTATCTTCATGAATTGCTGAAGTTTTGTCCCCCGGAAATATTACTGTTTTGAGCTAAAGAAAGAGGAACAAATGAACAA TAGTGTATAAACACAAAAGAGGTTTTGAGCTACCGTTATGATTTATCTGAGTGTTACTTTCCAAGTTCTTTTCCTTTTTC CACCTTTGGATTTAGCCGTTGGAGTGACCTTTGTTTGGTTTCTTTTTTACATGTATCTGTTATGTATACCTTTTTGTGCC ACATAATGATTTTATTATTAAAGGGGGAAAAGAGACTAGAGCATCTACTTGAGCACTAAGTTTATACACTCGCCTTCTAC AATTTACCTATATTACAAACTATTAGCAAGTAGCAACATGATCACATACCAAAAGGAATAAGTATCACTGGCTTAAGGTT AAGGTATGGTTGAAAGAAGCATAGGTTATAAAGGGAAAAGCTATAAACATCTTTGGTACAAACTATAGACTGGTGTGGAG GTTAAAGGTATAAAAAGGTTATGTGGGAATAGGATTTCGCTGAAGAGATTAATAGCCTGTTTGGATCAGTGGTGACAGAC AATACGGTGACTTAAAGTTACACATTAGCTTTTTCTCATAATTGATTGTGTGTCTTCCAAATGTAGAACCAAACACGTTG TAAACTTATGTGTGACTCTATTGGTATGTTTAATGCAGAGCTAAATGAGAAGACGAAGGCAATTTTAAAGTTAATTGAAG AAGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTACTACAAGAAGCGACCGGAACTCGTGAGCATGGTTGAAGATTTC TACCGGACACACCGCTCACTAGCTGAGCGGTATGATCAAGTGAAACCTGACACCGGAATTAGCCATCTCACGACTGGAGG ATCACCCTTTGCTTCAGCCAAATATCAAATAGAGAAGCTAATGAGTTTTGCAGATAATGGTTATGATACCTATTCTGAGG ATTGTGCTATAGATGAGTATGAGGAATCTGAAGTTGATGATCCTGATCAGGAGCAAGAGGAGAGGGCCAAATTTCACAAC TTCACAAAAGAAGAGCAAGTTTCATTTGTGGCTTCTGCCAATGAGGAAGTGATGAAGCTGAGGGATGAAATTAAGAGACT CAATGAAGAGACCAAGGTTAACAAGGATCAACTCAAGAAGAAGGATGCCATTTGTGATGAAGTGATAATGTTGAGGGAAG AAATAGAGAAACTTAGAGATGAGAATGAGGCACAGAAAGAAGAACTCAAGCAGAAGGATGTAGAGAAAATAGAGGTGATA AAACAACTGAGTTTAGCAATAGATATGCTGAAGCAGGAGAATGTAGAGATGAGAAACTTCATTGCTAAGGAGTCTACAAA GAAATGGAAGTACCCATTTGAGTTCAACAAACTTGTGGGAGCATTTTCAATGAAGTTGTTTCATGGAACTCCAAGGAATC AGCCCAGTGTTGAGCTCTCTAGGCGTGGTTTACAAAATTAGCAAATAACATAATCATGTACAAGTTTCGTATAAATCTTT ATTCAATGTTACCGCTACTCTTAGATTCCTAGTGTGTGTACTTTATTTTTTCATGTGTTCTTTAATTCTTTGTATCATCA AGTACCGGTATGCATTCAAATTGTAATAAATTTTTATTCAAATTTCGCATGACTATCCCACCTCAATTCCTTAGTCTCAT GCCTCAAATGTTTTCTCCTTGTTTTTTTGATTCTTCTTAGTTTTAGATTCTAATTGAGGAAGATGCCAAC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0745300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTGAAATAACGAAGAATCAACCCTCACATTGGTGGTTTCTTGATAGCCACAGTAGTACTAAACGATCTCCATGGCT TCAATCCACTCTATCTGAGCTAAATGAGAAGACGAAGGCAATTTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCCC AACGTGCAGAGATGTACTACAAGAAGCGACCGGAACTCGTGAGCATGGTTGAAGATTTCTACCGGACACACCGCTCACTA GCTGAGCGGTATGATCAAGTGAAACCTGACACCGGAATTAGCCATCTCACGACTGGAGGATCACCCTTTGCTTCAGCCAA ATATCAAATAGAGAAGCTAATGAGTTTTGCAGATAATGGTTATGATACCTATTCTGAGGATTGTGCTATAGATGAGTATG AGGAATCTGAAGTTGATGATCCTGATCAGGAGCAAGAGGAGAGGGCCAAATTTCACAACTTCACAAAAGAAGAGCAAGTT TCATTTGTGGCTTCTGCCAATGAGGAAGTGATGAAGCTGAGGGATGAAATTAAGAGACTCAATGAAGAGACCAAGGTTAA CAAGGATCAACTCAAGAAGAAGGATGCCATTTGTGATGAAGTGATAATGTTGAGGGAAGAAATAGAGAAACTTAGAGATG AGAATGAGGCACAGAAAGAAGAACTCAAGCAGAAGGATGTAGAGAAAATAGAGGTGATAAAACAACTGAGTTTAGCAATA GATATGCTGAAGCAGGAGAATGTAGAGATGAGAAACTTCATTGCTAAGGAGTCTACAAAGAAATGGAAGTACCCATTTGA GTTCAACAAACTTGTGGGAGCATTTTCAATGAAGTTGTTTCATGGAACTCCAAGGAATCAGCCCAGTGTTGAGCTCTCTA GGCGTGGTTTACAAAATTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0745300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPEITKNQPSHWWFLDSHSSTKRSPWLQSTLSELNEKTKAILKLIEEDADSFAQRAEMYYKKRPELVSMVEDFYRTHRSL AERYDQVKPDTGISHLTTGGSPFASAKYQIEKLMSFADNGYDTYSEDCAIDEYEESEVDDPDQEQEERAKFHNFTKEEQV SFVASANEEVMKLRDEIKRLNEETKVNKDQLKKKDAICDEVIMLREEIEKLRDENEAQKEELKQKDVEKIEVIKQLSLAI DMLKQENVEMRNFIAKESTKKWKYPFEFNKLVGAFSMKLFHGTPRNQPSVELSRRGLQN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32258 View details on PTHR32258 Search for proteins/transripts with this domain View external data on PTHR32258	3	296	294	4.0E-164	–
PANTHER	PTHR32258:SF25 View details on PTHR32258:SF25 Search for proteins/transripts with this domain View external data on PTHR32258:SF25	3	296	294	4.0E-164	–
ProSiteProfiles	PS51774 View details on PS51774 Search for proteins/transripts with this domain View external data on PS51774	10	91	82	45.43	IPR011684 Show description in modal box View details on IPR011684 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07765 View details on PF07765 Search for proteins/transripts with this domain View external data on PF07765	12	85	74	2.5E-36	IPR011684 Show description in modal box View details on IPR011684 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	163	228	66	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003779 View details of GO:0003779 AmiGO InterPro QuickGO	Molecular function	Actin binding	Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.	Subterm of View details of GO:0008092

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0745300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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