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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR32258
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.020s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0098430.1
n.a. PREDICTED: interaptin-like [Cicer arietinum] gi|502159036|ref|XP_004511372.1| chr1 919866 928608 -
1 domain prediction
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Lj1g3v0112610.1
n.a. PREDICTED: sporulation-specific protein 15-like isoform X1 [Cicer arietinum] gi|502119654|ref|XP_004496692.1| chr1 1033869 1041162 +
1 domain prediction
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Lj1g3v0114030.1
n.a. PREDICTED: sporulation-specific protein 15-like isoform X1 [Cicer arietinum] gi|502119654|ref|XP_004496692.1| chr1 1264053 1267339 -
1 domain prediction
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Lj1g3v1388080.1
n.a. Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula] gi|357491507|ref|XP_003616041.1| chr1 17131793 17135183 +
1 domain prediction
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Lj1g3v1388090.1
n.a. Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula] gi|357491507|ref|XP_003616041.1| chr1 17135504 17136088 +
1 domain prediction
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Lj1g3v4446890.1
n.a. Centromere protein [Medicago truncatula] gi|357440635|ref|XP_003590595.1| chr1 51952427 51959170 +
1 domain prediction
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Lj1g3v4764690.1
n.a. PREDICTED: gelsolin-related protein of 125 kDa-like [Cicer arietinum] gi|502112413|ref|XP_004494323.1| chr1 57413496 57415529 -
1 domain prediction
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Lj1g3v4765110.1
n.a. PREDICTED: gelsolin-related protein of 125 kDa-like [Cicer arietinum] gi|502112413|ref|XP_004494323.1| chr1 57469740 57473353 +
1 domain prediction
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Lj2g3v0621350.1
n.a. PREDICTED: centromere protein F-like isoform X1 [Cicer arietinum] gi|502173142|ref|XP_004515262.1| chr2 8566639 8571512 -
1 domain prediction
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Lj2g3v0621350.2
n.a. PREDICTED: centromere protein F-like isoform X2 [Cicer arietinum] gi|502173146|ref|XP_004515263.1| chr2 8566639 8568274 -
1 domain prediction
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Lj5g3v1003380.1
n.a. Centromere protein [Medicago truncatula] gi|357440635|ref|XP_003590595.1| chr5 15820363 15828071 +
1 domain prediction
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Lj5g3v1003390.1
n.a. Centromere protein [Medicago truncatula] gi|357440635|ref|XP_003590595.1| chr5 15822755 15829291 +
1 domain prediction
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Lj5g3v1003400.1
n.a. n.a. chr5 15825821 15829291 -
1 domain prediction
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Lj5g3v1669350.1
n.a. PREDICTED: gelsolin-related protein of 125 kDa-like [Cicer arietinum] gi|502112413|ref|XP_004494323.1| chr5 23834477 23836997 +
1 domain prediction
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Lj5g3v1669350.2
n.a. PREDICTED: gelsolin-related protein of 125 kDa-like [Cicer arietinum] gi|502112413|ref|XP_004494323.1| chr5 23834971 23836997 +
1 domain prediction
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Lj5g3v2045550.1
n.a. PREDICTED: sporulation-specific protein 15-like isoform X1 [Cicer arietinum] gi|502119654|ref|XP_004496692.1| chr5 29197526 29204819 -
1 domain prediction
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Lj6g3v0352680.1
n.a. n.a. chr6 3326288 3328536 +
1 domain prediction
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Lj6g3v0352690.1
n.a. Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula] gi|357491507|ref|XP_003616041.1| chr6 3326863 3327430 -
1 domain prediction
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Lj6g3v0352700.1
n.a. Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula] gi|357491507|ref|XP_003616041.1| chr6 3327549 3328609 -
1 domain prediction
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LotjaGi1g1v0105700.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT5G58320.2 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|F4KEW8|NET4A_ARATH Protein NETWORKED 4A; TrEMBL-Plants: tr|A0A151U0Z5|A0A151U0Z5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0105700 LjG1.1_chr1 16338620 16343885 +
1 domain prediction
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LotjaGi1g1v0105700.2
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT5G58320.2 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|F4KEW8|NET4A_ARATH Protein NETWORKED 4A; TrEMBL-Plants: tr|A0A151U0Z5|A0A151U0Z5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0105700 LjG1.1_chr1 16341259 16343480 +
1 domain prediction
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LotjaGi1g1v0305100.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT5G05180.1 myosin heavy chain, striated protein; Swiss-Prot: sp|Q84VY2|NET4B_ARATH Protein NETWORKED 4B; TrEMBL-Plants: tr|A0A072UB28|A0A072UB28_MEDTR RAB6-interacting protein, putative; Found in the gene: LotjaGi1g1v0305100 LjG1.1_chr1 74417153 74420771 +
1 domain prediction
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LotjaGi1g1v0631900.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT2G47920.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|O82259|NET3C_ARATH Protein NETWORKED 3C; TrEMBL-Plants: tr|K7MXM1|K7MXM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0631900 LjG1.1_chr1 118572191 118577225 +
1 domain prediction
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LotjaGi1g1v0716200.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G03080.1 kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|F4HZB5|NET1D_ARATH Protein NETWORKED 1D; TrEMBL-Plants: tr|K7KFA9|K7KFA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0716200 LjG1.1_chr1 128468670 128479491 -
1 domain prediction
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LotjaGi1g1v0745300.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G03470.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q66GR8|NET3A_ARATH Protein NETWORKED 3A; TrEMBL-Plants: tr|K7MZF8|K7MZF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0745300 LjG1.1_chr1 131854295 131857164 -
1 domain prediction
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LotjaGi2g1v0182300.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G48405.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q9SX73|KIP1L_ARATH Kinase-interacting family protein; TrEMBL-Plants: tr|V7C5D1|V7C5D1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0182300 LjG1.1_chr2 60485816 60491021 -
1 domain prediction
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LotjaGi2g1v0182300.2
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G48405.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q9SX73|KIP1L_ARATH Kinase-interacting family protein; TrEMBL-Plants: tr|V7C322|V7C322_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0182300 LjG1.1_chr2 60485816 60491021 -
1 domain prediction
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LotjaGi2g1v0454300.1
n.a. Kinase interacting (KIP1-like) family protein, putative; TAIR: AT3G22790.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q9LUI2|NET1A_ARATH Protein NETWORKED 1A; TrEMBL-Plants: tr|I1JAR7|I1JAR7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0454300 LjG1.1_chr2 94737382 94746087 +
1 domain prediction
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LotjaGi2g1v0454300.2
n.a. Kinase interacting (KIP1-like) family protein, putative; TAIR: AT3G22790.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q9LUI2|NET1A_ARATH Protein NETWORKED 1A; TrEMBL-Plants: tr|I1JAR7|I1JAR7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0454300 LjG1.1_chr2 94737429 94746037 +
1 domain prediction
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LotjaGi5g1v0170300.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G03080.1 kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|F4HZB5|NET1D_ARATH Protein NETWORKED 1D; TrEMBL-Plants: tr|I1JF81|I1JF81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0170300 LjG1.1_chr5 43814701 43824073 +
1 domain prediction
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LotjaGi5g1v0262200.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G03470.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q66GR8|NET3A_ARATH Protein NETWORKED 3A; TrEMBL-Plants: tr|K7MZF8|K7MZF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0262200 LjG1.1_chr5 57110643 57113483 -
1 domain prediction
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LotjaGi5g1v0262200.2
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G03470.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q66GR8|NET3A_ARATH Protein NETWORKED 3A; TrEMBL-Plants: tr|K7MZF8|K7MZF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0262200 LjG1.1_chr5 57110643 57113483 -
1 domain prediction
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LotjaGi5g1v0311400.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT3G22790.1 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|Q9LUI2|NET1A_ARATH Protein NETWORKED 1A; TrEMBL-Plants: tr|A0A0B2Q6U6|A0A0B2Q6U6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0311400 LjG1.1_chr5 62935571 62943053 -
1 domain prediction
 –