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LotjaGi1g1v0747100.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0747100
Transcript ID	LotjaGi1g1v0747100.1
Lotus japonicus genome version	Gifu v1.2
Description	GATA transcription factor, putative; TAIR: AT3G06740.1 GATA transcription factor 15; Swiss-Prot: sp\|Q8LG10\|GAT15_ARATH GATA transcription factor 15; TrEMBL-Plants: tr\|G7KWI0\|G7KWI0_MEDTR GATA type zinc finger transcription factor family protein; Found in the gene: LotjaGi1g1v0747100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:131996889..131998694) extracted from Lotus japonicus Gifu genome v1.2.

CTTGAAATTTCTATTCCCTTTGTGAATGATTGTGTGGGTAGGAGAAGCACACACGTCACATGTACACGTGGCAACATTCA AGTCTGAAATTTGTAGGGTTGCCACTATAGAGAAAGGAAACAGTAGAGGGCATTTCAGTCATTAAATCCAGGCCTAGGGT TCTTTTTGGGCATAATCAGAGTCGGTTACACTCTCTCTCTATCTATCTCTCTGTCTCACTCTGTTTCTATCCGTTTCCTT TTCTCACTCATCACAATGCTGCTGCACTGCATTGTGTAGTGTTCCTTCGTACCACTACCAGTACCGTACCACACTGCCAT TCCCCTTTTCGGTGATTCGGTTACTACCGTTTCATATTCATTCGATTCGGTGTTTTTCTTCTTCTTCATATATCAGTATC AATCACTCACTCTGTTTCTGTGTGTTGATGGGTATCATGGATCTCAAGGAGAAGGTTAGTGCTCTTGATTCTTTGAATCA ATTGGAGCTACCTGGTTCCATTAATCAGATGCTAAATGTGATTTCTGATCTTGATTTCAGGAATGGTCATCATCATCTGT GATCAAAAAGTGTTGTGCTGACTGCAAAACCACCAAAACCCCTCTCTGGAGAGGAGGACCAGCTGGGCCCAAGGTGATTC CTTGACAACACAATAGATACCCCTTTTGGATTTGCATTCCATTTCACATTTTTGCAGCTTCTGGGTTCCATTTTTTCTTC TCTGTTTTGCTTCCTCTGTTCCTCATGTAAACACTGATTTAAACCCAACTTAGTAACGTTTTTACCATATTTGTTAATTT CTACTTACTGTTGTTTCCAATTTAGTACTGTTTTTGTTTTTAATTTGTTTTGGGTATATCGATTTTTTGTTTCTATTTAA GATTTTTTTTTTGTAAATTATGATCAGGTATAGATTTCTTTAATGCTTTTGTTTTGTTTGATTAATCATTTGGTGATGTT GTTTGTTGCAGACGTTGTGCAATGCTTGTGGAATCAGGTACAGGAAGAGAAGAGCGTGTACGGTGGGAATGAACAAAGGA CAAGAAAGGAAGAGAGAGAGGGCGCAGAAAACGGTTGTTGTTGGTGGTGATGGTGATGGTGGTGGTGGGAGTGAAAGTGA AAGTGATGATTTGATGGAATCTTTGAGAATGAAGATAGTGGCGTTGGGTGAGGAGGTTTTGTTGCAACGGTCACCTTGGG AGGAGGTGGTGAAGAAACAGAGGAGGAACAAGTTGGGAGAGGAAGAACAAGCAGCTGTTTGTTTGATGGCACTTTCCTGC GGCTTTGTTTTCGCTTGAATGAATCCAAGGTTCAAGTTCAACAAACAAACCATTCCTTAATTAGCTAGATTTAAGGTAGA TAATAACCTAATTAGTAATTAGTACAAAGCCTTTTGGTGTCTTATAGGCTAACTTTTTTTTTTAAGTTATAGCATTAGCA TTGTAAAGGGATGTGCACACTTTTCTTATGTTAAAGAGGGTATTTCATCATATGATCCAATCTAGTTAGAGCCTAGAGGG AGTGAAGAGCCTTCCATAACAAAGGATTGGCTTTTCTTTTTCCATTTTCCTTTTGCTGCTTCTGTTAATAGCTGCAAATG TGTCCAGTTCAATTAGTTATTATGAATGTGAGTATTCAGATTTGTGGGTGATTTATAGTATAGTACTCTCTGTTCCTTTG ATTATTCACCATTTTTATTAGTGGTTGCTGTAGCATTTTATACTTGTGTTTTCGTTTGGATAATGTATGAGGTGGAGTAA CTATCATTTTTGGCCCATCATATAGGTTAAGGTATGTTTTTGTCAA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0747100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTATCATGGATCTCAAGGAGAAGGAATGGTCATCATCATCTGTGATCAAAAAGTGTTGTGCTGACTGCAAAACCAC CAAAACCCCTCTCTGGAGAGGAGGACCAGCTGGGCCCAAGACGTTGTGCAATGCTTGTGGAATCAGGTACAGGAAGAGAA GAGCGTGTACGGTGGGAATGAACAAAGGACAAGAAAGGAAGAGAGAGAGGGCGCAGAAAACGGTTGTTGTTGGTGGTGAT GGTGATGGTGGTGGTGGGAGTGAAAGTGAAAGTGATGATTTGATGGAATCTTTGAGAATGAAGATAGTGGCGTTGGGTGA GGAGGTTTTGTTGCAACGGTCACCTTGGGAGGAGGTGGTGAAGAAACAGAGGAGGAACAAGTTGGGAGAGGAAGAACAAG CAGCTGTTTGTTTGATGGCACTTTCCTGCGGCTTTGTTTTCGCTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0747100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGIMDLKEKEWSSSSVIKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACTVGMNKGQERKRERAQKTVVVGGD GDGGGGSESESDDLMESLRMKIVALGEEVLLQRSPWEEVVKKQRRNKLGEEEQAAVCLMALSCGFVFA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47172 View details on PTHR47172 Search for proteins/transripts with this domain View external data on PTHR47172	2	148	147	8.2E-54	–
PANTHER	PTHR47172:SF7 View details on PTHR47172:SF7 Search for proteins/transripts with this domain View external data on PTHR47172:SF7	2	148	147	8.2E-54	–
Gene3D	G3DSA:3.30.50.10 View details on G3DSA:3.30.50.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.50.10	12	74	63	6.3E-13	IPR013088 Show description in modal box View details on IPR013088 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00401 View details on SM00401 Search for proteins/transripts with this domain View external data on SM00401	15	73	59	2.6E-13	IPR000679 Show description in modal box View details on IPR000679 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57716 View details on SSF57716 Search for proteins/transripts with this domain View external data on SSF57716	18	54	37	1.38E-12	–
CDD	cd00202 View details on cd00202 Search for proteins/transripts with this domain View external data on cd00202	21	74	54	3.27853E-13	IPR000679 Show description in modal box View details on IPR000679 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00320 View details on PF00320 Search for proteins/transripts with this domain View external data on PF00320	21	54	34	2.3E-16	IPR000679 Show description in modal box View details on IPR000679 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00344 View details on PS00344 Search for proteins/transripts with this domain View external data on PS00344	21	46	26	-	IPR000679 Show description in modal box View details on IPR000679 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50114 View details on PS50114 Search for proteins/transripts with this domain View external data on PS50114	21	51	31	12.453	IPR000679 Show description in modal box View details on IPR000679 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	61	92	32	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	61	75	15	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914
GO:0043565 View details of GO:0043565 AmiGO InterPro QuickGO	Molecular function	Sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.	Subterm of View details of GO:0003677

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0747100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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