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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0747200 |
| Transcript ID | LotjaGi1g1v0747200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DnaJ; TAIR: AT1G56300.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q6P642|DNJB6_XENTR DnaJ homolog subfamily B member 6; TrEMBL-Plants: tr|I3S8T6|I3S8T6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0747200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132000544..132003037) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTAACACAAAATTTATCTATCACCTAGCTTGATTTTGATTATCTATCTCCTACCTTGTGTCCATATGAGGAGGAGT GGCAAGCGGTGTAGTTTTTCCAAGTTTGAATGTTAATTTGTGTTATCTGCCACAAAAATATCTACTCCCTCTTCTTCCCG GTGGCAACTAAAACCTCTCGAAGCTTCTTCCTTCATATCTATCTCACAATGCAAAAAGGAAGGAGAAGATATTTTTTTCT CTCTCATCTAACCTCTGCGTCCAGAAATTACCTTTTTCTCCTTCCCCATTCGTTTATATCTTCCTTTATACCCTTCCTCT CTACGTTTTTACATTCCTTAATGGCTTTCGGTTCTCCTTGTCTCCTTTGAAAACCTTCGCCGTTGGAATTTTCCGGTGCT TCTTCTGTGAATTCATGGATCGGGAAGGAGGATCCAACGGCGGCGGATCTTGCTACTACTCCGTCCTAGGGATTCGCAGA GACGCCTCCTCCTCTGATATTCGTACTGCTTACCGGAAACTCGCCATGGTAATCAGTAATCACTAATCACGCGCCGTCGT TTCAATTTCTGAGTTCTGATTTTTCGTTTTTTTTTTTTATTTTAGAAGTGGCACCCGGACAGGTGGACGCGGAACCCTGC GACGGCCGGAGAAGCGAAGCGGCGGTTTCAGGAGATTCAGGAAGCTTACTCAGTTCTCTCCGATCAGTCGAAGAGATCAA TGTACGATGCGGGGCTGTATGATCCTCTTGAGGAAGAAGACCAAGTACGGATCAATATCAATATCAATATCATCATATTC TTTTGATTTGATTTAATTTAAATTGCATGATGATGATGCAGTTGCAGAGGCAATAGACTCTGTTTTTCATGCCGTAAACA AGCCGAGGTAAAACTGTGTCGTTTTGGTGATTCGGCTGCACCGAAACGACAATAGTTTTTTTCTCGTCTTGTGTCCGGTA AAAACATGATTACCATGCCAATATTTTCTTCTTTAAAAAAAATAATAACCATCCTTTTTTCAATTGAGAAAATGCGCCTT AGGATAATACTTAATTAATTCTAATTTGGGCTTAAAAATTGTTCTAATGCAGGGATTTTGTGAATTCATGAATGAGATGA TCTCAATGATGAACAATGTCAAAGACGAGGTAATTATTGAGTTTTTTTGTTGTTGTGTGTGTGTGAAAATGGAATGATGT TGATAGTAATGTTATGGTTAGTTACTAGTTGATCAATATTTTATTGCTTAGTGCACTTACATTGAGGTGATTATGGGGTT TTTTTGTTAAACTTGGAATGATGCTAATGATGTTGTTAGTGGTCAGTCTTCTATTGCTTAGTGTGCTGATAGTATTTCTC TATTTGTCTCATGACTATTGATTATGGTATGACTTGGTTAACACAGAAAAAAAAAATTAATGTTATGGTTGGTTTGGTTT TGATGTTGTTTAGGGGGAAAGTTTGGAGGACTTGCAAAGGATGTTTGTTGAGATGGTTGGTGGAGATGGGATGAGCTTTG ACTTGGACCAGGATCAGACGGCTGGGAAGAGGGCACGCGGCAGTGGATCGAAGGGCAGCGCAGCCCAGCGTAGCACCTCT TGCCGATAGTGCGGTGTAGTGGATCCATGTTGTAATTTTAGAGTTTGGAAATTGGATTGGATTATTGATATGAAATCTCT AAACTTTTCAAACAGGTCAGCTATAGCGAGTTAGGTAATGCACCAATTGCAATTAAGACATGTTTGTTTTATTTTGTTTG CGTGGCTATAAAAATCTAAAGCGTTTTGGTAACATTGACGTGCCCAAACTATACGTTCTTGTTGTGGATTCCTAGAGCAT GTGGGAGCAAAAGCATGATACGTGTATGGCGTGAGATACTTTTGAAGTTAAAAAAGACGGTTGTGTCGGCTGAAGATAAA AGAAATTAGGAATCATCTACATTCCATATGATCAAAGCTTTCACGACTGTTTTCTTTGTCAATTTTTACGGTTTTTACAT GGTGTGATTGATAAACAAATTTATCGGTGTTCACGTGAAAAATTGTCAAGAATAAAGTAAGTCAAACGAATGTCTCTGCC TTAAAGAACATAGAATGAACATATCTATCTAAGATGTTAGAGGATATGTTCGGGGAAGCTGACTAAATCACTCGAGCAAC TGTTGATAAACGAGGAAGGGCGAAATTCCGGTGAGGGTGTGGTAAGATGATGGTCTTGATGGTGCTTTGTTGTTCGACGT GTTCGGGAGGGGTTCCTGCGATGATACTCCGATGTTCAAGTTAGAACGTGTGCTAAGAGGATGAAAAATATGATAGATTA ATGTGTATCTTATGTTTTCTAGGCCTTGACTTTTATAGAGTTTAGGATTATGCAATTCGAAGCAGTCATGAGTGTCAAGT ACATCCTCGAGCTCTATGCATTTATTTTTATTATTGGTCTATAATTACTTGGTTGGTTGGGGTTGATTGTCCCATAATTG GTCGGGTGAGAAGC
CDS sequence (LotjaGi1g1v0747200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGGGAAGGAGGATCCAACGGCGGCGGATCTTGCTACTACTCCGTCCTAGGGATTCGCAGAGACGCCTCCTCCTC TGATATTCGTACTGCTTACCGGAAACTCGCCATGAAGTGGCACCCGGACAGGTGGACGCGGAACCCTGCGACGGCCGGAG AAGCGAAGCGGCGGTTTCAGGAGATTCAGGAAGCTTACTCAGTTCTCTCCGATCAGTCGAAGAGATCAATGTACGATGCG GGGCTGTATGATCCTCTTGAGGAAGAAGACCAAGGATTTTGTGAATTCATGAATGAGATGATCTCAATGATGAACAATGT CAAAGACGAGGGGGAAAGTTTGGAGGACTTGCAAAGGATGTTTGTTGAGATGGTTGGTGGAGATGGGATGAGCTTTGACT TGGACCAGGATCAGACGGCTGGGAAGAGGGCACGCGGCAGTGGATCGAAGGGCAGCGCAGCCCAGCGTAGCACCTCTTGC CGATAG
Protein sequence (LotjaGi1g1v0747200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDREGGSNGGGSCYYSVLGIRRDASSSDIRTAYRKLAMKWHPDRWTRNPATAGEAKRRFQEIQEAYSVLSDQSKRSMYDA GLYDPLEEEDQGFCEFMNEMISMMNNVKDEGESLEDLQRMFVEMVGGDGMSFDLDQDQTAGKRARGSGSKGSAAQRSTSC R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 160 | 158 | 5.3E-88 | – | |
| PANTHER | 3 | 160 | 158 | 5.3E-88 | – | |
| Gene3D | 11 | 137 | 127 | 2.4E-27 | ||
| SMART | 12 | 74 | 63 | 1.8E-25 | ||
| CDD | 13 | 71 | 59 | 7.248E-25 | ||
| SUPERFAMILY | 13 | 89 | 77 | 4.45E-25 | ||
| ProSiteProfiles | 13 | 82 | 70 | 19.977 | ||
| Pfam | 14 | 79 | 66 | 7.3E-26 | ||
| PRINTS | 15 | 33 | 19 | 4.2E-20 | ||
| PRINTS | 33 | 48 | 16 | 4.2E-20 | ||
| PRINTS | 54 | 74 | 21 | 4.2E-20 | ||
| ProSitePatterns | 59 | 78 | 20 | - | ||
| PRINTS | 74 | 93 | 20 | 4.2E-20 | ||
| MobiDBLite | 132 | 161 | 30 | - | – | |
| MobiDBLite | 142 | 161 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0747200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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