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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0751300 |
| Transcript ID | LotjaGi1g1v0751300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine desulfurase; TAIR: AT5G26600.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q3E6S9|CNIF3_ARATH Probable L-cysteine desulfhydrase, chloroplastic; TrEMBL-Plants: tr|I1JR16|I1JR16_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0751300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132354134..132355498) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCCACTCACAACCACAACAACAACAACAACGGCTGCACCACCCACATCCCCAAAAAGCCAAAGCTCTCACCTCT ATCCTCCTCCCCCTTCATCACCCCTTCTGAGATTCAATCCGAATTCTCCCACCACGATCCCTCCGTTGCTCGAATCAACA ACGGCAGCTTCGGCTGCTGCCCCGCCTCCGTCACCGCCGCCCAACACGACTGGCAGCTCAAGTACCTCCGCCAGCCTGAC AACTTCTACTTCAACCACCTCAAACAAGGCATCCTCCGCTCCCGCACCATCATCAAAGACCTCGTCAACGCCGACCACCT CGACGAGATCTCCATCGTCGATAACGCCACCACCGCCGCCGCCATCGTCCTCCAGAACACTGCCTGGGCCTTCCGCGAGG GCACCTTCCAGCCTGGCGATGTCGTTCTCATGCTCCACTACGCCTATGGTGCTGTCAAGAAATCCATGGAGGCCTACGTC ACGCGCGCCGGCGGCACCGTCATCGAGGTCCCTCTTCCGTTCCCGGTGAAATCCTCCGATGACATCGTCCGCGAGTTCCG CAGCGCGCTGGAGAGAGGGAAGAGCGGCGGCAAGAAGGTCAGGCTCGCCGTCATCGATCACGTGACATCTATGCCCTGTG TCGTGATTCCGGTCAAGGAATTGGTCAAGATTTGCAGGGAAGAAGGGGTTGACCGGGTTTTTGTTGATGCTGCACATTCC ATTGGGTGCACCGATGTTGATATGAAAGAGATTGGTGCTGATTTCTACACCAGCAATTTGCACAAGTGGTTCTTTTGTCC ACCTTCAATTGCCTTTTTGTACAGTCGCAAGCACCCTAAAGGTGGTTCAGGTTCTGAATTACACCACCCTGTGGTGTCTC ATGAGTATGGTAATGGGTTAGCTGTGGAAAGTGCTTGGATTGGGACCAGAGACTACAGTGCCCAATTGGTGGTTCCTGCA GTTATAGACTTTGTGAACAGGTTTGAAGGAGGAATTGAAGGGATCAAGAAGAGGAACCATGAAACTGTTGTGGAGATGGG AGATATGCTGGTTAAGGCTTGGGGGACTCATGTGGGGTGTCCTCCTCACATGTGTGCAAGCATGGTCATGGTGGGTTTGC CAACTTGTTTGGGGGTTCAAAGTGATTCTGATGCTCTCAAGTTGAGGACACATTTGAGGGAGGCTTTTGGGGTTGAAGTT CCCATTTATTACCGGCCACCAAGAGATGGAGAAGTTGAGCCTGTAACTGGGTATGCAAGGATTTCTCATCAAGTCTACAA CAAAGTTGATGACTATTACAAGTTTAGGGATGCAGTTATCCAGCTTGTGGATAAGGGTTTTACTTGTGCTCTTCTTTCGG ATTGA
CDS sequence (LotjaGi1g1v0751300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCACTCACAACCACAACAACAACAACAACGGCTGCACCACCCACATCCCCAAAAAGCCAAAGCTCTCACCTCT ATCCTCCTCCCCCTTCATCACCCCTTCTGAGATTCAATCCGAATTCTCCCACCACGATCCCTCCGTTGCTCGAATCAACA ACGGCAGCTTCGGCTGCTGCCCCGCCTCCGTCACCGCCGCCCAACACGACTGGCAGCTCAAGTACCTCCGCCAGCCTGAC AACTTCTACTTCAACCACCTCAAACAAGGCATCCTCCGCTCCCGCACCATCATCAAAGACCTCGTCAACGCCGACCACCT CGACGAGATCTCCATCGTCGATAACGCCACCACCGCCGCCGCCATCGTCCTCCAGAACACTGCCTGGGCCTTCCGCGAGG GCACCTTCCAGCCTGGCGATGTCGTTCTCATGCTCCACTACGCCTATGGTGCTGTCAAGAAATCCATGGAGGCCTACGTC ACGCGCGCCGGCGGCACCGTCATCGAGGTCCCTCTTCCGTTCCCGGTGAAATCCTCCGATGACATCGTCCGCGAGTTCCG CAGCGCGCTGGAGAGAGGGAAGAGCGGCGGCAAGAAGGTCAGGCTCGCCGTCATCGATCACGTGACATCTATGCCCTGTG TCGTGATTCCGGTCAAGGAATTGGTCAAGATTTGCAGGGAAGAAGGGGTTGACCGGGTTTTTGTTGATGCTGCACATTCC ATTGGGTGCACCGATGTTGATATGAAAGAGATTGGTGCTGATTTCTACACCAGCAATTTGCACAAGTGGTTCTTTTGTCC ACCTTCAATTGCCTTTTTGTACAGTCGCAAGCACCCTAAAGGTGGTTCAGGTTCTGAATTACACCACCCTGTGGTGTCTC ATGAGTATGGTAATGGGTTAGCTGTGGAAAGTGCTTGGATTGGGACCAGAGACTACAGTGCCCAATTGGTGGTTCCTGCA GTTATAGACTTTGTGAACAGGTTTGAAGGAGGAATTGAAGGGATCAAGAAGAGGAACCATGAAACTGTTGTGGAGATGGG AGATATGCTGGTTAAGGCTTGGGGGACTCATGTGGGGTGTCCTCCTCACATGTGTGCAAGCATGGTCATGGTGGGTTTGC CAACTTGTTTGGGGGTTCAAAGTGATTCTGATGCTCTCAAGTTGAGGACACATTTGAGGGAGGCTTTTGGGGTTGAAGTT CCCATTTATTACCGGCCACCAAGAGATGGAGAAGTTGAGCCTGTAACTGGGTATGCAAGGATTTCTCATCAAGTCTACAA CAAAGTTGATGACTATTACAAGTTTAGGGATGCAGTTATCCAGCTTGTGGATAAGGGTTTTACTTGTGCTCTTCTTTCGG ATTGA
Protein sequence (LotjaGi1g1v0751300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTHNHNNNNNGCTTHIPKKPKLSPLSSSPFITPSEIQSEFSHHDPSVARINNGSFGCCPASVTAAQHDWQLKYLRQPD NFYFNHLKQGILRSRTIIKDLVNADHLDEISIVDNATTAAAIVLQNTAWAFREGTFQPGDVVLMLHYAYGAVKKSMEAYV TRAGGTVIEVPLPFPVKSSDDIVREFRSALERGKSGGKKVRLAVIDHVTSMPCVVIPVKELVKICREEGVDRVFVDAAHS IGCTDVDMKEIGADFYTSNLHKWFFCPPSIAFLYSRKHPKGGSGSELHHPVVSHEYGNGLAVESAWIGTRDYSAQLVVPA VIDFVNRFEGGIEGIKKRNHETVVEMGDMLVKAWGTHVGCPPHMCASMVMVGLPTCLGVQSDSDALKLRTHLREAFGVEV PIYYRPPRDGEVEPVTGYARISHQVYNKVDDYYKFRDAVIQLVDKGFTCALLSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 9 | 453 | 445 | 9.2E-248 | – | |
| PANTHER | 9 | 453 | 445 | 9.2E-248 | – | |
| SUPERFAMILY | 42 | 444 | 403 | 2.56E-59 | ||
| Gene3D | 65 | 308 | 244 | 1.3E-47 | ||
| Pfam | 89 | 358 | 270 | 1.8E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi1g1v0751300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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