Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0752200 |
| Transcript ID | LotjaGi1g1v0752200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin acetylesterase; TAIR: AT3G05910.1 Pectinacetylesterase family protein; Swiss-Prot: sp|Q9SFF6|PAE12_ARATH Pectin acetylesterase 12; TrEMBL-Plants: tr|I3S5J3|I3S5J3_LOTJA Pectin acetylesterase; Found in the gene: LotjaGi1g1v0752200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132470781..132475959) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTTATAGTTATACCATCATTTAATTCCGTACTGACAGTTAGATATTTAATCGTCATAACTAAAGTTTTCACTTAAT GCAGCTTCATTAAATAATGTCGGTACTCATCAAAAGAAAAATGTAGAGGCAGCCAGAGAGTGTCCGTGACACGAACGGTG TACAGTACACAACACGAGCAAGCTGCTTCTCTTGCCTCTTGAGCTTTTCTTTCTTAGATTCCAAATGTGACTCTGACACT AATAAACAAACACTGTACAGTGTATCAATGTTAGATCTATCACCGCTTCTTCATCTCTTCTCTGATGTCAATTCAGCTCT AATAAATTGAAGTACAGTGTTAGCTAATTGAAGCACAGTGTTTATTGTACGTACTGATGGCGAGGTTTTTCTGGGTTGGC ATTGCAATAACACTTGTTTTAGTTAGCAACTGTGTTGATGGGTCTGAGGGTTACCTACATCACTTCAACGAAACGGAGCT GTCTTTGTTGGAAGCACATGAAGCAGCAGCATCAGCCTTATCATTCTCCGGGAGGAATAATCCTCTGCTTGTAGGCCTCA CCCTTATTCAAAATGCAGCTGCTAAAGGAGCAGGTTTAATTTCCACCATCTTCTTCTATTTTTTCATTATATGACCAAAA TGCTTATAAAGAATAATTGTTCACATTTAATGCTGTTACTTAACCTGCACTTTATCTAATTGACCTTGGTTTTTCTTTGT TTAATAAATTAATTTCTTACAAGTTTTATTCTGAAATTTTTCTTGCATTGAAGGGTTGCATGTTTTTATTCTCGGTCCTA ATATCGTTTTAATTTTTTGGTTAATTTGACCTATTTGTCAACCCCTTCTATTTTGTTACCCTTTTCTCCTATTATTACCA AATCCATGATACTGTCTATCTCCTATGGAGGTTTCTACATAAGGAAGCAGCACCATATTTATGGAAAGTTCTGCATAGAT TCACAGTTTTTACTTTTTAATAATAATTACAAACTCTTTGCCTTCAATTTTGTTAAATTTATTTAACCAACAAAGTGTTA GTACAGTGGTAGGCAAGCTAGGTTCCCCGTAGAGGTGATGACACAAGTTTGAACCCTGGGACAGACATATGATAGGAGTG ACAGTCACAATTTCCGAACGGCGGGTTAACAGCGGTTAAAGACCCAATTTTTTATTTTTATTTTTTTATGCTGCTCTGGC AGTCTGCTTGGATGGAACATTGCCTGGTTACCATTTGCATCGTGGATATGGATCAGGAGCAAATAGTTGGCTTGTTAACT TAGAGGTATGACTTTATCTTTCTAATTGTGCTTCTTTTTATTTTCTGTCACACTCACCAGATAAACCAAGTTATGCAATT TAGAAGAATGTTGTATTAAGGCTGTTGAATCTTTGTTTTGGCACTTAAAAGCATTTCTTATTAACCTGTTGTTTAAATCC CATTTTATTTTTGTACATTCCAAGCTATGACTGAAAATACTTAGAAATTAATGTCGTATCTCCAATTCTTCTTTAAAGCA TTATGTTTACCAAGCTACTTCCCTTCTTTGCTGTTACAAATTGTGGTGATATTCAATTGAAAATACTGTGACAGGGAGGT GGATGGTGCAATAACATTAGAACGTGTGTTTATCGTAAGAAAACCCGGCGTGGATCGTCGGCCTTCATGGAAAAGGAGAT ACCCTTTACAGGAATACTGAGTAACAAAGCTGAAGAAAATCCAGGTTTCCATTCAATTGAATTATGTGGAACACTCAAAT TCTGCTCCTGCATTTTTCCCCTTGCTATTGGCACTGGAAGCTTAGCTCATGTTGTTGTTCTTCATGCTTGCAGATTTTTT CAATTGGAACAGAGTAAAGCTTCGTTATTGTGATGGCGCCTCATTTGCTGGGGATGCTGCACACCCGGTAGAGTTTGATA CCTTGGTGTTTTTGAAATGATATTTAGTTTTACTTTAGTTTCAATAAGAAAAAGTTGTTGCCTTCAAATTTTTTTACTAT GTGTGAAATAGCATTTGAGTGACATGTCATGGTAGAAATCATGATTTTCTGTATGCAGTCAAAGATTATTTCAAGAGGTG GTGCATGTGATTTACTTTACTTTGTAGTGTAACACTCTTTGCACCTTTAGTCAACAAAATTGAATCCATCATGAGTGCTA GGAAAGAGGTTAAAGTGCACATAGGACTAAATTGCAGCACATAGATTTTATAGTTCAAGGGCGTGTTTGGTTGAATTGGT GTAGAGTGGGAAAGTGGAAAATAGATAACAGGTTGAAATGAAGTACATTCACGTTTTATAAATTTGTTGTACTGAGCAAA TGTAATGTGGTTTCAGTTCCAAAACTTCTACCTCCATACTTACCACAAATCCATGCAAACCACCCTTACAAGATGGGTTT GATTCACTTTTTTCTTTCAATGCCTCATTCTTTGGAATTTTTTTTATGTTTATTGGGTTCTTTGACATTGATGTGAATAT GGACAGTAGAAATTTATTTGATCAAGACCTTATTTTCCTTTGGGTTAACTTTATACTATCTGCCTTACTGAGCATTGCCA ACTTACTTCTCATAGTGTTCTTAATTTTCATATCCTCCATTTGGATTTGCTGTGGATATGTATCTTTTTTCATATAAAAT TTAGCTTTAGAAACTTCAATTGTGTGGCCGAAAACTGTATGATTGGGGCATCAGAAAGAGAAAATAACACTGAGATACAG TACACTAATTTACTTGAAATTCATATGATGAAATGAGTGTTTACTTGCATATATTGTCTGTTGGGATAGACTGCACAACT GCAATTCAGAGGTCAACGTATTTGGGCAGCTGCGATGGAAGACTTGATGTCAAAGGGAATGCGTTTTGCCAATCAGGTTA TAGACTCACATGTTCATAGACATATATAATGCTATATTCATAATCTTGGCTCTGATATTGTATACGATTAATTTTGCTTC AGGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTAGCTACTATTATACACTGTGATGAGTTCCGAGGTTACTTTCCAAGG ACTGCTAAAGTGAAGTGTCTAAGTGATGCTGGGTTGTTTCTTGATGCGTAAGTTGGCAAACTGCAGAATTTTATGTTTTC AATGCCATTTCCACCACCATTATCACCAAATTGCATTCTTAAATCAGTTCTTAATTGCTGTTCTCTTTGGAATTACAGGA TTGATGTATCTGGTGGGCGTTCTCTCAGGAACTTATACAGTGGTGTCGTAGGATTGCAGGTATGGCATTGGTTAGAAAGC TGCCAAACCAAACTACTATAGTATGAAAGCGAAATTCATTAAGAAAGCACCTCCATGTTTCATGGTCACCTGGACAGCTG ACTTATAGGATGTGGTTCGAAACTTCGACAACCTCAGAACCAAAAGCAAATATAAAATGCAATGCCAATTTAACACAAGC ATGATCTTGGTCAAATCTGTTTTGGTCAATTACAAGGGTTTTCACTGAACTTGAGTAGTTAACTTGAATTTTAAATTTTT AATAGCCTTTCTTTAATGAAAACATATGTACTGTGTAGCCCATACTAAGTAGTTTATATGCTTTGAAAACTTGGTTATTG GAGGCATGCTGATAAATATTTGTTTAATCATTGCAGAGAGTGCAGAAGAATCTACCACAAATTTGTACTAATCACCTTGA TCCCACCTCGGTAATTGCTGATTTGATTTCTATTGTGCCAAAAATTTAGGAATATCAATTTCATTTGACAGAATATGCAG AAAATAGAACTATCGTTATGGCTGGCTCTATGTTTAACTTTTTGGTTTATCACTTACTTTCAGTGCTTCTTCCCTCAAAA CTTGATTTCCAGTGTTAGAACCCCGCTATTTATTCTTAATGCTGCTTATGATTCATGGCAGGTAAATTATCTTACTTTAT CAGTAGATAGTTTTAACTAGTGATATTCATATTATATGATCTATGGTAGCAACGATCATTGGATTAATTATTGGCAGATT AGACTAATCATATACATTTTCTTGCTTGTCATCAGATTCAATCTAGCTTAGCTCCTCCAACAGCAGATCCTCATGGCTAT TGGCATGATTGTAGATTAAACCATGCTAAATGTAGTAGATCACAAGTCCAATTTCTGCAAGGTGATATGAGTTATGAGAA ATATCATTCAATAAAAGTGGAGAGAAATCTTCAATAAATTATTCGGTTGATTAATACATTTCACTATCTCTTCATTGCAG GATTCAGGAATCGCATGCTGAATGTTATTAAAGACTTCTCGAGATCAAACCGGAATGGATTGTTTATAAATTCATGTTTT GCTCACTGCCAATCCGAAAGACAAGACACATGGTTTTCTGACAATTCTCCTGTTATAGGGAACAAGGTAAGCTTGGATTT CACTAATGTTATTTAGTTGACAATGAGACATGCTGGTATGGACTTGTTTTCCAAAAGAAATTTGTTGTCAGTCCATAGTT ATCAAACTCTTAACAATCTTAAATCTTAAATGTAATTGCTTGCTAACATAATATTTTTGATTTGGAGATATTAATGTTAC ATTGACAATGTGTAGGCAATTGCGGTGGCTGTTGGAGACTGGTATTTTGACCGAGCAGGTGTTAAGGCGATTGATTGTCC TTATCCTTGTGATAAGACATGCCACAATCTGATTTTTGCATAAGCCAAAATTCGTCCTTCATTTCTACTGTTCCAAGTTC TCATCAATGGAGGATTATGTTTATACGAAACAATAAAAAGGTTGCTGAAAAATGCAAATTTAATCAGCCAACCAATAATT TGATTCAGTGGTTAGTGATAGTAACTGTAATGTTTAGACGCTTTGACAAATCTTTCTTATTCCTTAATAGTTTATGCTTT GAACCGTGTAGTGCTAGAATGCCATCATTTACTAGGATGCATTTATTTGTTTTGAACTGTCTCTTGTTTTCCCTGTTACA ATGTTATATCATTAGTTCATTATCTAGTGATTGAATCTCATACCAAAAATAAATAGTGAGTCGTGTAATTCTAATGTGAT AGGTTTCCAATCACTAAAAGTATCCTAATTCACGCAGCATACATATCCTTGGTCAAAGCAAGAGTCAAATTCTCTTAAGT CATTTCCATTGCACCCTAACTCCCTCACACGTCCTTGTCCCTTTCCGCATTAAATTGTT
CDS sequence (LotjaGi1g1v0752200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGTTTTTCTGGGTTGGCATTGCAATAACACTTGTTTTAGTTAGCAACTGTGTTGATGGGTCTGAGGGTTACCT ACATCACTTCAACGAAACGGAGCTGTCTTTGTTGGAAGCACATGAAGCAGCAGCATCAGCCTTATCATTCTCCGGGAGGA ATAATCCTCTGCTTGTAGGCCTCACCCTTATTCAAAATGCAGCTGCTAAAGGAGCAGTCTGCTTGGATGGAACATTGCCT GGTTACCATTTGCATCGTGGATATGGATCAGGAGCAAATAGTTGGCTTGTTAACTTAGAGGGAGGTGGATGGTGCAATAA CATTAGAACGTGTGTTTATCGTAAGAAAACCCGGCGTGGATCGTCGGCCTTCATGGAAAAGGAGATACCCTTTACAGGAA TACTGAGTAACAAAGCTGAAGAAAATCCAGATTTTTTCAATTGGAACAGAGTAAAGCTTCGTTATTGTGATGGCGCCTCA TTTGCTGGGGATGCTGCACACCCGACTGCACAACTGCAATTCAGAGGTCAACGTATTTGGGCAGCTGCGATGGAAGACTT GATGTCAAAGGGAATGCGTTTTGCCAATCAGGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTAGCTACTATTATACACT GTGATGAGTTCCGAGGTTACTTTCCAAGGACTGCTAAAGTGAAGTGTCTAAGTGATGCTGGGTTGTTTCTTGATGCGATT GATGTATCTGGTGGGCGTTCTCTCAGGAACTTATACAGTGGTGTCGTAGGATTGCAGAGAGTGCAGAAGAATCTACCACA AATTTGTACTAATCACCTTGATCCCACCTCGTGCTTCTTCCCTCAAAACTTGATTTCCAGTGTTAGAACCCCGCTATTTA TTCTTAATGCTGCTTATGATTCATGGCAGATTCAATCTAGCTTAGCTCCTCCAACAGCAGATCCTCATGGCTATTGGCAT GATTGTAGATTAAACCATGCTAAATGTAGTAGATCACAAGTCCAATTTCTGCAAGGATTCAGGAATCGCATGCTGAATGT TATTAAAGACTTCTCGAGATCAAACCGGAATGGATTGTTTATAAATTCATGTTTTGCTCACTGCCAATCCGAAAGACAAG ACACATGGTTTTCTGACAATTCTCCTGTTATAGGGAACAAGGCAATTGCGGTGGCTGTTGGAGACTGGTATTTTGACCGA GCAGGTGTTAAGGCGATTGATTGTCCTTATCCTTGTGATAAGACATGCCACAATCTGATTTTTGCATAA
Protein sequence (LotjaGi1g1v0752200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARFFWVGIAITLVLVSNCVDGSEGYLHHFNETELSLLEAHEAAASALSFSGRNNPLLVGLTLIQNAAAKGAVCLDGTLP GYHLHRGYGSGANSWLVNLEGGGWCNNIRTCVYRKKTRRGSSAFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGAS FAGDAAHPTAQLQFRGQRIWAAAMEDLMSKGMRFANQALLSGCSAGGLATIIHCDEFRGYFPRTAKVKCLSDAGLFLDAI DVSGGRSLRNLYSGVVGLQRVQKNLPQICTNHLDPTSCFFPQNLISSVRTPLFILNAAYDSWQIQSSLAPPTADPHGYWH DCRLNHAKCSRSQVQFLQGFRNRMLNVIKDFSRSNRNGLFINSCFAHCQSERQDTWFSDNSPVIGNKAIAVAVGDWYFDR AGVKAIDCPYPCDKTCHNLIFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 22 | 7 | - | – | |
| Phobius | 23 | 422 | 400 | - | – | |
| PANTHER | 26 | 421 | 396 | 1.5E-230 | – | |
| PANTHER | 26 | 421 | 396 | 1.5E-230 | ||
| Pfam | 55 | 401 | 347 | 7.1E-163 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi1g1v0752200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…