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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0754000 |
| Transcript ID | LotjaGi1g1v0754000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT2G46970.1 phytochrome interacting factor 3-like 1; Swiss-Prot: sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1; TrEMBL-Plants: tr|A0A151TXB8|A0A151TXB8_CAJCA Transcription factor PIF3; Found in the gene: LotjaGi1g1v0754000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132701553..132704251) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATCACATGGACTTTTGGCACCATATGAACATGAACCAAGACCATCATGGTTTATATATTATCACCTGTTTCCACAA TTCATCACATCACATCTTCTTCTGATTCTGCTTGCTCAGAGAGCTATATAGCAAATTGTGATCAGAAATTAACATACAGA AACAAAATACACCAAAGACACATATAGCAGAGAAACTCAAATTGTTTAGCTTAATTTCATTTACTTCAATGACTGAAAAG ATGCTTGACTCTATGTAAGTATTGTTTATAAACATTTATTGCAATTTTTTTGATCTTTTTTCATATTAATATGCTTCCTT CCTTTAGTTTCTAACCAAAATGAGTCATGACTCATTTCATTTCAGTTATGGCAATGATTTCTTTGAGCTGGTGTGGGAAA ATGGCCAACTAGGTTCATCAAATAGAACAACACCAAAGACTCCTAATAATTTGTGCATAGGGTTTTCACATCAAAGCAAT ATTGGCCAAGGTTCCTCTCAGATTCATGATTTGCAATTACAATCACCACAAAGCAAGAGTTCTTGTAAGAAGCCTATTGA TGAATTTCGGAACTTAAGACCTATGAAAGATTGCACATACTCCTCACAACAGTGCTTACCTTATTCTGCTCCACTCAAGA AACCAAGAATGGATTCAAGCCTAACACCACTAACAAACTCACAGAAACAGAATTTTTCCAACTTTTTGATACCTGAAGTG TTTCTCAAATCCACTAATCATCACAGAAAGAGTGCAACACAGACAACAAGAATTGCACTTTCACCAAGAGTGAAGGAGAT TGAACATAGCAAAGTTGAGAAATCTACTAGTAGCAAAGGTGCTACTGACAATTCCACAGTGATTGAATCAGCTAAAGGAT CACATGTTCTCACAGGATTTCGAGGACAAAGATTTTTAACTACTAACAAATGGAACACCAAATCCATTGTTGAAGGAAGT GCTGCTGCACCACCACCACTTGATGAACATTCTGAAGCTGTTAGCCATAGTAACAGTTCCAATGGAACTACTCAATATGA AGCACTTGCAAAGGGAAAAGCTAAAAATGATAACTTGTGCAATGAACGAGCAATAGCTTCTTCTTCTGTATGTTCGATTG AAGCCTCATACAACCCAAACTTTGGTAGCAGGAAACATGATCAGGACAGTGATGATTCTGCATTTTTAAGTGATGTAAGT GGAAACTGGAAACAAACAGGCTATGTTTTAAGCTTCTTCTGTCATTAGTAGTAAGTAGCTACCTTCATTCTCAATAACCT GGATTTTTTTTATGCAGGATGATGAGGAAACAGAAGATTATACAGTGAAGGAAGTTCAAGCTCGAGACGGTACCAGAATC AAGAGAAGAAGAAGCGCAGAGATTCATAATTTATCTGAAAGGGTGAGCAAACATATATATAAATAAATATGTACATTTAA AACGAAGAACATCTTGAATGTAACAACTATGTCAATGTTAATTTCATCTAACTGACATAGTTGTTGATGTTTGCAGAAGC GAAGAGATAAAATCAACAAGAAGATACGGACACTGAAGGAGCTCATACCCAACTGCAACAAGGTGTGTGAGTTTGAGGCT GATTGAATTCATTGTGTTTTTATGATAAAAAAAAATAAGACCTTTTTGCACTTGTTTTAATTCTAAACGTTTTGCTTTGT ATGTCTCTTAGATTGATAAAGCTTCAATGCTTGACGATGCCATTGACTATCTAAAGACCCTCAAACATCAGTTACAGGTA AAATTTGTGTTCTTTTCTATTATTTTTGGTTTGAATAACAGCAGCATACATTTTCATTCATTAGAGGACATATTTATACA AAATACATCGATTGAAGACTTAAACAAGCAACGTATCTAATGATGTTCTTCTATTCATCATTACATTGCATCACAAAGAC TTCCTAATAGACTTAACTTACATAACCTAAGGAAAATACTCATTGTTAGTTATCTATCAAATTGCTTATTGCCTATCAAA AAAAAAAATCAAATTGCTTGGTTTTTAAGATATGTATTAAGCATAGTATTTTATATGAACTGCAGATTATGTCAATGGGG AGAGGGCTATGTATGCCACTTATGATGCCACCACATTTGCCTCAGTTAATGGGAGTTGGAATGGGAGGAATCCCTTGCAA CCCACCACAGTTTTCAATTCCATCACTTCCTGGTTTCACAGACAACAGACTTCAGATGTTTGGTTTCTCCAACCAACAAA TACCAAACATGTCAATTCCTAATACACCTTTCTTCCCTATCATTGGAAACTCTTCTTCTACACAACAACCATTTATAGCG GCGGCGGAACCATTGCCTTATTCTGCACCCTTAACAACTTTGGAGGCCTCAAACCCCAAGAACTGAAATTTTTATTCAAA TCAATTGCTATGAAAGAAACTTAGAACTAAGAAAGATAGTCCTATTATTTGATTGTAGAATATCAGCAGCAGATTCTGAC AGTTTGTAGTTTGATGGTTTGATTTTTATGTAGTGATGAAAAAGATCAATAGACAAAAACGTGAAATAAATTAATAGTAT CGTGGATTCTTTATATCTTATGAGTTTATGCTTCACTTCTAGACCATGATAATATGACATGAGCCTTATGTTCGTGATCT CAAACTCAAGTGACATTACCTTTCGAAATTCTTCAAACAAACTTGGATTGTTGCTGGTG
CDS sequence (LotjaGi1g1v0754000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGAAAAGATGCTTGACTCTATTTATGGCAATGATTTCTTTGAGCTGGTGTGGGAAAATGGCCAACTAGGTTCATC AAATAGAACAACACCAAAGACTCCTAATAATTTGTGCATAGGGTTTTCACATCAAAGCAATATTGGCCAAGGTTCCTCTC AGATTCATGATTTGCAATTACAATCACCACAAAGCAAGAGTTCTTGTAAGAAGCCTATTGATGAATTTCGGAACTTAAGA CCTATGAAAGATTGCACATACTCCTCACAACAGTGCTTACCTTATTCTGCTCCACTCAAGAAACCAAGAATGGATTCAAG CCTAACACCACTAACAAACTCACAGAAACAGAATTTTTCCAACTTTTTGATACCTGAAGTGTTTCTCAAATCCACTAATC ATCACAGAAAGAGTGCAACACAGACAACAAGAATTGCACTTTCACCAAGAGTGAAGGAGATTGAACATAGCAAAGTTGAG AAATCTACTAGTAGCAAAGGTGCTACTGACAATTCCACAGTGATTGAATCAGCTAAAGGATCACATGTTCTCACAGGATT TCGAGGACAAAGATTTTTAACTACTAACAAATGGAACACCAAATCCATTGTTGAAGGAAGTGCTGCTGCACCACCACCAC TTGATGAACATTCTGAAGCTGTTAGCCATAGTAACAGTTCCAATGGAACTACTCAATATGAAGCACTTGCAAAGGGAAAA GCTAAAAATGATAACTTGTGCAATGAACGAGCAATAGCTTCTTCTTCTGTATGTTCGATTGAAGCCTCATACAACCCAAA CTTTGGTAGCAGGAAACATGATCAGGACAGTGATGATTCTGCATTTTTAAGTGATGATGATGAGGAAACAGAAGATTATA CAGTGAAGGAAGTTCAAGCTCGAGACGGTACCAGAATCAAGAGAAGAAGAAGCGCAGAGATTCATAATTTATCTGAAAGG AAGCGAAGAGATAAAATCAACAAGAAGATACGGACACTGAAGGAGCTCATACCCAACTGCAACAAGATTGATAAAGCTTC AATGCTTGACGATGCCATTGACTATCTAAAGACCCTCAAACATCAGTTACAGATTATGTCAATGGGGAGAGGGCTATGTA TGCCACTTATGATGCCACCACATTTGCCTCAGTTAATGGGAGTTGGAATGGGAGGAATCCCTTGCAACCCACCACAGTTT TCAATTCCATCACTTCCTGGTTTCACAGACAACAGACTTCAGATGTTTGGTTTCTCCAACCAACAAATACCAAACATGTC AATTCCTAATACACCTTTCTTCCCTATCATTGGAAACTCTTCTTCTACACAACAACCATTTATAGCGGCGGCGGAACCAT TGCCTTATTCTGCACCCTTAACAACTTTGGAGGCCTCAAACCCCAAGAACTGA
Protein sequence (LotjaGi1g1v0754000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEKMLDSIYGNDFFELVWENGQLGSSNRTTPKTPNNLCIGFSHQSNIGQGSSQIHDLQLQSPQSKSSCKKPIDEFRNLR PMKDCTYSSQQCLPYSAPLKKPRMDSSLTPLTNSQKQNFSNFLIPEVFLKSTNHHRKSATQTTRIALSPRVKEIEHSKVE KSTSSKGATDNSTVIESAKGSHVLTGFRGQRFLTTNKWNTKSIVEGSAAAPPPLDEHSEAVSHSNSSNGTTQYEALAKGK AKNDNLCNERAIASSSVCSIEASYNPNFGSRKHDQDSDDSAFLSDDDEETEDYTVKEVQARDGTRIKRRRSAEIHNLSER KRRDKINKKIRTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIMSMGRGLCMPLMMPPHLPQLMGVGMGGIPCNPPQF SIPSLPGFTDNRLQMFGFSNQQIPNMSIPNTPFFPIIGNSSSTQQPFIAAAEPLPYSAPLTTLEASNPKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 86 | 450 | 365 | 3.5E-119 | – | |
| PANTHER | 86 | 450 | 365 | 3.5E-119 | – | |
| MobiDBLite | 151 | 174 | 24 | - | – | |
| MobiDBLite | 206 | 231 | 26 | - | – | |
| MobiDBLite | 267 | 292 | 26 | - | – | |
| Gene3D | 302 | 361 | 60 | 2.9E-18 | ||
| CDD | 307 | 364 | 58 | 1.1898E-17 | ||
| SUPERFAMILY | 309 | 371 | 63 | 1.96E-19 | ||
| ProSiteProfiles | 310 | 359 | 50 | 17.631 | ||
| Pfam | 315 | 359 | 45 | 5.4E-13 | ||
| SMART | 316 | 365 | 50 | 6.3E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0754000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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