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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0754400 |
| Transcript ID | LotjaGi1g1v0754400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor, putative; TAIR: AT1G62300.1 WRKY family transcription factor; Swiss-Prot: sp|Q9XEC3|WRK42_ARATH WRKY transcription factor 42; TrEMBL-Plants: tr|I1NBI8|I1NBI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132748685..132752791) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCATGTGTTGTGGGACCCCACCCCATAGTTCAAGGTCCAAGAGGGAAGGTGTGCGCTGCGACTACATTTAAAAACCA CCTTGGCGTTGAAAAGCCTCAATATTGATAGTAATTGGCAACACACACACGAACTACCAGCCACTTCTCGATTCATTCAT TTCATTGCAACACACCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAACTATGGAGGAGAACCGAC ACCATCAACGCCGTGAATTCTCCTTCTTAAGCTCAGGCGGCGACTTCCACCGCCACAATCTCAATCTTGATTGTTCCACA AACAACACAGATCCTCCTACTCCTCCTCCCTTCAAAGAAATGGATTTCTTCAAAATTCATCCTCATAATAGCAACAAAGA TGCTGCTGCTGCTGCTGATGATGATCACCACCAACAACAACAGCAACAGCAGTATGATCAAGATCAACGTGACACTCATC TCACCATCACCAAACATGAATCACCATCTCTCGTCACTCATCACCCCGTAAACGTAAGATTTCAGATATATATATATATA TATAATATAGATAGTGATTTGTGTGATCAATCGAATTTTGAATAAATCCATTTTAATTAATATATGCAGACTGGACTGAA TTTAACATGCTCAAGTTCTGCAAATAATGGTGAAGAAAATACTGAAACTGAGGTTTGTATATATCCATCATAGCTAGCTA GGGCCATAAATACCCATAATATTAAGTTATATAAATATTGTTTGGAATTTATTTTTTTATTAATCTTGTCAGCTGAGTAG AGTTGAAAGTGAATTGCGGAGAGTACAAGAAGAGAATCACAAGTTGAGAATTGTGTTGGACCAGATCACCAAAAGCTATA ACCAACTACAAGCTCACCTGCACTTTATCGTTTTGCACAAACAAAACCCTCATCATCAGGTATCTGTCTAGTAGTATATA ACTAAATATATTTCCACCACATGATCTCTATCCGTTTTCATCTTAACTCACGAGCTCAATTTAAACTAAGGGTACTAGTT TTCAATTTTCATGTCGATCAGGTAAACTTTATTTAAATTTCTCCTAGCTAGCAGATAGATATATAACGAAAGCATGATAT GTATGTCCGTGTTTGTGTGCCCTTTTCTCCATATTTCTTAGTCAGCAAACAAACAAGGTAGCGTGCAGAGCATATATAAA TTATAAACCATGGCTCTCTAGTCTCTCTACCTAGCTTCCTTTAATTTCCTGTCTTCTTCTAAACTTAGCTATATATATAA AAATATAAATTACATTACCTAGTTTTTATTATTTTGGGTTTGTTTGCGCAAGAAGTCAATAATTAATTATTGTATTAGAT TATTTTTAAGAAGTATTATTGTTTGGTTCTTTACAACATGATATACGTTTCTATTTTATTTTCTTAATTAATTAAAAATT TAACACAGAATAATCTCTTTTTTCTTATAAAACCACCGCCTTCACACTTCATAAAACAATGTCATTTTTTATACACTTAA ACAATATCCAATTTCTTTGAATGCAATTGGCTTATTAAAAAATATCATATTTGACATTACCCACCCTCTTTTTTCTCACT ATTTCTCTTCATATATATTATTCACTATAAATATTATCATAATTATTAGGTTTCGGCGATCTATGTCCCCGTAAGATAAC TCAAGTGATAGGAGCTGAGAAACATATGAGTTAGGTAGGAGGTCATGAATCGATTTATGACGGGTGCAATTTATCTTTTC GATGTACTAAAAAAAAAAAGTTTTAATTTGTGCTGTCTATAAAGCAATATTTTAAGAAACAATTAATAGTAAAACAATTA CTACTACCACAGAATTGGCTTTATATAACTCACATATGAATGAAAGTCTTGTCTCTCTTATTTATGTGTAATCTAGCTAA CAAATAATGCAAATATGCGGCTGTGGTCTTAAAAAAACAAATTAAAGGGGGGAATTAATAAGATAAAACTGTCAAAACCT ATATATGCTTTTATATACCAACAATTAAAATCCATAATCCATGGCACTTAACAGATAATTGTGGAGCAGAATATCGAAAT AAATGGGATGATAGCGGGACAAAAATATGTGGACCCAGGACCATGCACAAAATTAGATGTCAAAATTGATGCATCAATTA ATTCTGATGATAAGAGTGATCGCGAGGCATCAATTTCTCCTTCAAACAATAAGGAAGTGATGTCAAACAAACGCGACCAT CATCATTTGACTACTAAACCAGCTGATCTTGGAAAGCAGCAAGCTTGTCCTGGTCCTACTGGAGATGTGCTTGACCGGTC ATCCTCACAGAGTTTGGGCTCACCCAAGTTAGAAGAATCCAAAACTGCTGAACACGTTGCCGGTGACCAGTTTCAGCTCA GAAAAGCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCCATGGTACGTAATGCATTTAATTTGAAATATGATTAAAAG AATGGGCATGTGGAAATTATTTAAGTAATGCAACATTAATATTCTATATATGTTGGAAATTTTCCTTTCAGATTAGTGAT GGATGTCAATGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGTCCTCGTGCCTACTATCGTTGCACTATGGG TTCAGGATGCCCAGTCCGCAAGCAGGTAATTAATTAATTATATCCTAAGTTAATTTTCATTATATATATGCCTTTAGTTT TGTATATAGGATTATTGTTTTCATGATATCATATTCTTATTCCATAGGAATCGAATAAGAATAAGAAGTTGGTCATCAGT TTGTAAAGCAAATAAGATATTCCATAAAGATAAGAGTATAAATTCAAATTTTAAAAAAGATATTTATTAAAAGAGATGTG TAATCGTTTCTTAAATCGGTAACGCAACCACTAATATATTTTTTTATTCCATTCTTTTGCATAACAGGTGCAAAGGTGCG CAGAGGACAGGACAGTGCTGATAACAACCTATGAAGGCAATCACAACCACCCTCTACCACCACCTGCCACTGCCATGGCA AGCACCACTTCAGCTGCGGCGAAAATGCTGCTTTCAGGAACAGCCGCCTCATCAAAGGAAGCGCTAACAACCTCAGCAGG ATACTTCTCTTCACTGCCCTACGCTTCAGTGGCAACCCTATCAGCTTCTGCACCGTTCCCAACGATCACCCTTGACCTTA CCCACCAGTACCACCACAACCCCATGCAACTTCACCGAGTACCACCTGGTGCAGCGGTCACATTCCCTCTTCCACTAGGG CACCCTATGTTGCTCTCCCAGCAGAAGCTGCTACCACCTGCGGCTCTCCCCCTTCTTCAACTAGGACAACGACCACCAAC GGTTGAAACAATGAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCATTGGCAGCAGCAATCTCATCAATCATAA GAGGGAGTGATGGTCATAATAACAGTAGTAGTGATGTTAATAACAATAGCAATAATGGAAGTGCTATTATTCCCGGTTCA CCACAACTTCCTCAGTCATGCACTACATTCTCCACCAACTAGGTCTACTAGCTAGCTAGTGTGTGAATTTTGAACCACTC TATGTAGTTTATATTAATCTATATATATGTACAGAAGGAGCAGAATATTAGGCCTTCGATCTTGGCTTGTTGTTATATTA TATATTTATATATGTAAACAAATAATTTGAATTAGGGGTGCATATGAGTTGAGTTTGGTAAATCCAATGAACCTGTCTGA TCCATCTCAATCCAATGAAAAAAAATACTGGTTGAATTGGGCAAACGGATCAATCAGCGGACGAATTTTATTATAATCCA ATCAACTTCGGATCGGATATTGAATTTAATAATAATTCACTCAACCCAACCCGAAATTCAAACATACAATAATACTATAT TTTTAATGTTTTTACCTAACCCATGTAAATTCTAAACCCCTAATTTTATTCCACATTTTCACATTTCACATTCTTCACTC TTTCTTTCAATTTTATTTGACATGTCGGAGAAGGGAGATATCTCAATTCTAAGTGCCATGCCATTCTCGTAATGATTAAC TTGATTCTATTATCGTAGTTCTTTTTC
CDS sequence (LotjaGi1g1v0754400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGAACCGACACCATCAACGCCGTGAATTCTCCTTCTTAAGCTCAGGCGGCGACTTCCACCGCCACAATCTCAA TCTTGATTGTTCCACAAACAACACAGATCCTCCTACTCCTCCTCCCTTCAAAGAAATGGATTTCTTCAAAATTCATCCTC ATAATAGCAACAAAGATGCTGCTGCTGCTGCTGATGATGATCACCACCAACAACAACAGCAACAGCAGTATGATCAAGAT CAACGTGACACTCATCTCACCATCACCAAACATGAATCACCATCTCTCGTCACTCATCACCCCGTAAACACTGGACTGAA TTTAACATGCTCAAGTTCTGCAAATAATGGTGAAGAAAATACTGAAACTGAGCTGAGTAGAGTTGAAAGTGAATTGCGGA GAGTACAAGAAGAGAATCACAAGTTGAGAATTGTGTTGGACCAGATCACCAAAAGCTATAACCAACTACAAGCTCACCTG CACTTTATCGTTTTGCACAAACAAAACCCTCATCATCAGAATATCGAAATAAATGGGATGATAGCGGGACAAAAATATGT GGACCCAGGACCATGCACAAAATTAGATGTCAAAATTGATGCATCAATTAATTCTGATGATAAGAGTGATCGCGAGGCAT CAATTTCTCCTTCAAACAATAAGGAAGTGATGTCAAACAAACGCGACCATCATCATTTGACTACTAAACCAGCTGATCTT GGAAAGCAGCAAGCTTGTCCTGGTCCTACTGGAGATGTGCTTGACCGGTCATCCTCACAGAGTTTGGGCTCACCCAAGTT AGAAGAATCCAAAACTGCTGAACACGTTGCCGGTGACCAGTTTCAGCTCAGAAAAGCCAGGGTTTCCGTGCGTGCAAGAT CAGAAGCTCCCATGATTAGTGATGGATGTCAATGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGTCCTCGT GCCTACTATCGTTGCACTATGGGTTCAGGATGCCCAGTCCGCAAGCAGGTGCAAAGGTGCGCAGAGGACAGGACAGTGCT GATAACAACCTATGAAGGCAATCACAACCACCCTCTACCACCACCTGCCACTGCCATGGCAAGCACCACTTCAGCTGCGG CGAAAATGCTGCTTTCAGGAACAGCCGCCTCATCAAAGGAAGCGCTAACAACCTCAGCAGGATACTTCTCTTCACTGCCC TACGCTTCAGTGGCAACCCTATCAGCTTCTGCACCGTTCCCAACGATCACCCTTGACCTTACCCACCAGTACCACCACAA CCCCATGCAACTTCACCGAGTACCACCTGGTGCAGCGGTCACATTCCCTCTTCCACTAGGGCACCCTATGTTGCTCTCCC AGCAGAAGCTGCTACCACCTGCGGCTCTCCCCCTTCTTCAACTAGGACAACGACCACCAACGGTTGAAACAATGAGTGCA GCCATTGCTTCGGATCCGAACTTCACTGCAGCATTGGCAGCAGCAATCTCATCAATCATAAGAGGGAGTGATGGTCATAA TAACAGTAGTAGTGATGTTAATAACAATAGCAATAATGGAAGTGCTATTATTCCCGGTTCACCACAACTTCCTCAGTCAT GCACTACATTCTCCACCAACTAG
Protein sequence (LotjaGi1g1v0754400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEENRHHQRREFSFLSSGGDFHRHNLNLDCSTNNTDPPTPPPFKEMDFFKIHPHNSNKDAAAAADDDHHQQQQQQQYDQD QRDTHLTITKHESPSLVTHHPVNTGLNLTCSSSANNGEENTETELSRVESELRRVQEENHKLRIVLDQITKSYNQLQAHL HFIVLHKQNPHHQNIEINGMIAGQKYVDPGPCTKLDVKIDASINSDDKSDREASISPSNNKEVMSNKRDHHHLTTKPADL GKQQACPGPTGDVLDRSSSQSLGSPKLEESKTAEHVAGDQFQLRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPR AYYRCTMGSGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPPATAMASTTSAAAKMLLSGTAASSKEALTTSAGYFSSLP YASVATLSASAPFPTITLDLTHQYHHNPMQLHRVPPGAAVTFPLPLGHPMLLSQQKLLPPAALPLLQLGQRPPTVETMSA AIASDPNFTAALAAAISSIIRGSDGHNNSSSDVNNNSNNGSAIIPGSPQLPQSCTTFSTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 540 | 519 | 2.2E-148 | – | |
| PANTHER | 22 | 540 | 519 | 2.2E-148 | – | |
| MobiDBLite | 29 | 125 | 97 | - | – | |
| MobiDBLite | 47 | 66 | 20 | - | – | |
| MobiDBLite | 67 | 82 | 16 | - | – | |
| MobiDBLite | 90 | 121 | 32 | - | – | |
| Coils | 118 | 152 | 35 | - | – | |
| MobiDBLite | 203 | 276 | 74 | - | – | |
| MobiDBLite | 223 | 237 | 15 | - | – | |
| MobiDBLite | 253 | 267 | 15 | - | – | |
| Gene3D | 277 | 361 | 85 | 4.9E-33 | ||
| SUPERFAMILY | 292 | 360 | 69 | 1.05E-27 | ||
| ProSiteProfiles | 294 | 360 | 67 | 29.769 | ||
| SMART | 299 | 359 | 61 | 9.1E-36 | ||
| Pfam | 301 | 358 | 58 | 3.1E-24 | ||
| MobiDBLite | 505 | 540 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0754400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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