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LotjaGi1g1v0754400.3

Overview

Field Value
Gene ID LotjaGi1g1v0754400
Transcript ID LotjaGi1g1v0754400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor, putative; TAIR: AT4G04450.1 WRKY family transcription factor; Swiss-Prot: sp|Q9XEC3|WRK42_ARATH WRKY transcription factor 42; TrEMBL-Plants: tr|I1NBI8|I1NBI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:132748772..132752652) extracted from Lotus japonicus Gifu genome v1.2.

GTTGAAAAGCCTCAATATTGATAGTAATTGGCAACACACACACGAACTACCAGCCACTTCTCGATTCATTCATTTCATTG CAACACACCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAACTATGGAGGAGAACCGACACCATCA ACGCCGTGAATTCTCCTTCTTAAGCTCAGGCGGCGACTTCCACCGCCACAATCTCAATCTTGATTGTTCCACAAACAACA CAGATCCTCCTACTCCTCCTCCCTTCAAAGAAATGGATTTCTTCAAAATTCATCCTCATAATAGCAACAAAGATGCTGCT GCTGCTGCTGATGATGATCACCACCAACAACAACAGCAACAGCAGTATGATCAAGATCAACGTGACACTCATCTCACCAT CACCAAACATGAATCACCATCTCTCGTCACTCATCACCCCGTAAACGTAAGATTTCAGATATATATATATATATATAATA TAGATAGTGATTTGTGTGATCAATCGAATTTTGAATAAATCCATTTTAATTAATATATGCAGACTGGACTGAATTTAACA TGCTCAAGTTCTGCAAATAATGGTGAAGAAAATACTGAAACTGAGGTTTGTATATATCCATCATAGCTAGCTAGGGCCAT AAATACCCATAATATTAAGTTATATAAATATTGTTTGGAATTTATTTTTTTATTAATCTTGTCAGCTGAGTAGAGTTGAA AGTGAATTGCGGAGAGTACAAGAAGAGAATCACAAGTTGAGAATTGTGTTGGACCAGATCACCAAAAGCTATAACCAACT ACAAGCTCACCTGCACTTTATCGTTTTGCACAAACAAAACCCTCATCATCAGGTATCTGTCTAGTAGTATATAACTAAAT ATATTTCCACCACATGATCTCTATCCGTTTTCATCTTAACTCACGAGCTCAATTTAAACTAAGGGTACTAGTTTTCAATT TTCATGTCGATCAGGTAAACTTTATTTAAATTTCTCCTAGCTAGCAGATAGATATATAACGAAAGCATGATATGTATGTC CGTGTTTGTGTGCCCTTTTCTCCATATTTCTTAGTCAGCAAACAAACAAGGTAGCGTGCAGAGCATATATAAATTATAAA CCATGGCTCTCTAGTCTCTCTACCTAGCTTCCTTTAATTTCCTGTCTTCTTCTAAACTTAGCTATATATATAAAAATATA AATTACATTACCTAGTTTTTATTATTTTGGGTTTGTTTGCGCAAGAAGTCAATAATTAATTATTGTATTAGATTATTTTT AAGAAGTATTATTGTTTGGTTCTTTACAACATGATATACGTTTCTATTTTATTTTCTTAATTAATTAAAAATTTAACACA GAATAATCTCTTTTTTCTTATAAAACCACCGCCTTCACACTTCATAAAACAATGTCATTTTTTATACACTTAAACAATAT CCAATTTCTTTGAATGCAATTGGCTTATTAAAAAATATCATATTTGACATTACCCACCCTCTTTTTTCTCACTATTTCTC TTCATATATATTATTCACTATAAATATTATCATAATTATTAGGTTTCGGCGATCTATGTCCCCGTAAGATAACTCAAGTG ATAGGAGCTGAGAAACATATGAGTTAGGTAGGAGGTCATGAATCGATTTATGACGGGTGCAATTTATCTTTTCGATGTAC TAAAAAAAAAAAGTTTTAATTTGTGCTGTCTATAAAGCAATATTTTAAGAAACAATTAATAGTAAAACAATTACTACTAC CACAGAATTGGCTTTATATAACTCACATATGAATGAAAGTCTTGTCTCTCTTATTTATGTGTAATCTAGCTAACAAATAA TGCAAATATGCGGCTGTGGTCTTAAAAAAACAAATTAAAGGGGGGAATTAATAAGATAAAACTGTCAAAACCTATATATG CTTTTATATACCAACAATTAAAATCCATAATCCATGGCACTTAACAGATAATTGTGGAGCAGAATATCGAAATAAATGGG ATGATAGCGGGACAAAAATATGTGGACCCAGGACCATGCACAAAATTAGATGTCAAAATTGATGCATCAATTAATTCTGA TGATAAGAGTGATCGCGAGGCATCAATTTCTCCTTCAAACAATAAGGAAGTGATGTCAAACAAACGCGACCATCATCATT TGACTACTAAACCAGCTGATCTTGGAAAGCAGCAAGCTTGTCCTGGTCCTACTGGAGATGTGCTTGACCGGTCATCCTCA CAGAGTTTGGGCTCACCCAAGTTAGAAGAATCCAAAACTGCTGAACACGTTGCCGGTGACCAGTTTCAGCTCAGAAAAGC CAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCCATGGTACGTAATGCATTTAATTTGAAATATGATTAAAAGAATGGGC ATGTGGAAATTATTTAAGTAATGCAACATTAATATTCTATATATGTTGGAAATTTTCCTTTCAGATTAGTGATGGATGTC AATGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGTCCTCGTGCCTACTATCGTTGCACTATGGGTTCAGGA TGCCCAGTCCGCAAGCAGGTAATTAATTAATTATATCCTAAGTTAATTTTCATTATATATATGCCTTTAGTTTTGTATAT AGGATTATTGTTTTCATGATATCATATTCTTATTCCATAGGAATCGAATAAGAATAAGAAGTTGGTCATCAGTTTGTAAA GCAAATAAGATATTCCATAAAGATAAGAGTATAAATTCAAATTTTAAAAAAGATATTTATTAAAAGAGATGTGTAATCGT TTCTTAAATCGGTAACGCAACCACTAATATATTTTTTTATTCCATTCTTTTGCATAACAGGTGCAAAGGTGCGCAGAGGA CAGGACAGTGCTGATAACAACCTATGAAGGCAATCACAACCACCCTCTACCACCACCTGCCACTGCCATGGCAAGCACCA CTTCAGCTGCGGCGAAAATGCTGCTTTCAGGAACAGCCGCCTCATCAAAGGAAGCGCTAACAACCTCAGCAGGATACTTC TCTTCACTGCCCTACGCTTCAGTGGCAACCCTATCAGCTTCTGCACCGTTCCCAACGATCACCCTTGACCTTACCCACCA GTACCACCACAACCCCATGCAACTTCACCGAGTACCACCTGGTGCAGCGGTCACATTCCCTCTTCCACTAGGGCACCCTA TGTTGCTCTCCCAGCAGAAGCTGCTACCACCTGCGGCTCTCCCCCTTCTTCAACTAGGACAACGACCACCAACGGTTGAA ACAATGAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCATTGGCAGCAGCAATCTCATCAATCATAAGAGGGAG TGATGGTCATAATAACAGTAGTAGTGATGTTAATAACAATAGCAATAATGGAAGTGCTATTATTCCCGGTTCACCACAAC TTCCTCAGTCATGCACTACATTCTCCACCAACTAGGTCTACTAGCTAGCTAGTGTGTGAATTTTGAACCACTCTATGTAG TTTATATTAATCTATATATATGTACAGAAGGAGCAGAATATTAGGCCTTCGATCTTGGCTTGTTGTTATATTATATATTT ATATATGTAAACAAATAATTTGAATTAGGGGTGCATATGAGTTGAGTTTGGTAAATCCAATGAACCTGTCTGATCCATCT CAATCCAATGAAAAAAAATACTGGTTGAATTGGGCAAACGGATCAATCAGCGGACGAATTTTATTATAATCCAATCAACT TCGGATCGGATATTGAATTTAATAATAATTCACTCAACCCAACCCGAAATTCAAACATACAATAATACTATATTTTTAAT GTTTTTACCTAACCCATGTAAATTCTAAACCCCTAATTTTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0754400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAGCGGGACAAAAATATGTGGACCCAGGACCATGCACAAAATTAGATGTCAAAATTGATGCATCAATTAATTCTGA TGATAAGAGTGATCGCGAGGCATCAATTTCTCCTTCAAACAATAAGGAAGTGATGTCAAACAAACGCGACCATCATCATT TGACTACTAAACCAGCTGATCTTGGAAAGCAGCAAGCTTGTCCTGGTCCTACTGGAGATGTGCTTGACCGGTCATCCTCA CAGAGTTTGGGCTCACCCAAGTTAGAAGAATCCAAAACTGCTGAACACGTTGCCGGTGACCAGTTTCAGCTCAGAAAAGC CAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCCATGATTAGTGATGGATGTCAATGGAGGAAATATGGACAAAAAATGG CCAAGGGTAACCCTTGTCCTCGTGCCTACTATCGTTGCACTATGGGTTCAGGATGCCCAGTCCGCAAGCAGGTGCAAAGG TGCGCAGAGGACAGGACAGTGCTGATAACAACCTATGAAGGCAATCACAACCACCCTCTACCACCACCTGCCACTGCCAT GGCAAGCACCACTTCAGCTGCGGCGAAAATGCTGCTTTCAGGAACAGCCGCCTCATCAAAGGAAGCGCTAACAACCTCAG CAGGATACTTCTCTTCACTGCCCTACGCTTCAGTGGCAACCCTATCAGCTTCTGCACCGTTCCCAACGATCACCCTTGAC CTTACCCACCAGTACCACCACAACCCCATGCAACTTCACCGAGTACCACCTGGTGCAGCGGTCACATTCCCTCTTCCACT AGGGCACCCTATGTTGCTCTCCCAGCAGAAGCTGCTACCACCTGCGGCTCTCCCCCTTCTTCAACTAGGACAACGACCAC CAACGGTTGAAACAATGAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCATTGGCAGCAGCAATCTCATCAATC ATAAGAGGGAGTGATGGTCATAATAACAGTAGTAGTGATGTTAATAACAATAGCAATAATGGAAGTGCTATTATTCCCGG TTCACCACAACTTCCTCAGTCATGCACTACATTCTCCACCAACTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0754400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIAGQKYVDPGPCTKLDVKIDASINSDDKSDREASISPSNNKEVMSNKRDHHHLTTKPADLGKQQACPGPTGDVLDRSSS QSLGSPKLEESKTAEHVAGDQFQLRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGSGCPVRKQVQR CAEDRTVLITTYEGNHNHPLPPPATAMASTTSAAAKMLLSGTAASSKEALTTSAGYFSSLPYASVATLSASAPFPTITLD LTHQYHHNPMQLHRVPPGAAVTFPLPLGHPMLLSQQKLLPPAALPLLQLGQRPPTVETMSAAIASDPNFTAALAAAISSI IRGSDGHNNSSSDVNNNSNNGSAIIPGSPQLPQSCTTFSTN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
22 97 76 - –
MobiDBLite
mobidb-lite
22 36 15 - –
PANTHER
PTHR31429:SF59
26 361 336 1.2E-124 –
PANTHER
PTHR31429
26 361 336 1.2E-124 –
MobiDBLite
mobidb-lite
44 58 15 - –
MobiDBLite
mobidb-lite
74 88 15 - –
Gene3D
G3DSA:2.20.25.80
91 182 92 3.2E-33
IPR036576
SUPERFAMILY
SSF118290
113 181 69 5.62E-28
IPR036576
ProSiteProfiles
PS50811
115 181 67 29.769
IPR003657
SMART
SM00774
120 180 61 9.1E-36
IPR003657
Pfam
PF03106
122 179 58 1.7E-24
IPR003657
MobiDBLite
mobidb-lite
326 361 36 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0754400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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