Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0755500 |
| Transcript ID | LotjaGi1g1v0755500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0B2NTE0|A0A0B2NTE0_GLYSO Squamosa promoter-binding-like protein 12; Found in the gene: LotjaGi1g1v0755500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132870275..132876649) extracted from Lotus japonicus Gifu genome v1.2.
TTGGATTTGATTATTCTATTGTTTGCTTGACATTTTTTTAACAGGTTTCACTTGCTTCAAGAGTTTGATGAGGGAAAGAG AAGCTGTCGGAGGCGTTTGGCGGGCCATAATAAACGGAGGAGGAAAACGAATCAAGATGCTGCTCCGAATGGAAGTTCAC TAAATGATGATCAGACAAGTGGTTATTTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCAGCAATGTAAGTATTTA TTTGATTTTAAATCTGGCTGTAGAACCTAGTTGTATCATATTTATATGATGTTGGTTGATGCTTGTTTGAAATGATGATG AATGGGGTTATCTAATGTGTAGCTAAGTGATTTTGTTTACTATCTAATGGAGAAACAGTCCAAGGGATCATGTGTATTTA GTTATATATGTAGCTAAGTGATTTTTTTTTCATGAGAATCTTCTCTTATTGGTTCTCTTTAATTGGTATTTCATTTATGA CAGAGGTGATTTTGGGATGAACAATGACATTTTTTTTATGAATTATAGCTGACAGGTCAAATCAAACAACAGATCAGGAT CTGCTAACTCATCTTTTAAGAAGTCTTGCTAATCAGAATGGTGAACAAGGAGGCAAGAACTTGTCTAACCTTTTGCAGGA ACAAGAGAATTTATTGAAAGAAGGGAGTTCATCTGGGAAAGCTGGGACGGTTTCCACTCTATTCACAAATGGTTCTCAAG GCTCCCCATCTGTTACTAGACAGCAGCAAACAGTTTCTATTAGTGAAATTCCCCATCAAGTGATGCATGCACAGGATGCT AGGGCTGCTGATCAACAAACCATGTCTTCTACAAAGCCTAGCATTTCAAACAGCCCTCCGGCTTACTCAGAAGCCAGAGA TAGTACTGCTGGACAGACCAAGATGAATAACTTTGATCTGAATGACATATATATTGACTCAGATGATGGCATAGAAGACA TAGAAAGGTTGCCTGTCTCTGCAAATCTGGCTACTAGCTCTCTTGATTATCCATGGATGCAACAGGATTCTCAGCAGTCA AGCCCACCTCAAACAAGTGGAAATTCAGATTCTGGATCTGCCCAGTCCCCTTCTAGTTCCAGTGGAGAAGCCCAGGTAAT TTTTTCCCCTTCTAGTTCCAATGTTCTGGATTGGCTGTTGCGCACAATGCTTATATTACTCATCCCCTATGATTGGGATT TTGTGACTTTCCGTAGAAATTGAGGATAGTTTTCAGTAATAACAACTGCTTTTGTTTGTGGTTCTTAGACTTTGTGTTGC TTCCATAATCTGTCATTCATGATTGGTGGCATGACTTTGAACTGCTCCTTTGATCATCATTCGATAAGAACTAGGGAAAC TGAATGTGAAAATTGATTAAATCAATCAGAATTTCCCCAAATTGTGGAAGAACTGAGAAAGAAAGATGAACACAAGGGTT TCTGGAATTTCAGAGTTCCAGGCTACCCCAGCCAATTCAGTTTCACTTCTAACTTTAGTAACCAATCTTACCTACCCCAA AAGGCTCAGGGTTGTGATCCCCTGCAGTCTTCTTTCCCTTCCTACTGTAAACCTTCACTATGGGTGGCCAGATCGTATCA GTCAGATATGAAAGCATTCATATGAATTGAGGGTGTCATATGATGTTGAGTCCCCAGTAGTTGTTATGCTAAGAAAGACC ATGTGGAAGTTTCATAGGTGTCAGAAATGATACTGCTTTTTTGCTTGCAGAGATTTTTGTGTTGCAATTGGCTACTTGAT ATCTGATTTTCTTGTATGAAGTTGTATTCTGGTTCTAGCTCCTTCCGGTGTTCGCATGAATGAAGCCTTATTGCCTTTTT ATGTTACATTTATAGAATCTTGAGATTGTCATCATTTAATAACTAATTTGTTTGTTTCTACCATTTAGAGTCGCACGGAT CGTATTGTTTTCAAACTCTTTGGTAAAGAACCAAGTGATTTTCCTCTTGTACTTAGATCACAGGTACATTTAGTTTTTTA AAGCATTTAAGAGTAACTGTTGTTTATTTCTTCCTTTAAAATGTAATCATGCTATGGTTTTGGGTTCCAGATTCTTGATT GGTTATCCCAAAGTCCTACTGATATTGAGAGCTATATACGGCCTGGTTGTATCATTTTGACTATTTATCTGCGTCAGGCT GAGGCTGTCTGGGAAGAGGTAAGCATTTTCCTTCTAAAGCTACTCACTCGTGTGCGCCAGTGATCATATCTGTGATTAAG GGACACTCTTTGACCTTATACGTTTCTCTCCTCTCTTTTTTTTCCTCCTACAGCTTTGCTATGATCTGACTTCCAGCTTG AATAGGCTTCTGGATGTCTCAGATGATCCTTTTTGGAGAACTGGATGGGTTCACATAAGGGTGCAACATCAGATAGCCTT CGTTTTCAATGGTATTTTCCAATATTTCTATTGTTGTCTTGTCTAGCTGCTAAGAGAACAGGAGTGAAATTTTGTTGAAG TATTCAATTAAGTCTTTCAACCATGATTTTGGCAATCAAATTACATTAATTGCTTAGAAGTCAAAAGTCCTTTCTATGAC CAATTTTATACATCAAGGTCTTATATCGACATCTATTTCAAGCCATTGCCACATAAGTTGATTTGATGCACTTGATTGAA TGCTGATCTAATTTTATCCACATAGCCGTCATTATTATTATGCTTAGTACACAGAGCAACCACCATATCAATCAGAATAA ATGATGTTTATTTATATGAATAGTTTCTTACTGCAAATTTTCTGCTGCAGGTCAGGTTGTTATAGATACATCCTTACCTT TCAGAAGTCACGATTATAGCAAGATTTTAAGTGTTAGTCCAATTGCTGTACCAGCATCGAAGACATCTCAATTTTCTGTT AAGGGTATCAACCTGAATCGCCCCGCCACTAGGTAGTCTTTACCTGTTGCTATGTGAAATACAAAAACACTGCTCATGTA AACTTAATGCAAAATTCTGAAAGTGTCTTGGACCTGCTCTTTAATACTTGTATGTGTGTGTGTATATATTGTTATATATT GCTATAGCACATGAACCTCAAACCTATTCCTTCAGGTTACTGTGTGCTATAGAAGGGGATTATCTGGCATGTGAAGATGT TAATGAGTCTACAGATCAACACTCCAAGGATCTTGATGAGCTTCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGA ATGGAAGAGGATTTATTGAGGTGCTCTTTGTTTGCTCTCACAAATTATATATTTAGAATTTTATATATTTTACATAATTG CAACTGGCCATTAGGGATGATCAATGGATAGAATAAAACAACATCAAGAAAAAGGTCTTTCATATGATTTCTGGTAGTGG TTCTTCATTGATAGGCCATCTAAGAGGACCACTACACCTGCTGAAGAACAAAACCTCATTGCATTATGTCCTTGGATTTT ATGCGTTAAGTTCAATGAAAGATTCATCATCTTTTGGTTGGGGAGAATGTCTATACTTAGTCATTAGATTGGTTATCTAA TATCCTGAATTGTAATCTCGATGTACTGGACCAACTGGTAATATTTATACATTCTTGGCTTCTTAGGTTAAATTTTTAGG GAAGGAACAAAACCCTCCCCACGGTTGGTTTCAAGGATGATGAAGGACCAGTCATACCTTCATTTTGGTGTAATGGGAGT CATATATGTTGTAGTGGTGGTTTGAACTACCTTCTTGATTGTTTTTTTATAGATTTCTTGGTTACTAAGACTGATAGTCA TATAGTGTAATACGCTAATCATAGTATTAGTAAATGAGATGGAAGTTGTTGCTGCATACACAAGTAGGTTGAGGAAGTAA GGAAAGTATGGTGAGGTTAAGAAGGATACCTGAATGTGATATCTGTTTTTGATATTGTATTCCACTTATACTGCGCTCTT TATGCTAAGTGTAAAGTAATAAATATGTATTGCTTATTATATGGTTTATAGTTTTTACTTTTATGTAATTTCATGCACAC TGATTACTTAAAGTGTTGTCAATGTCCTGATCTATATGTTGTCATTTAATTTTTATCGACATTTAGATGTATCCTTGGAA ATTTGTCATATTCTGAGCTGAATATAACCAAATCTGCATCAATGTTATGTACCTGAGCTTTACTTTTTATTTTCTTAATT ATGTCAGATTGAGGACCAGGGGTTGAGCAGCAGCTTTTTTCCTTTCATTATCGTGGAGGAGGATGTTTGCTCTGAAATCT GTGTGCTTGAGCCTTTACTAGAATTAAATGATACTGATCCAGATATTGAAGGGGCTGGAAAACTTAAAGCCAAATCTCAA GCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAATTGAAATCTCGGATGGTTCACTTGAACTCTAG CGAAGATCTTTTTCCATTAAATCGATTCAATTCGCTATTGGATTTCTCTGTGGAACATGATTGGTGTGCAGTAGTTAAAA AACTGTTGAACCTCCTGCTTGATGGAGCTGTGCATACAGGAGATCACCTTTCCCTGTCTCTTGCACTTTCAGAGCTCGGC CTCCTTCATAAAGCTGTAAGGAGAAATAGCAGGAAATTGGTGGAGCTACTTTTGAGATATGTTCCTGAGAGTACTTCTGA TAAACTAGGACCTGAAGACAAGGAACTTGTTGATAGAAAGAACCAGGTCTTCTTGTTTAGACCTGATGCTGCTGGTCCTG CTGGTTTGACACCACTCCACATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGC ATGGTAAACTTTCTTTCTTCTATCTTAAATTAAGAATCGAGTTATTTAGCAGGGGTGAGACATTCTTGTAGATTCCATTT GGATCTTCACTACATTTAATTCTTGCACAGATTATAGCCTAGGAAGCACGGACACTTCAAAACAGAGGCGTGTCCGCGTG TCGGACACGCGGGCAACACGGACACGCCGCCGACACGTTGCGGACACGTGTCGGACACGTCTGGGGCGTGTCTGAATAAA AAATTATTATTTCTTGGCTCGGACACGGCTAGGACACGGCTTGTTTATTGAGCCGACACACCTTTGTGGCTGGACACATA TAGGGGACACTTGGACTGTTTTTTTATTATTTTCTGACTTAAAAAAAAAGATAAATTAAAAATAAAACAAACTTTATCTA ATTAAAAATAAAAAAAACCTTATCAAATCAGGTCTTGTGAACATATTATCATGTTTATATATATATATATATATATATAT ATCTTGCTGGACTGCTGATTTCATAGTTGCACTATCCTGTTTTTTCTATGTAATCGTGCATGCTCTAGACTTGGGCTCAA TCACAAGCTGGCTCTTCACATTCATGTCATCTATCTGCTATTGTTGCTTCTGTTTTCTTTTTATTTCTGCATTTGTATCT TTCCTGTAACCGTTTTATGTTGCAGAGGTTATAACCTCTTGCTTTTTGTACTTTGACTCCTTTTTTTCAATATATATATT ATCATTTATCTCTAATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAGCCGTGTC GGCGTTCCCGCCCGTGTCCGTGCTTCATAGATTATAGCCCATTATTTCCCAAATCTTGCATTATAACTGTTATTTGAATT GTTGTCACGCTTCTACTCCTTGAGTTGAATTATTTACAACTTGGGTTTGTTGAATTTATTAGCATCTTCTTGGTACAAAA CAGTCCTGTATATACTTGTGCCACTGATAATATCACGCCCTGGGTATAGTTGAAAATGGCCTCTATGATGATCCCCTTTT GAAAAACATTTTCATGTCAAGTTGAAAACCAAGAGTATTATGTTTATCTTAGTGATATTTAGTTTTTCATCATAACTTTT TAATTCAGGTGGGAGTTGAAGCATGGAAGACTGCTCGTGACAGCACTGGCTCCACACCTGAAGATTATGCACGTTTACGT GGGCATTATACTTACATTCACTTGGTGCAAAAGAAAATCAACAAGAGACAAGTAGGGTCTCATGTGGTTGTTGACATTCC CAACAATCTGACCAGGTTCAATGCAAACGAGAAACAAGATGAGTTGTTGTCCACTAGCTTTGAGATTGGAAAGGCTGAAG TCAAAAGTGTCCAAAAGCTCTGCAAACTTTGTGATCTTAAGTTATCTTGTAGAACTGCTGCAGGCAGGTCCTTGGTGTAC AAACCTGCAATGCTGTCAATGGTGGCCGTGGCAGCAGTTTGTGTCTGTGTGGCTCTTCTGTTTAAAAGCTCACCAGAAGT TCTGTATATATTCCGACCCTTCAGGTGGGAATCGTTGGAGTTCGGGACAAGCTGA
CDS sequence (LotjaGi1g1v0755500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAATCTGACAGGTCAAATCAAACAACAGATCAGGATCTGCTAACTCATCTTTTAAGAAGTCTTGCTAATCAGAA TGGTGAACAAGGAGGCAAGAACTTGTCTAACCTTTTGCAGGAACAAGAGAATTTATTGAAAGAAGGGAGTTCATCTGGGA AAGCTGGGACGGTTTCCACTCTATTCACAAATGGTTCTCAAGGCTCCCCATCTGTTACTAGACAGCAGCAAACAGTTTCT ATTAGTGAAATTCCCCATCAAGTGATGCATGCACAGGATGCTAGGGCTGCTGATCAACAAACCATGTCTTCTACAAAGCC TAGCATTTCAAACAGCCCTCCGGCTTACTCAGAAGCCAGAGATAGTACTGCTGGACAGACCAAGATGAATAACTTTGATC TGAATGACATATATATTGACTCAGATGATGGCATAGAAGACATAGAAAGGTTGCCTGTCTCTGCAAATCTGGCTACTAGC TCTCTTGATTATCCATGGATGCAACAGGATTCTCAGCAGTCAAGCCCACCTCAAACAAGTGGAAATTCAGATTCTGGATC TGCCCAGTCCCCTTCTAGTTCCAGTGGAGAAGCCCAGAGTCGCACGGATCGTATTGTTTTCAAACTCTTTGGTAAAGAAC CAAGTGATTTTCCTCTTGTACTTAGATCACAGATTCTTGATTGGTTATCCCAAAGTCCTACTGATATTGAGAGCTATATA CGGCCTGGTTGTATCATTTTGACTATTTATCTGCGTCAGGCTGAGGCTGTCTGGGAAGAGCTTTGCTATGATCTGACTTC CAGCTTGAATAGGCTTCTGGATGTCTCAGATGATCCTTTTTGGAGAACTGGATGGGTTCACATAAGGGTGCAACATCAGA TAGCCTTCGTTTTCAATGGTCAGGTTGTTATAGATACATCCTTACCTTTCAGAAGTCACGATTATAGCAAGATTTTAAGT GTTAGTCCAATTGCTGTACCAGCATCGAAGACATCTCAATTTTCTGTTAAGGGTATCAACCTGAATCGCCCCGCCACTAG GTTACTGTGTGCTATAGAAGGGGATTATCTGGCATGTGAAGATGTTAATGAGTCTACAGATCAACACTCCAAGGATCTTG ATGAGCTTCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGG TTGAGCAGCAGCTTTTTTCCTTTCATTATCGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAGCCTTTACTAGA ATTAAATGATACTGATCCAGATATTGAAGGGGCTGGAAAACTTAAAGCCAAATCTCAAGCCATGGATTTCATTCATGAAA TGGGTTGGCTTCTCCACAGAAGCCAATTGAAATCTCGGATGGTTCACTTGAACTCTAGCGAAGATCTTTTTCCATTAAAT CGATTCAATTCGCTATTGGATTTCTCTGTGGAACATGATTGGTGTGCAGTAGTTAAAAAACTGTTGAACCTCCTGCTTGA TGGAGCTGTGCATACAGGAGATCACCTTTCCCTGTCTCTTGCACTTTCAGAGCTCGGCCTCCTTCATAAAGCTGTAAGGA GAAATAGCAGGAAATTGGTGGAGCTACTTTTGAGATATGTTCCTGAGAGTACTTCTGATAAACTAGGACCTGAAGACAAG GAACTTGTTGATAGAAAGAACCAGGTCTTCTTGTTTAGACCTGATGCTGCTGGTCCTGCTGGTTTGACACCACTCCACAT AGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAGTTGAAGCATGGA AGACTGCTCGTGACAGCACTGGCTCCACACCTGAAGATTATGCACGTTTACGTGGGCATTATACTTACATTCACTTGGTG CAAAAGAAAATCAACAAGAGACAAGTAGGGTCTCATGTGGTTGTTGACATTCCCAACAATCTGACCAGGTTCAATGCAAA CGAGAAACAAGATGAGTTGTTGTCCACTAGCTTTGAGATTGGAAAGGCTGAAGTCAAAAGTGTCCAAAAGCTCTGCAAAC TTTGTGATCTTAAGTTATCTTGTAGAACTGCTGCAGGCAGGTCCTTGGTGTACAAACCTGCAATGCTGTCAATGGTGGCC GTGGCAGCAGTTTGTGTCTGTGTGGCTCTTCTGTTTAAAAGCTCACCAGAAGTTCTGTATATATTCCGACCCTTCAGGTG GGAATCGTTGGAGTTCGGGACAAGCTGA
Protein sequence (LotjaGi1g1v0755500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQSDRSNQTTDQDLLTHLLRSLANQNGEQGGKNLSNLLQEQENLLKEGSSSGKAGTVSTLFTNGSQGSPSVTRQQQTVS ISEIPHQVMHAQDARAADQQTMSSTKPSISNSPPAYSEARDSTAGQTKMNNFDLNDIYIDSDDGIEDIERLPVSANLATS SLDYPWMQQDSQQSSPPQTSGNSDSGSAQSPSSSSGEAQSRTDRIVFKLFGKEPSDFPLVLRSQILDWLSQSPTDIESYI RPGCIILTIYLRQAEAVWEELCYDLTSSLNRLLDVSDDPFWRTGWVHIRVQHQIAFVFNGQVVIDTSLPFRSHDYSKILS VSPIAVPASKTSQFSVKGINLNRPATRLLCAIEGDYLACEDVNESTDQHSKDLDELQCIQFSCSVPVMNGRGFIEIEDQG LSSSFFPFIIVEEDVCSEICVLEPLLELNDTDPDIEGAGKLKAKSQAMDFIHEMGWLLHRSQLKSRMVHLNSSEDLFPLN RFNSLLDFSVEHDWCAVVKKLLNLLLDGAVHTGDHLSLSLALSELGLLHKAVRRNSRKLVELLLRYVPESTSDKLGPEDK ELVDRKNQVFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGVEAWKTARDSTGSTPEDYARLRGHYTYIHLV QKKINKRQVGSHVVVDIPNNLTRFNANEKQDELLSTSFEIGKAEVKSVQKLCKLCDLKLSCRTAAGRSLVYKPAMLSMVA VAAVCVCVALLFKSSPEVLYIFRPFRWESLEFGTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 708 | 708 | - | – | |
| PANTHER | 3 | 755 | 753 | 0.0 | – | |
| PANTHER | 3 | 755 | 753 | 0.0 | – | |
| MobiDBLite | 22 | 85 | 64 | - | – | |
| MobiDBLite | 22 | 128 | 107 | - | – | |
| MobiDBLite | 94 | 128 | 35 | - | – | |
| MobiDBLite | 167 | 200 | 34 | - | – | |
| Gene3D | 478 | 693 | 216 | 1.3E-9 | ||
| SUPERFAMILY | 486 | 640 | 155 | 2.49E-7 | ||
| Phobius | 709 | 732 | 24 | - | – | |
| Phobius | 733 | 755 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0755500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…