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LotjaGi1g1v0759200.1

Overview

Field Value
Gene ID LotjaGi1g1v0759200
Transcript ID LotjaGi1g1v0759200.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT2G34830.1 WRKY DNA-binding protein 35; Swiss-Prot: sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35; TrEMBL-Plants: tr|I3SFN8|I3SFN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0759200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:133246781..133249194) extracted from Lotus japonicus Gifu genome v1.2.

GTTTAAATATTATTATGGATATTGCAAATATCTTTGTATTTAAGGGTGTTTATTAGTATATTGCAATTTGCAAAGGTGGG GTTGCTGGGGCTGGTGGAGGTTGATACATGCATAGTTGCTCACAAAGCTTGATATTAAATGTGTGAAAAGAAAGAGAGAA AGCAACTTGAAGGCTTTGCCATTATCTCTTCCTCCTTCTCTCTCTCACTCTCTCTCTCTCTCTTATCTAATCATTCAAAA AGCTTTGATCAAGCTTGATCCACTTACCTCAGAAAACTCCATATCCCAATTCAAAGCTTGCAGCAAGAAATTCAAAAGGA ATAGGCAGCTATGGAAAATAATGCCAGCCCCCAACTTGAGTCAGAAGCATCTTTGGAGCTCAAATTAGAAACTCAAGCAT CCAAGAAACAGTGAGTTGTCCTTTGGAAGAAAATGAAAGTAGACAAAATATACTGTTTAAACTTTAAATATGCAGTTCTT AGTTACATTTGATCTTATTGTTTGCTGACAAGATTCTTTCTTTTTCCTAGTTTTGGTAAATTGCTGTTAGCATGTTTTAC ATATGCTGTTGTGCATGTTGCAGGAAAATGGTTGAGAAAACAGTTGTTACTGTGAAGATAGGAGAGAATGTTAGCAAGGT GAAGAAGAATGAAGGGCTCCCTTCTGATTTTTGGTCTTGGAGGAAATATGGACAAAAGCCAATCAAAGGTTCTCCATATC CAAGGTGCACATTCTTTTCACCACATCATGATCATGTACTGTTCTTGATCTACATATTATTCCAAATCTCACAGAAATTC TAATTCAGAAGAACAAAAAACGGTTAATTTTGTGCCTCTTAGCTCTTTTTTTACTACTCATAGCATTAAAGTGCACTTTT AGAAACCTAGTACAATTTGATTTCAGAACCATAACCATTTCCGGAAAGAGAGAAACTTCTGTAAATAAATTCTAAATTTC AAAATTGATTCCAATAAAAAGAAGCTGATTCAAACATACTAATAGTAAGATTGAGTCAACCAGGTATATTAACCCTACTA ACCCAAGAGGAAAGATAATCCAAAGGATATTGCTTTTCTGACTTCTTAAACCATGTTTGGATTTGACTTCTTTTGCAAAT TTTCTTTTAAAGCTCTGCCACAAAACTACAACATAAGCTAATTCCACCAATGAACACTTACATCTCCTCAGAATTGATTC TGGCTTCACAATTAATTATAAAAAAGTATTTCCAGAGATGCATTTTATGTCTTCCCTGCAAGATCTTACAGAACAGTTTG TGATTGCTACAATTCTGCAGGGGATATTATAAGTGCAGCACATCCAAAGGGTGCTCAGCCAAAAAGCAAGTAGAGAGATG CAGAACAGATTCTTCCATGCTCATCATCACCTACACCTCTACACATAACCATCCAGGTCCCACCACAAATTTACCCCAAC AACAACAAAAAGAATCTGAATCAGAAACCACTGAAAATCTCCCAGGTACCTTGAAGGAGGAAGAAGAACAAGAACAGGTA GAAAATTTCCCAGCTACCCTGAAGGAGGAAGAAGAACAAGAACAGATAGAAAATCTCCCAGCTACCTTGAAGGAGGAAGA AGAGCAAGAACAGATAGAAGTAGAAGAGGAAGAAGTGAATACTAATAGCAGTAGCACCATGACTAGTAGTGATCAAGGTG CAAATGAAGAAATTTTTCATTACTTGCAATCTCCAATTATAGACCAAGAAGAAGATCCTTTCAAACTGGAAAAAAACAAT GACAGAATAGATTTACTCTTAGAGGCAGAGCCTCTCTGTTATGCAGCACAGGTGAGGAACTTGTCAACATCCAAAACAGA AGAGCTTGAGATTTTCGATGAGCTTGAGGAGCTACCCATGTTTTCATCTTTTCTACACTTCACGAGGAGCATTCTCTCCG ATGAAAGGATTCCTGTTGCTCCTTCTTGATTCAAGTGTTTTTTCCCCATGCTTGTTGTTTTCACCTAGAAGAATGTAAAC TAGTGTATTGTTCATACATGCTTGTAGTTCACTTCAGCTAGTTTTTTTAGTTGGGAATCTTTTTTTTTTCTCTCCCTTTG TTTATATGAAGAATGGTTTACTTAATTACACAAACATGTTGCTAGTTCTATTATCAATGAGGATAAGCATAGATCCTATA ATTAATGAAAGAAAAATTAAATATATCAAATATGTCAGGGCACATCAACATATGTTGTTACTTATATAAATAATACATGT ATCACTTAAACATCATGTGGTTCATCGATTTAACTAAAAACAAAACTCACACTATTAGTATGTTTGGATCGACTTTTCTT TTTGCAGAATTAATTCTAACGCTTAGAAGCTACTTATTATGTAAGCAGTTAGTAGAACAAGGTCTTTTTCATAATTCTTG GGTGCTTCATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0759200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAATAATGCCAGCCCCCAACTTGAGTCAGAAGCATCTTTGGAGCTCAAATTAGAAACTCAAGCATCCAAGAAACA GAAAATGGTTGAGAAAACAGTTGTTACTGTGAAGATAGGAGAGAATGTTAGCAAGGTGAAGAAGAATGAAGGGCTCCCTT CTGATTTTTGGTCTTGGAGGAAATATGGACAAAAGCCAATCAAAGGTTCTCCATATCCAAGGGGATATTATAAGTGCAGC ACATCCAAAGGGTGCTCAGCCAAAAAGCAAGTAGAGAGATGCAGAACAGATTCTTCCATGCTCATCATCACCTACACCTC TACACATAACCATCCAGGTCCCACCACAAATTTACCCCAACAACAACAAAAAGAATCTGAATCAGAAACCACTGAAAATC TCCCAGGTACCTTGAAGGAGGAAGAAGAACAAGAACAGGTAGAAAATTTCCCAGCTACCCTGAAGGAGGAAGAAGAACAA GAACAGATAGAAAATCTCCCAGCTACCTTGAAGGAGGAAGAAGAGCAAGAACAGATAGAAGTAGAAGAGGAAGAAGTGAA TACTAATAGCAGTAGCACCATGACTAGTAGTGATCAAGGTGCAAATGAAGAAATTTTTCATTACTTGCAATCTCCAATTA TAGACCAAGAAGAAGATCCTTTCAAACTGGAAAAAAACAATGACAGAATAGATTTACTCTTAGAGGCAGAGCCTCTCTGT TATGCAGCACAGGTGAGGAACTTGTCAACATCCAAAACAGAAGAGCTTGAGATTTTCGATGAGCTTGAGGAGCTACCCAT GTTTTCATCTTTTCTACACTTCACGAGGAGCATTCTCTCCGATGAAAGGATTCCTGTTGCTCCTTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0759200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENNASPQLESEASLELKLETQASKKQKMVEKTVVTVKIGENVSKVKKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCS TSKGCSAKKQVERCRTDSSMLIITYTSTHNHPGPTTNLPQQQQKESESETTENLPGTLKEEEEQEQVENFPATLKEEEEQ EQIENLPATLKEEEEQEQIEVEEEEVNTNSSSTMTSSDQGANEEIFHYLQSPIIDQEEDPFKLEKNNDRIDLLLEAEPLC YAAQVRNLSTSKTEELEIFDELEELPMFSSFLHFTRSILSDERIPVAPS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31282
10 189 180 1.2E-79 –
PANTHER
PTHR31282:SF9
10 189 180 1.2E-79 –
Gene3D
G3DSA:2.20.25.80
38 115 78 4.6E-29
IPR036576
ProSiteProfiles
PS50811
48 114 67 31.835
IPR003657
SUPERFAMILY
SSF118290
51 114 64 7.19E-26
IPR036576
SMART
SM00774
53 113 61 2.1E-35
IPR003657
Pfam
PF03106
55 112 58 1.8E-24
IPR003657
MobiDBLite
mobidb-lite
107 133 27 - –
MobiDBLite
mobidb-lite
107 146 40 - –
Coils
Coil
156 176 21 - –
PANTHER
PTHR31282:SF9
161 289 129 1.2E-79 –
PANTHER
PTHR31282
161 289 129 1.2E-79 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0759200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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