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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0760300 |
| Transcript ID | LotjaGi1g1v0760300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G41840.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0760300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133347676..133350418) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGACATGCTCCAAACGATTTACAAAGAAGATGAGTTTTTTCAATTATTTTTCCGACAAATGATCTAGTTCAGACGGC AACACAAAGACATTGACTAATTTAAGGATTAACCCTATTAAATATAGATGAATGATGATAGTTGAGAACATCCCTCACTC ATGTAGGAGAGACATAAAGACACCCCCAAGGTTTTGTCCAAAACCCTCTCCACTTCCGCTCCCAAACAGGTCCCTCTCTC ACCCTCCCTAGCTCAAACTCATATTGGCATCGATCCCTTGAATTTTCTGTTCCCATCGCTCCTTGTTGATCTAGGATTTT GAGCTGCGCGAAGGATGAGTGGATCTCCGTCAGAGAGCTTCTCCTACGGCGGCGGCACCACCGTTCCTGAATCCGATCAC TGTTGCGACTGGATTAGCACCTTACCAGACGCAATCCTCTGTTTCATACTTTCCTTTCTCCCAACCAAGCAAGTCATTGC TACAAGCGTCCTCTCCAAGCGGTGGCAGCCACTGTGGCGCTCAGTCTCCACTCTGGACTTCGAAGTTGGGACTTACTATA ACAGAAGCAAAGAGGATTATGCTCGTCTTCTTCACTCTGTTTCTGCACTCATCCAGCATCTTCACCATCCCATCCACAAA TTCCGCATCAGGTGTATCAGCGTATCTCTTTTTTTTCCATTGCTTTTACATGTAAATTGGTCAGCTTAGTATTAGTCTCA CTGCTATCCGCTGTAGATAACTGGTTAACCCCGATGAATTAGTCTCACTGTTATCGGATAACTGGTTAACACTGATGAAT TAGTCTCACGGCTATCGGCTTTAGATAACTGGTTAATACCAATGAATTAGTCTCACTGCTATCGGGCAGATAACTAGCTA ACACTGAAAAAGAGATAAATGCAAATATGCTGATTCTTTTTGTATTGTTGTTTAACTTTTCTCACAATTTTTTTTAGATG TTGCCAACTCCAAGATTCTTTCCGCCCTTTCCAGTATATCTCTCCTTTTACTGATCCTGCCCATGTCACCAAATGGGTTA ATGCTGCTGTGCAACGCGGAGGACTTCAACACCTCCATCTCTGCCTCTCCTCCAAACTCGTGTATCGTGAACCACCCATC AACTTGTCTACCATCGTCATGTTCAGTTGTAAAACTCTGGTGGTTCTCAAGTTAGAGCATATCTGGTTGGAGCCAATTTC CTCTGTTGATCTACCATTACTGAAAGTCATGCATCTATATTATTTGACTTTCGCAGAACCTCGATGTCTCGCCAAGCTTC TTTCTGGATGTCCAATTCTTGAGGATTTTAAAGAATTTAAAATAAGATTTGAAGATGGTGAAGATGACACTGAGACTGAG TTTAAAACCATGCCCAAGTTGCTCAGAGCAGATATTTATAATTTTGATTCAAATATTATGCTGAAAGTGGTTAACAATGT CAAGTTTTTGCACATAGATAGGGTAATGTGATTTATGAATCATTACTTTTCTTTCCTAAGTGATATGGGATATTTGATTT CTTCTTCTTGTAACTCATGCAGATTGAAGAGAGTCTTGTACATGACACAGAACCCTACGATTTCCCCATGTTTCACAATT TGACCCATATGCAACTTGACTATATTGATTGCAATATTGATTGGTCTGATGTAGTGGAGTTGATCAAGAATTGCCCCAAG CTTCAAGTTCTTGTCATTTACCAGGTTTGATTAGAGGCTTAGAATGATTTCTATTTTTTGTCACTTCTTCAGTTCATTTA TTTACTGTGTGTTTGTTGTTAACAGCCAGAAGAAACAGCGAATTGGCAGTACCCACCATCTATATTACACCTTCAAAGAT GCACCAAAGATGATGAGTTTAAATTTGCAAGGTATATAGCGGAAGATTCGAACGAAGATGACAATATGCAGTGGGATTTT TATAAATTAACTAGTAGCCAACTAGAATTGGTAGATGAAAGTAGTTTCTACTATTCTTCATTTTTTTATACTTCCTTTTA ACTGTTAGCTAGCTACAACTATCTACAAGACCTCATCTTAATTTTCAAATTAATTGAACTTATTCGTTTATGATCATTAA TTGTAAATTTGAGATATAGTGCTGAAGTGTGAGGCAATTGTAGGTTAACTTCTAATATTATGCAAACCTCCATGGTAGTG GTAGGTAGGTGTGAATCAACTGCATCCTATTTACAAGCACAAATTCTTCTCAGGATAAGGCAAATTTCTAGTCTTAGTCA GTTTCTCCACATTCATTGAGAAATTTTTCTCAGGAAATCCACAATGAGGCTGTTCTCCCTAAAAGAGTCTTACGTAAACC ACTATATATGCATGATTAGTTTAAGCAAATATGGCACTGTAAGATTCTATAGAAAATTCCACAGCTCCAGAGTACTCAAA CCTTCATATATTTCTTCGATAATATGTATGATGCTTTGGTTTTATTGTTTTTGGATATGGAGTGTGTTTGATAACAACCG TTCCATATTGATGGTATCTAATCAAACATGTCATCTCCTGATGAATAGGTCATAGGCCTCTTTGTACTCTGCATTAATTA ACCATTGCTAAATATCGGTACATTAATTTGTGTTTGAACTAAAGATTAAGTTACCACCAAACATTATCAATTGACACAGG GGTCTCGAATTCAAGTTCCTATAAATGTAGTTGTGTTAAATACTTAGTAGAGAGAGCTTCAATACCCTCAGTATCTTACT TTGCTTGAATAAAATTATTTGAG
CDS sequence (LotjaGi1g1v0760300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGATCTCCGTCAGAGAGCTTCTCCTACGGCGGCGGCACCACCGTTCCTGAATCCGATCACTGTTGCGACTGGAT TAGCACCTTACCAGACGCAATCCTCTGTTTCATACTTTCCTTTCTCCCAACCAAGCAAGTCATTGCTACAAGCGTCCTCT CCAAGCGGTGGCAGCCACTGTGGCGCTCAGTCTCCACTCTGGACTTCGAAGTTGGGACTTACTATAACAGAAGCAAAGAG GATTATGCTCGTCTTCTTCACTCTGTTTCTGCACTCATCCAGCATCTTCACCATCCCATCCACAAATTCCGCATCAGATG TTGCCAACTCCAAGATTCTTTCCGCCCTTTCCAGTATATCTCTCCTTTTACTGATCCTGCCCATGTCACCAAATGGGTTA ATGCTGCTGTGCAACGCGGAGGACTTCAACACCTCCATCTCTGCCTCTCCTCCAAACTCGTGTATCGTGAACCACCCATC AACTTGTCTACCATCGTCATGTTCAGTTGTAAAACTCTGGTGGTTCTCAAGTTAGAGCATATCTGGTTGGAGCCAATTTC CTCTGTTGATCTACCATTACTGAAAGTCATGCATCTATATTATTTGACTTTCGCAGAACCTCGATGTCTCGCCAAGCTTC TTTCTGGATGTCCAATTCTTGAGGATTTTAAAGAATTTAAAATAAGATTTGAAGATGGTGAAGATGACACTGAGACTGAG TTTAAAACCATGCCCAAGTTGCTCAGAGCAGATATTTATAATTTTGATTCAAATATTATGCTGAAAGTGGTTAACAATGT CAAGTTTTTGCACATAGATAGGATTGAAGAGAGTCTTGTACATGACACAGAACCCTACGATTTCCCCATGTTTCACAATT TGACCCATATGCAACTTGACTATATTGATTGCAATATTGATTGGTCTGATGTAGTGGAGTTGATCAAGAATTGCCCCAAG CTTCAAGTTCTTGTCATTTACCAGCCAGAAGAAACAGCGAATTGGCAGTACCCACCATCTATATTACACCTTCAAAGATG CACCAAAGATGATGAGTTTAAATTTGCAAGGTATATAGCGGAAGATTCGAACGAAGATGACAATATGCAGTGGGATTTTT ATAAATTAACTAGTAGCCAACTAGAATTGGTAGATGAAAGTAGTTTCTACTATTCTTCATTTTTTTATACTTCCTTTTAA
Protein sequence (LotjaGi1g1v0760300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGSPSESFSYGGGTTVPESDHCCDWISTLPDAILCFILSFLPTKQVIATSVLSKRWQPLWRSVSTLDFEVGTYYNRSKE DYARLLHSVSALIQHLHHPIHKFRIRCCQLQDSFRPFQYISPFTDPAHVTKWVNAAVQRGGLQHLHLCLSSKLVYREPPI NLSTIVMFSCKTLVVLKLEHIWLEPISSVDLPLLKVMHLYYLTFAEPRCLAKLLSGCPILEDFKEFKIRFEDGEDDTETE FKTMPKLLRADIYNFDSNIMLKVVNNVKFLHIDRIEESLVHDTEPYDFPMFHNLTHMQLDYIDCNIDWSDVVELIKNCPK LQVLVIYQPEETANWQYPPSILHLQRCTKDDEFKFARYIAEDSNEDDNMQWDFYKLTSSQLELVDESSFYYSSFFYTSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 24 | 67 | 44 | 1.57E-11 | ||
| PANTHER | 25 | 365 | 341 | 1.7E-54 | – | |
| PANTHER | 25 | 365 | 341 | 1.7E-54 | – | |
| Pfam | 26 | 64 | 39 | 1.3E-6 | ||
| SUPERFAMILY | 163 | 327 | 165 | 1.41E-8 | – | |
| Pfam | 194 | 218 | 25 | 7.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0760300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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