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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0762000 |
| Transcript ID | LotjaGi1g1v0762000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G02210.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7KGD3|K7KGD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0762000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133472013..133475471) extracted from Lotus japonicus Gifu genome v1.2.
AACACATTCAACCTTTTCCTGGAAAACCTTATTCCCACCAAACCAAACTCCAAACTCCCTCCAACCCAAGGTTCTCTTTT TTCACTGAGTGTTGCATGGTGCACCCATTCAACAATGTTAGCTTCCACAAACTTATGCTCTGATTTTGATTCTGTTCTCA ACAACTCAGCAATTTATGTGTATATGAATTATCTAATAGCATGTGTTACATTGTAGATAAATGGTAATGGAGCGCCTCAG AACAATTTGGACACCTGAGATGGATCGTTATTTCATTGATCTTTTGTTGGAGCAGGTTGGCGATGATGGCAATAGGTTCC ATGATCATTTGTCCAGACAAGGTGCATGGAAACACATCTCTTCATTGTTCAATGCAAAGTTCAATTTTCAATACGAAAAA GATGTTATCAAGAACCGCTACAAAACATTGAGGAATTTGCACAGGGATGTTAGTTACATTCTTGCCCAGCCAGGGTTTAG CTGGGATGAAAAGAGGAATATGGTCTCTGCTGATAATCATGTTTGGGATGAATATCTCAAGGTATCATCAAATTTTCAAA TTACTCTAATCAATCCTCTTTACCTTGTCAAATCATTTATGGCATTAGTTTTCTCACCACCCCTTTAGAGTTTAGATATT CATACTATCCCCTTCCGCACTTTTAATTCGCGGAATGTATAATTTGTGTTCGGCACTTATAAGTGTGGTGTACAATTGGT TCCCGCACACATAAGTGCGGTAAATTTGGGTGGCGAGAAAATGAAAAGGGGTGGCATTAAAATCAATTCCCAATCATTTA TCTAATGCATAATATTTGTGCAGGTACATCCCAGTGCAAGATCTTGCAGAGTCAAAAGCATTCCCTATTTCAAAGCTTTG TGTACTATATATGGAAATGCAGTGACACAAGAAAAAGGTAACTTTTCTAATCGAAAACTTAATTTATGTAATGGTTGATG CCTAGAGGCTAGAAGGTCTAAGTTATGTTTGAATATCTTATGGATATGAATTGACAGGTGATAATGGACAAGTAGGGTCA TCTAATGTAGGTGAGGTTGCGGATGAGGTTTTTCATGATATAAAGGTGGATGAAGACTGTGGAATCTCTACCTTGGAAAA TGGCACCGGCGATTCTGAACAGGGGGCACCAAAGGCAACAGCAACCTCTTTCCGTACCCGGAATCGGACTTGTTGGCAGC CACCAATGGATCGCTACTTCATTAACCTAATGCTTGCCCATGTGCACAAAGGCAATCATGTTGATGGTGTCTTCAGCAGA CAAGCATGGATGGAGATGATTTCATCATTCAATGAAAAGTTTGGTTTTGACTATAGTTTGGAGAATCTTAAAAATCGATA CAAAACTCTGCGAAGACAGTATAATTTAATTAGAAGTCTTCTTGATTTGGATGGGTTTGTCTGGGATGAGACGCGCCAGA TGGTTACTGCTGATGATTGTGTCTGGCAAGATTATATCAAGGTATGTACCTACATAAGAAATCTTCCAGGAATTGCACTC TTCGGATTTCTATACTCAGAAGTATTGATTATATTGACAATGAGAGCTGTCTGTTTGTTTTCATCTGATTCCCCTTTTAT GATGATTTATGAAGTTTAGAGTGAATGCTGCTGGAAAATGATTTGCAAAGGGCATAGATCTTATTCTTAGTTCTTGGTAG TTGTTTATGTTCCTTAAAAAATAGTTGTGTTTGCTCATTCTCCTTTCTTCCATGCTTTTTCGCAATGTATATAGTAATGG CTTGCCAGCCTTCTTGTGCTAAGTAAAACTACTACATTTATTCTCTGCAAGGCCCAATGGTGTACTTCGTTGTAGATGCA AAGCGGAGAGGATTAAATATGTAGGTTTTAAGTTTCATCGGTGGTCGTTGGTTATGGTAGGATAGACAATAGGATCAATT AAAAAAATTATTATTCTTTACCAAGACACCCCCCCGCCCCCATGTCGTGATTATGCTTTGTGAACTATGAAGAGAGCTAG ACACTATTTATGCAAGGGGATCAGATTTCTGTATTTAGATTTTAGACCCACAATTTTGCACATGATATTGTATTTATTTC TCTCTTAATTTGACAGACTAACGTGAGAGATTTTCATATTCTATAGAGTAAAGACCATTCCAAATAATTACTGTAACATT CTGTTGGCAATGTTTCTGAGCAAAAACAAGCTTAAACAAGTTAATAGCATATTTCTATAGTGTGGTTGGACTCTTGAAAT TTCATTTTCACGTTTTTTCCTGGAATAAAAATGAATGACTATGGTTACTCGCTTCATTTTTGCTTATAGAAAAAGCATGC AATGATCTTATTTCCTAATCGTCAACTTTTCCATTTTCATCTGTACAACTACCAAACATGCCTTGGGGAATTTCAAATTT TGTGGCAATCAGTCTTCTTGATTCTTGTTTATACTAGTTAAAAATACTTGATATGATCATGCAGGTTTATTCGGATGCAC GGCAGTTTATGACGCGACCTTTACCATATTATAAAGCTCTGTGTGTCATATATGACCCGAATTTTGATGGAAAAGAATCT TATCTGGCTCAATATTTAGAGCTTCAAAATGTAGCTGATGTAACGACTGAGAGTCCATGGACTTCTAAAACTGGTCAGTC TCCTAATACATCCAATTCCAATGAAGATCAAAGGCAGTTAGCTCATATTGGACAGAAACAAAAGCGTCAATTGGAAAAGT GTCCAGATTCTACTAGTCCTAAAAAATCGAAGGATGATGAACAAGGCATGGCTATTGCCCTTCATGAGATGGCAACTGTA ATTTCTACTCTGTCTACAAATACTAACAATGATAACTCAATATCAATTGAGACTGTCATAAAAGAAGTACAAGCATTGCC TGATATGGATGAAGATCTAGTTTTGGATGCTTGCGATTTCCTGGAGGATGAAAAAAAAGCCAAAACATTTCTGGCACTGA ATGCAAAGTTAAGAAAGAAATGGTTGATTAGGAAACTTCGCACACAAGTGTAGCCTGTGCAAACTTTCAATTGATTTTTT TTTATTGGTTAGTGGTTTTTGTCCATATACTTTTACCAGGAATAGCAGATTAGCTTTTTTTTGAAGCAGATTAGGGCAAC TCATATTTGAGAATAGAATTAGTAATTTGTTGTTTGGCTAATAACTGCACAAAATGTTTATATTACAATGGAATACTCAG GTTGTCTCATCTCATGTGAATAGAAGAAGTTTGAAAACCTCCCCGGTAAAAGTTCATAATCAAAACCGATACTGTGGTAC GTCAGATTATCAAAGATCGCAGCTTTCATCAAGGTCTTGCTTTTGGGTTTGATGTGAAATCACTGGTCCTTGCCATGCTA CTCATGACTAATATTTAGAGTGTGTTTGACATGTCATTTAAGCTTCTTTATAGTTTATTTGACCTCCTTAGAGGTATTTG GTAAATAAACTCATTTCAT
CDS sequence (LotjaGi1g1v0762000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAATGGAGCGCCTCAGAACAATTTGGACACCTGAGATGGATCGTTATTTCATTGATCTTTTGTTGGAGCAGGTTGG CGATGATGGCAATAGGTTCCATGATCATTTGTCCAGACAAGGTGCATGGAAACACATCTCTTCATTGTTCAATGCAAAGT TCAATTTTCAATACGAAAAAGATGTTATCAAGAACCGCTACAAAACATTGAGGAATTTGCACAGGGATGTTAGTTACATT CTTGCCCAGCCAGGGTTTAGCTGGGATGAAAAGAGGAATATGGTCTCTGCTGATAATCATGTTTGGGATGAATATCTCAA GGTACATCCCAGTGCAAGATCTTGCAGAGTCAAAAGCATTCCCTATTTCAAAGCTTTGTGTACTATATATGGAAATGCAG TGACACAAGAAAAAGGTGATAATGGACAAGTAGGGTCATCTAATGTAGGTGAGGTTGCGGATGAGGTTTTTCATGATATA AAGGTGGATGAAGACTGTGGAATCTCTACCTTGGAAAATGGCACCGGCGATTCTGAACAGGGGGCACCAAAGGCAACAGC AACCTCTTTCCGTACCCGGAATCGGACTTGTTGGCAGCCACCAATGGATCGCTACTTCATTAACCTAATGCTTGCCCATG TGCACAAAGGCAATCATGTTGATGGTGTCTTCAGCAGACAAGCATGGATGGAGATGATTTCATCATTCAATGAAAAGTTT GGTTTTGACTATAGTTTGGAGAATCTTAAAAATCGATACAAAACTCTGCGAAGACAGTATAATTTAATTAGAAGTCTTCT TGATTTGGATGGGTTTGTCTGGGATGAGACGCGCCAGATGGTTACTGCTGATGATTGTGTCTGGCAAGATTATATCAAGG TTTATTCGGATGCACGGCAGTTTATGACGCGACCTTTACCATATTATAAAGCTCTGTGTGTCATATATGACCCGAATTTT GATGGAAAAGAATCTTATCTGGCTCAATATTTAGAGCTTCAAAATGTAGCTGATGTAACGACTGAGAGTCCATGGACTTC TAAAACTGGTCAGTCTCCTAATACATCCAATTCCAATGAAGATCAAAGGCAGTTAGCTCATATTGGACAGAAACAAAAGC GTCAATTGGAAAAGTGTCCAGATTCTACTAGTCCTAAAAAATCGAAGGATGATGAACAAGGCATGGCTATTGCCCTTCAT GAGATGGCAACTGTAATTTCTACTCTGTCTACAAATACTAACAATGATAACTCAATATCAATTGAGACTGTCATAAAAGA AGTACAAGCATTGCCTGATATGGATGAAGATCTAGTTTTGGATGCTTGCGATTTCCTGGAGGATGAAAAAAAAGCCAAAA CATTTCTGGCACTGAATGCAAAGTTAAGAAAGAAATGGTTGATTAGGAAACTTCGCACACAAGTGTAG
Protein sequence (LotjaGi1g1v0762000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMERLRTIWTPEMDRYFIDLLLEQVGDDGNRFHDHLSRQGAWKHISSLFNAKFNFQYEKDVIKNRYKTLRNLHRDVSYI LAQPGFSWDEKRNMVSADNHVWDEYLKVHPSARSCRVKSIPYFKALCTIYGNAVTQEKGDNGQVGSSNVGEVADEVFHDI KVDEDCGISTLENGTGDSEQGAPKATATSFRTRNRTCWQPPMDRYFINLMLAHVHKGNHVDGVFSRQAWMEMISSFNEKF GFDYSLENLKNRYKTLRRQYNLIRSLLDLDGFVWDETRQMVTADDCVWQDYIKVYSDARQFMTRPLPYYKALCVIYDPNF DGKESYLAQYLELQNVADVTTESPWTSKTGQSPNTSNSNEDQRQLAHIGQKQKRQLEKCPDSTSPKKSKDDEQGMAIALH EMATVISTLSTNTNNDNSISIETVIKEVQALPDMDEDLVLDACDFLEDEKKAKTFLALNAKLRKKWLIRKLRTQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 474 | 471 | 8.0E-175 | – | |
| PANTHER | 4 | 474 | 471 | 8.0E-175 | – | |
| Pfam | 10 | 105 | 96 | 4.0E-27 | ||
| Pfam | 198 | 291 | 94 | 3.0E-30 | ||
| Coils | 246 | 266 | 21 | - | – | |
| MobiDBLite | 341 | 365 | 25 | - | – | |
| MobiDBLite | 341 | 392 | 52 | - | – | |
| MobiDBLite | 366 | 392 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0762000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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