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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0763200 |
| Transcript ID | LotjaGi1g1v0763200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endoglucanase; TAIR: AT4G02290.1 glycosyl hydrolase 9B13; Swiss-Prot: sp|O81416|GUN17_ARATH Endoglucanase 17; TrEMBL-Plants: tr|I1JQN8|I1JQN8_SOYBN Endoglucanase; Found in the gene: LotjaGi1g1v0763200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133584830..133587571) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAATCTGTTACATTAAAGCCAAAAAAAAAAATGTACTGCTGTAGGATGTGGACCTAATTATTGTAACCAAACAAAGC ATAGGTGGTAAAAGATTCAGCTTTTGCTTTTATAAATAGACAAGAATTCCCCCAAAGACGAGTGAACACAGTGCAGTGCA GTAGCGTGGTTTGCAGGTGGCACTCTGGTGTTGGCTGGGTAGTGTACTTCAACATGTCTCTTTCTCTTTCTTTTTCTCTT CTTTTCCTTCTTCTCTCTGTTACAGCTTCTCTTCCCCATTCTCATTCCTTCTCAGCCCAACACCACCAACCTCACTTTGC CACCCACAACTACAGAGATGCTCTTACCAAATCCATCATCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCCTCTAACC AGAGGATGTCTTGGAGGAGGGACTCTGGTCTCTCCGATGGCTCTACCATGCATGTAATCCATCATTGCATTCAGTCGAAG ACTATGTTGTTCTTGTGTTCTGTGGCTTTTGCATTTTGCTTATTTTTGTATGGATATGCAATGCAGGTTGATTTGGTTGG AGGGTACTACGATGCAGGGGACAACATCAAGTTTGGCTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTC TTGAGTTCGGTGGGATGATGAAAGGTGAATTGCCGAATGCCAGAGAAGCGATTCGCTGGGCCACTGATTATCTTCTCAAA GCTACTGCATATCCAGACACCATTTATGTTCAGGTTAGTTTCCCTCTTCCCAATCCTCTGTTTCCTCTGTTTTCCTCTGT TTTCTTGTGTGACTCTGTTTATGACTCTGTTTTTTCATTGCAGGTAGGGGATGCTAAGAAGGACCATGCTTGTTGGGAAA GACCTGAAGACATGGACACCCCAAGAAATGCCTACAAGATAGATAGGAACAACCCTGGTTCTGATGTAGCTGGGGAAACT GCTGCAGCTCTTGCAGCTGCTTCTCTAGCTTTCAGGAGAACTGACCCAGCATACTCCAAAATATTGGTTAGGAGGGCTAT CAGGGTGAGTAGTATTTGATTTTGACAGAAAGAAAAGCAACATTGTTTACTGGAGATGTGTGAAATCTGAGATTCTACTT GTTTATGGATTCAGGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGGCTTGAAGCCCATTGTTTGCCCC TTCTATTGTTCCTACTCTGGTTATCAGGTAAAGTACTTTCATTTCCACCATTTCCACATTTGATTTTGTTCAATTTGTGG GAAGTGAACTGAAAAATGTTACCTTATTTCCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTGCACAAGGCTACTAAGAA CCCAAAGTACCTTAACTACATCAAGGTTAATGGACAGATCCTTGGAGCTGCAGAGTTTGACAACACATTTGGGTGGGATA ACAAGCATGTTGGAGCAAGGATTCTGCTTTCCAAGGTTCAAATTCCTAAACCTGTTTTCCCTTTTTTATTCTTTTACAAT GCTTGTAAATGTGGTTTCAAGCTCATATTTGTGCTTTCAATCTCAGGACTTTCTGGTTAAAAAGATGCAAACCCTTCATG ACTACAAGGGTCATGCTGACAATTTTATCTGTTCTGTTATCCCTGGAGTCTCTTCCTCTTCATACACCCCAGGTGAGGTT CATTTTTCTTCTTTCCTTCTCTTGCTTCCTTTCCTTCCATTCTCAACTTTGTTCTAATTGGCTCTTCAAATCTTTGCAGG TGGTCTTCTTTTCAAGATGAGTGACACCAACATGCAGTATGTCACATCCACCTCCTTCCTCCTCGTAACCTATGCCAAAT ACTTGACCAAAGCTCACACAGTTGTGCATTGTGGCGGAACCACCATAACTCCAAAGATGCTTCGTTCTATAGCCAAAAAA CAGGTAGAAAAACTAGATCCCTTGTGCATAAGAATTAAATGAGCGCTGGCAACTCAATCTTTAAACGACACAATTGATTT ACTTTTTGAAAAGCCTAACAGAATTAGTATGCATTTTCTTCTTGCTTAGTGATATTGATTTATCAATGTTATTACTTTGA AGGTGGATTACTTGCTAGGAGACAACCCTTTGAAGATGTCCTACATGGTGGGGTATGGTCCTAGGTTCCCACAAAGGATA CACCACAGGGGCTCATCACTGCCGTCCATTGGCGTTCACCCTGGCAAGATCCAATGCTCAGAAGGATTCAGTGTGATGAA CTCACAATCCCCAAACCCCAATGTTCTAGTGGGTGCTGTTGTTGGAGGGCCGGATCAGCATGACATGTTCCCTGATGAAC GGTCAGATTATGAGCAATCAGAGCCAGCTACTTATATCAATGCACCTCTTGTGGGAGCACTGGCTTATCTTGCACACTCA TTTGGCCAGCTCTAAAAGGAGAACAGTGTCTGCAACTTGTTTGCATCTTAATTTGTTTTTAATTATCCACTAGTTTAGTT TAGTTTAGTTTAAGCCAATGTGGCCTAGTTGTGTTCCTTGGAAATGCACACAAGGTAAGAGGGATAAGGGATAATATGGC ACAAGCCCCCACCCAACCTTGAAGAAGCCAATTGGTTAAGGCAAAATCAGTAGCCTGTACTCCATGTTTTATTTAAAGCT TTGTTAAGTGTTAATTTAACCAATCAAATGCTTTGAGCAAATTTCGTGCCAGAAATGTCATTAGTTTTACTCAGTTAGTC TCATTTTACATGAGGTTTAAGG
CDS sequence (LotjaGi1g1v0763200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTTTCTCTTTCTTTTTCTCTTCTTTTCCTTCTTCTCTCTGTTACAGCTTCTCTTCCCCATTCTCATTCCTTCTC AGCCCAACACCACCAACCTCACTTTGCCACCCACAACTACAGAGATGCTCTTACCAAATCCATCATCTTCTTTGAAGGCC AGAGGTCAGGGAAGCTCCCCTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGGTCTCTCCGATGGCTCTACCATGCAT GTTGATTTGGTTGGAGGGTACTACGATGCAGGGGACAACATCAAGTTTGGCTTTCCCATGGCCTTCACCACCACCATGCT TTCTTGGAGTGTTCTTGAGTTCGGTGGGATGATGAAAGGTGAATTGCCGAATGCCAGAGAAGCGATTCGCTGGGCCACTG ATTATCTTCTCAAAGCTACTGCATATCCAGACACCATTTATGTTCAGGTAGGGGATGCTAAGAAGGACCATGCTTGTTGG GAAAGACCTGAAGACATGGACACCCCAAGAAATGCCTACAAGATAGATAGGAACAACCCTGGTTCTGATGTAGCTGGGGA AACTGCTGCAGCTCTTGCAGCTGCTTCTCTAGCTTTCAGGAGAACTGACCCAGCATACTCCAAAATATTGGTTAGGAGGG CTATCAGGGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGGCTTGAAGCCCATTGTTTGCCCCTTCTAT TGTTCCTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTGCACAAGGCTACTAAGAACCCAAAGTACCT TAACTACATCAAGGTTAATGGACAGATCCTTGGAGCTGCAGAGTTTGACAACACATTTGGGTGGGATAACAAGCATGTTG GAGCAAGGATTCTGCTTTCCAAGGACTTTCTGGTTAAAAAGATGCAAACCCTTCATGACTACAAGGGTCATGCTGACAAT TTTATCTGTTCTGTTATCCCTGGAGTCTCTTCCTCTTCATACACCCCAGGTGGTCTTCTTTTCAAGATGAGTGACACCAA CATGCAGTATGTCACATCCACCTCCTTCCTCCTCGTAACCTATGCCAAATACTTGACCAAAGCTCACACAGTTGTGCATT GTGGCGGAACCACCATAACTCCAAAGATGCTTCGTTCTATAGCCAAAAAACAGGTGGATTACTTGCTAGGAGACAACCCT TTGAAGATGTCCTACATGGTGGGGTATGGTCCTAGGTTCCCACAAAGGATACACCACAGGGGCTCATCACTGCCGTCCAT TGGCGTTCACCCTGGCAAGATCCAATGCTCAGAAGGATTCAGTGTGATGAACTCACAATCCCCAAACCCCAATGTTCTAG TGGGTGCTGTTGTTGGAGGGCCGGATCAGCATGACATGTTCCCTGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCT ACTTATATCAATGCACCTCTTGTGGGAGCACTGGCTTATCTTGCACACTCATTTGGCCAGCTCTAA
Protein sequence (LotjaGi1g1v0763200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLSLSFSLLFLLLSVTASLPHSHSFSAQHHQPHFATHNYRDALTKSIIFFEGQRSGKLPSNQRMSWRRDSGLSDGSTMH VDLVGGYYDAGDNIKFGFPMAFTTTMLSWSVLEFGGMMKGELPNAREAIRWATDYLLKATAYPDTIYVQVGDAKKDHACW ERPEDMDTPRNAYKIDRNNPGSDVAGETAAALAAASLAFRRTDPAYSKILVRRAIRVFQFADKYRGSYSNGLKPIVCPFY CSYSGYQDELLWGAAWLHKATKNPKYLNYIKVNGQILGAAEFDNTFGWDNKHVGARILLSKDFLVKKMQTLHDYKGHADN FICSVIPGVSSSSYTPGGLLFKMSDTNMQYVTSTSFLLVTYAKYLTKAHTVVHCGGTTITPKMLRSIAKKQVDYLLGDNP LKMSYMVGYGPRFPQRIHHRGSSLPSIGVHPGKIQCSEGFSVMNSQSPNPNVLVGAVVGGPDQHDMFPDERSDYEQSEPA TYINAPLVGALAYLAHSFGQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 18 | 18 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 8 | 501 | 494 | 0.0 | – | |
| PANTHER | 8 | 501 | 494 | 0.0 | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 501 | 483 | - | – | |
| Gene3D | 35 | 501 | 467 | 4.8E-171 | ||
| SUPERFAMILY | 37 | 499 | 463 | 2.53E-159 | ||
| Pfam | 40 | 491 | 452 | 2.5E-141 | ||
| ProSitePatterns | 394 | 420 | 27 | - | ||
| ProSitePatterns | 467 | 485 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0763200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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