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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0765000 |
| Transcript ID | LotjaGi1g1v0765000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | splicing factor-like protein; TAIR: AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O22315|SR34_ARATH Serine/arginine-rich-splicing factor SR34; TrEMBL-Plants: tr|A0A151S881|A0A151S881_CAJCA Pre-mRNA-splicing factor SF2; Found in the gene: LotjaGi1g1v0765000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133745457..133749977) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTAGGCGTACGAGCAGAACCGTCTACGTTGGAAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTT CTATAAGGTAATTTCATTTTCTTTGTTTATTTGCACTTTTATCTGATAATTTGATTTGCTGGGGAAGCGGCGGATTCCTC ATTTGATGTGGGTTGGGTGTCAATGTGTGATAGTGTCGGAGATATTTGATAACCCTAATATTCTTGATAGCATCTATACC TGCATTGCTTTAGGTCTACATTAGTTAAGGTGGGTTTAAAATTTAGGTATTGCAATGCATAGTGATTGCAGTAAGATACC ATTTTACAGTCTCTTTTGGGATAGCGTAGGTCAGATGCGTTATTGATGTGCATGACTGTTAATTGTTTATTGTAGTCCGT CTACTGCGCGATTAATGTTATATTGGGTTTTTCTTTGCTGTTTCTTGATTTTGAGGTTGGTTGTTATATGCTGATAAATT TCACTTTGTGTTTGTAGTATGGAAACATAACTCATATTGACCTAAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTA GAGGTGAGTTTGCATCTACCAAGTTTGATATGAATTTCCGGCTATTTCTTTATATTTTGGTTTATCCTAATTGAGGGCAC TGTATTGCAGTTTGAAGACACTCAAGATGCTGAGGATGCAATTCGTGGGCGCGATGGTTATGATTTTGATGGTCACCGTT TACGGGTTGGTTATATTTTTAGAATTACAAGCTTTACTGTTCTGACAACTGCAATTATCCCTACCAAAAGTTGGGGGAAA AACAAGATAGCTTTAATGAATTGCTGATATTGTTTAAATTTGTATCTTTATAGGTGGAGCTTGCTCATGGTGGACGTGGT AATTCATCTTCAAGAGATCGATATAGTAGTCATAGCAGTGGTCGTGGTGGACGTGGAGTGTCCAGGCGCTCTGAATATCG TGGTGTGTAGAATTTTGGAACATTTATTAGGTTCTTTCAAGGGATGCTTTGGGTGGGTATGTGTCCTAATTCTTCATGTT TCATGCTCCCTTTTGCAGTTCTAGTCTCTGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGTGAGCTATTGTGTT CATTCTGTTCCAGTTCTATCATATAATTCCAGTTCTATCATATAATGGTTTTCTTTGCTGCAGGATCACATGCGAAAAGC AGGGGATGTATGCTTTTCCCAAGTTTTTCATGATGGCAGGGGTATGTGGCGTTCAAATAAAAATTTTGTTTCTAGTTTAA TTAAGGAGTTTTTTATGTCGATGGTTTATTTTTCCCCTCTCCATTCTCTCTTAGATCTCTCTATGCCATGCTAGCATTTG AGATAGTCTAACGTGTCTGAGATTTTTTTAAGCTTTAAACTATTTTCTCAATTATTTGATGCAGTGTGGTTGGTTTGCAG GTACTACTGGAATTGTGGATTACACCAACCATGATGATATGAAATATGCTGTGAGTTACTTCTCGACTTGCATGGTTTTA TTTATTTTGAAGTGCATGGATAACCTATTAACCTTCAAAGATCTGTGCATATCTCTAATAAATACCTACTAATTTCAACG TTGGTATTTTCTTTTTCTGCAGGTCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCCGGGGTTATGTTCGTG TATGACCTCAATTTGATATTTTAAGAGTTATATATTTTTTTCTAGTAAATGCCTACTTCTACTGACTGTTTTCCTCTTTT TCCCATGTAGGTGAGGCAATATGATTCGAGGCGGGACTCCAGAAGTCCTAGTGGTGGCCCATCTCATTCTAGAGGAAGAA GCTATAGCCGCAGCCGTAGCCGTAGTCGTAGTTATAGTCGGGGCCGAAGCGAAAGGTTTGTTCACCGTGTATTTTAGTCA TTCCTTATGTGAACATTCATTGTTGATTTTTCTTAATTAATTTTGTGTTCATACAGCAAATCTCCAAAGGGTAAATCTTC ACCGCGTTCGCCTGCTAAATCTCCAGCAAAATCTGCTTCTCGCTCAAGATCAAGGTCCCGCTCTTTATCAGGGTATGAAA TGTTCTTAATGTTTACAAATTTCTCTGATGCGTCTCTCAAAGTAAATTTTATTGATACTGTTGTTTGGAAGACCTAACAT CATTATTTTACCAAATTATTTAGAGCTTCTTAGTCTCTTTAGATTTGTGCAGGGACCAATAGGGTCAACCCTGATGAGGC ATATTAATAGATTGCGTGGGGGGACCATCTGAGTTGTCAATCCCGGGTTCCCATCCCATCCATACCCTGGGATGAATTTC CCATTCCAGCCCAGTTCACTAGCTCAACCATCTCGGCTGGGATCCTGCCCAAAATCCCGACGGGTGTAGGCCCCAGTTTT CCAAATATGCCCCCAAATTGTTCGCATTGTGGGTTTTTATTTATAGGGGTATTTTCAGGCTTTCGCAATGGAAAAACCCT AGCCTTTGGTTTTGTTAGATTTTTCCCTCTCTTCTACCCACTTTGTCCCTCTTCTCTGTTCTATCTTCGCACCTTCCCTC TCTTGTCTCTCTTGGACCCATAACTGGTTGGCGACCACCATGACAATACCTCCGGCGAGCATCACCTCTGTTCTACCCAC TTTGACCCCCTTCTCTCTGCTCTATCCTGTAGTTATCATTGATTTAGTATGTGTATGTATGGTATAAATTGTACAAAATA TAGGCAAAAATTCACTATCCTGGCCATCCTGCTTTCCAGGATCCCGCTATCCCAGTGTTTAGGCTGGCCGCGCTGAGCTT GAAACTGGGATTGACAACATAGGGGACCATAGAGAATTGAGTATTGAAATGAACAAAACATAAGTAGTTTGAGTTCCGTG TCACGAATCAGTTGAATCCATGCATATCAAGTCCTCCTTAAGTTAGGATGAACAACTTTTGTTTCAATTGCTTTGTCCTA GTGAAGTCAGTTGTCCGCACCATGTGTGTGTTTGTGTGTGTTCCTTTTTTGTGTTGTTAAGCATCCTAATGAAACTTGTT TTGTTCAAAACCCTTCTTTTTCTGAAAGTGAAAGTCACGCAGAAACTTGTTTGTGAATGAATTGTTATTTATCACTTTTT CTCAATGAACTTCAGATTTAGTCATTTTTTTCCTAACACACTTGCTCTCTTCTCAGTCCCTTGTCAGTTTTTCCCCTTCA TGCATGTTCACGTGCTACCCGGACAAACATGCCTCCTTGTCGGAGTGTTCGCTTTGAGTTTCCTTTTGTTTTTGTGAAAA TTCCTTGTTTGTTTTTTCTTAGATATGGAAACTTGCGGCATACTGGATATTGGAATTTAGGATCTTGGTGGGATTTGTTC AATTGCCTGCAACTCAATTTGTTGTAGAGGTATGATATTTTTTAGATGGGCGACTTTGGATACCCTCCCAGTACATCTGT TCTAATACTTTTAGCATGTAAATGTCCATGGGTGCTAGATGGGGAATCAAGGAGATCATGGGATTGCCATTTTAGAGCTG GATTTCTTGTGTATAAAGTCAATTGGGATTTGGAAACCACCACCAATGAGGAATAGGAACAATTTCATTACAATTGTCGG CTTCAAGATTACCCAAGCCTGTAGGGTGCACTATCTGGATTCTTTGGATTTTGTGGTGCTGTGGAAGATTTATTTTCTCC AAGCCACTGGTGTATTAAAATATACCCTGTGATGGTTCTATTTACTTTTTTCATTTTCCATGATATTATTTTGCATTATT ATCTACAATTTGTCCTTTTTAGATCTCTCTCTGTTGGGCTGTTTTATATTTTGAGATGTTTGCTTTTACCTCTCTTGGAC ATGTTTACTGTGACATGGGAGAGGCATCAAGGCTATTGGATCAAATTTGATGAGGGAACATGTGGATCTTAAATTCTGTT GTTTGTGGAACTTTTGCAGATCACGGTCAAGGTCCAAGTCTCCATTGCCATTGGTGAGTGAATTTCTTAACTTAAATTGA ACATGTGTTTGCCTTCTGTTCCTACTCGTCTTGGCTGAATTTGATGTCGTGATTTGCATCATTGCATGTTGAGCTTGGGT TTGTATGTGAAATCTCATTTTTCTCGGTGAATCCTCATGTTTTTTAAGTGTTTTTTTTGTGGTTTGAATATTGTACATGG TGTTAGAAAGCATAATTTGCAATTTCAAGTTGAGTTTTGGTAGACTGCCTTCTTTTCCCTCCTTAATTAATGGTTTTCTT TGACAGCGTAACAAAAGCCCCAAGAGGTGCAGTGCAAGCCCCATAAGACGCAGTGCTAGCCCCAAAAGACGCAGTCCTAG CCCCAAAAGGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTTTGTCCAGGTCTTTATCTTAAA TTCTTTTGTTTCTCCTGGATTATTTTTCAGTGCATTTGTTGACTTCCTCAAGTTTAATTTTGTTTGTGTGTTGGATTCAT GCTCAACTTTTGGATTTGATTGACCATGGTCTGGCAGGTGA
CDS sequence (LotjaGi1g1v0765000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGGCGTACGAGCAGAACCGTCTACGTTGGAAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTT CTATAAGTATGGAAACATAACTCATATTGACCTAAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTAGAGTTTGAAG ACACTCAAGATGCTGAGGATGCAATTCGTGGGCGCGATGGTTATGATTTTGATGGTCACCGTTTACGGGTGGAGCTTGCT CATGGTGGACGTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCATAGCAGTGGTCGTGGTGGACGTGGAGTGTCCAG GCGCTCTGAATATCGTGTTCTAGTCTCTGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAG CAGGGGATGTATGCTTTTCCCAAGTTTTTCATGATGGCAGGGGTACTACTGGAATTGTGGATTACACCAACCATGATGAT ATGAAATATGCTGTCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCCGGGGTTATGTTCGTGTGAGGCAATA TGATTCGAGGCGGGACTCCAGAAGTCCTAGTGGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCC GTAGTCGTAGTTATAGTCGGGGCCGAAGCGAAAGGTTTGTTCACCGTCAAATCTCCAAAGGGTAA
Protein sequence (LotjaGi1g1v0765000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGYDFDGHRLRVELA HGGRGNSSSRDRYSSHSSGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDD MKYAVKKLDDSEFRNAFSRGYVRVRQYDSRRDSRSPSGGPSHSRGRSYSRSRSRSRSYSRGRSERFVHRQISKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 93 | 93 | 1.0E-26 | ||
| PANTHER | 1 | 223 | 223 | 1.7E-125 | – | |
| PANTHER | 1 | 223 | 223 | 1.7E-125 | – | |
| SUPERFAMILY | 5 | 176 | 172 | 1.02E-36 | ||
| ProSiteProfiles | 7 | 82 | 76 | 18.7 | ||
| SMART | 8 | 78 | 71 | 5.0E-23 | ||
| CDD | 8 | 79 | 72 | 2.07202E-46 | – | |
| Pfam | 9 | 76 | 68 | 5.8E-18 | ||
| MobiDBLite | 79 | 108 | 30 | - | – | |
| MobiDBLite | 87 | 102 | 16 | - | – | |
| Gene3D | 110 | 188 | 79 | 2.0E-21 | ||
| ProSiteProfiles | 111 | 189 | 79 | 9.388 | ||
| CDD | 111 | 186 | 76 | 2.89767E-45 | – | |
| SMART | 112 | 185 | 74 | 6.6E-7 | ||
| Pfam | 113 | 175 | 63 | 1.8E-10 | ||
| MobiDBLite | 186 | 234 | 49 | - | – | |
| MobiDBLite | 217 | 234 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0765000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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