Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0766900 |
| Transcript ID | LotjaGi1g1v0766900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G14103.2 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0766900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133963393..133967208) extracted from Lotus japonicus Gifu genome v1.2.
CACTTACACCTCTGACTCCTGTGAATCATAAACTGATCCAGGTTTTGAGCGAAGGTTCGAACAGGACATGACAAAGGGTC ACTGTTGCGATTGGATTAGCACCTTACCAGACTCAATCCTCTGTTTCATCCTCTCTTTTCTCTCAACCAAGCAAGCCGCT GCCACCAGCGTCCTCTCCAAGCGGTGGCAGCCACTGTGGCGTTCAGTCCCCACTCTCGACTTGGATGACTCCATCTACTA TGACAGAGCCAAACAGGGTCATGCTCGTCTTGTTCAGCCTGTTTCTGCACTCGTTCATCTTCACCATCCCATCTACAAAT TTCGCCTCAGGTGTATCTCTCCTTTCACTGATCCTGCAAATATCACCACATGGGTCAACGCTGTTGTGCAACGCGGAGGA CTTCAACACCTTGATCTCTCCATCGATCGCAAGTATCGGGAACCACACATCAACTTGTCTTCCATTTTCAGTTGCAAAAC TCTGGTGGTTCTCAAGTTGAGGGGTAGCAAGATCACCAAGTTGGAACCTATTTCCTCTGTTTACTTACCCTCCCTTCAAG TTCTCCATCTACAAGGTTTGACTTTCTCAGAATTTGGTTGTCTGGCCAAGCTTCTTTATGGATGCCCAGTTCTTAAGGAC TTTAAAGAAAGTCATTTATTGTTTGAAAATGATTTCTTGATTGATGAAGATATTGTCACTGACATAGAATTTAAAGCCTT GCCCAAGTTGCTGAAAGCAGATATTTCTGATTTCCATACAAAGATTATGTTGGAAGTGGTTAATAATGTCAAGTTTTTGC ACATAGATGAGGTATAATGTGATTTAATTTATGAATCATTATTTTTTTCTTTACTAAGTGAAATGTGATATTAGATTTCT TGTTCTTGTAACTCATGCAGATTGATGGTATTCTTGTTGAAGGCACAAGCCCCTACATTTTCCCCATGTTTCACAATTTG ACCCACATTGAACTTGAATATAGCTATTACTATTATAATAATGATTGGTCTGAGGTAGTGGAATTGCTCAAGTCTTGCCC CATGCTTCAAGTTCTTGTCATTTACCAGGTTTGATTAAAAGGAATAGAATGATTGCTAGTGTTTATCACTTCTTCATTTC ATTTATTTATTTTGTGTTTATTGTTAACAGCCATATTTTGATGACCATGTGTCTGATCTACCTCAAGAAACAGTATACCC ACCATCTATGTTACATCTTAAAAGATGCACCGAAGAAAGATTTAAATTTGCAAGGTATATAACAGAAGATTCTAAAGAAG ATGACAATATGCAGTGGCATTGGGGAAGGCTTGAGCCTGTGGTATCTGAACTCAAATGAGCCTGCAGGTTTTCTATCTTC TTTAAGTTTACCTGAAATATGTGTTTTCTATGTGCATGTTTGCTGAGGGAGAACCTAGATCTGCCTCTCTTGAGCTTTTG GTAAAGGGAGTCAAATCAAAGTGTTATGTGCAAAAGCAGTGGACATGAACTGTTTAGTTTATCACTCTATGTAGTCTGGT ACATACTGGAGTATTTATAGATGAACAACATTACATTCTCATATAAAAAAGCAATTTAATCAGTTCTGTTCTTTATGTAT GTTGAATGGCTATGCTCTGTAATTTTTAGCTGTAATTTAGTCCATTGTTAACTAACTATGAACTTAAGTACATTTTGCAT GTATTGTATCCTTGGATCCAGAGCTTGTATGTTATGCAGACATATTGTGTTTTCCTTTAAGTTTAAGCAATAAGAATAAT TGTTTTTCTTTTAAGTTTAAGCAAACAGAATAAGAGTCTTCTTAAACCTGATGCAGGTAAAATCTCTTTCACAACCACAC TTTCTATTTCTAATACCAATATCATGAATTCTAACTAATTTATAATCATTAAAATACTTATTCTGCGAATAATATTTTTT ATATATTACAATTTAATTCAACTGTGGTACACAGATTACTAATTAATTAGTAATAACATAATGACAGTAGCATTCAATAA TACATGTATAAACATATTAATTATCATATTCCTGGTTTAATTAGGCCAAGAATTGTAAATTCAGCTTCAAGGATGCAACT ATCACCCAACAAAAGCCCATTCTTCAGATCTCTAACTTTAGCCAAGGCCACAAGCCGTCTTGAACCCCACACGGAAGCCG ACTCCGAGAACTTTCGACAGACTACAATAGAGAAAAATGTGAGATATTATAAGTGATGTGAAGAAAAAGAAAAAGGAAGT GAGTAAAAATGAAATGAAATAAAAAAGTATAGGTCAAAGTTGTTTATATATTTACATTCACATGGCCTTACATTTTTGTA TAGCATGTTGCTCTCTGAGTTGGTCTTTTGCGCGCAGGATGCAATCGACAACAAGCTTGGTGTTGGGTGGGAGAGTTGAC ACATCCAAAACTAAAAATAGTGACATACTATTACCCTTTCCCTCAACTATTCCATTGGGGTATAAAACGAGTTTCCTGAG GAAAAAAAAACAACAACTTAGCCAAAGAACAATGTTGAAACGAAACTACTCCACACAATTGATTTTGAGTTTAGAATAAA GGATTAGATGATAAGGAAGTTAGAAGCGTTTGTGTATGCATATATACCATTTGTAGTCTCCCCCAAAAAATGATTCAGAC TCGTGCTTTTCTATTGATTGGGAAAATTTGAATTTCCAGCTATGGGAAACAGTCACAGGTCCATGTAACATTGATAAGCA ATCGCCTTTATGTGTGTTCTTGACAACGAAAACCTCAGCTCCAAAAACACAAGTATCATCAATCAGATATCCTTTTGAAG GGTCATTAAATGTGCCCAGGTCCATGAATTTGGGGACCCCCCACTCAGTTTTCAGGGCATGGAAACGCCTTAGACTTGTA TCTGCATCATTTCAACTTGTTAAATTTTTTACCATACTCTTCCTGTAATTATTAGAAGTCACCAGCATATAGCACAATTA AAGAATGAAAAGCTAAAACAAAGAAATTAATTAATGATGCTTGATTACTGGTTAAGTAGTTGTTAGCTTTAAATGTTGGC GAATTAGTAATTTACTCATCAATTCATAATGTACCTTGAGTTGTAACATACTCATCATCAAGAAAATTGTATGCAGAAAA ATTGACTATGGCTTTGACTTCCCAATCAACAGGTAATGAGCTTGTGTCCATAAGCACCAAATAAATAGAAACATGACCTT CTCCTTCTCCTTTTGTGTTCCCTGTTGGATAAATAGATAGGCTCCTGCGCGGCGGGCACATCGATCCATTGATGATATCA GATTGAATGTATACAACAGAGACGGAATCATAAAAAATGGATAGGAGGAGCAAGAATTTAACACATTAAGAAAAATTAAC AATGTGTAAAAGCACATGCATACCATTTGTAACCCCCTGCTTCAAATTCTTCGGAAGCACATTTTTCTACTGAGAACTTG GAAAGCATTGAGAAGGACTCAATTCTGAATGTGTAATGAATTGGCCGAGTTTCTCTTCCTGTAAAAGACATTATACCACT AAATAAGAATAATTGAACCCAAACTAAACATATTGGTAATTTTAATTAACTCCCAATGGAGTAATTTTAATTAACTCTTG CAAAAACAAAAGCCAATGATAAATAATGTTTTCAAAAGAGCATTTGCTAGATTCATTTATCCGTTGATTGATGCCCCATA TTCTTTGAAATAGAAAGGCACAAAAGTATGAGTATGACTATGACACCTTTCATGGGTGTTGTAGACAACATTGACTTAGC AGTTTTGGTTTCCATGATTGATGAATGCAGGCACAGTGAAGGACTATATATTTTTT
CDS sequence (LotjaGi1g1v0766900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAAGGGTCACTGTTGCGATTGGATTAGCACCTTACCAGACTCAATCCTCTGTTTCATCCTCTCTTTTCTCTCAAC CAAGCAAGCCGCTGCCACCAGCGTCCTCTCCAAGCGGTGGCAGCCACTGTGGCGTTCAGTCCCCACTCTCGACTTGGATG ACTCCATCTACTATGACAGAGCCAAACAGGGTCATGCTCGTCTTGTTCAGCCTGTTTCTGCACTCGTTCATCTTCACCAT CCCATCTACAAATTTCGCCTCAGGTGTATCTCTCCTTTCACTGATCCTGCAAATATCACCACATGGGTCAACGCTGTTGT GCAACGCGGAGGACTTCAACACCTTGATCTCTCCATCGATCGCAAGTATCGGGAACCACACATCAACTTGTCTTCCATTT TCAGTTGCAAAACTCTGGTGGTTCTCAAGTTGAGGGGTAGCAAGATCACCAAGTTGGAACCTATTTCCTCTGTTTACTTA CCCTCCCTTCAAGTTCTCCATCTACAAGGTTTGACTTTCTCAGAATTTGGTTGTCTGGCCAAGCTTCTTTATGGATGCCC AGTTCTTAAGGACTTTAAAGAAAGTCATTTATTGTTTGAAAATGATTTCTTGATTGATGAAGATATTGTCACTGACATAG AATTTAAAGCCTTGCCCAAGTTGCTGAAAGCAGATATTTCTGATTTCCATACAAAGATTATGTTGGAAGTGGTTAATAAT GTCAAGTTTTTGCACATAGATGAGATTGATGGTATTCTTGTTGAAGGCACAAGCCCCTACATTTTCCCCATGTTTCACAA TTTGACCCACATTGAACTTGAATATAGCTATTACTATTATAATAATGATTGGTCTGAGGTAGTGGAATTGCTCAAGTCTT GCCCCATGCTTCAAGTTCTTGTCATTTACCAGCCATATTTTGATGACCATGTGTCTGATCTACCTCAAGAAACAGTATAC CCACCATCTATGTTACATCTTAAAAGATGCACCGAAGAAAGATTTAAATTTGCAAGGTATATAACAGAAGATTCTAAAGA AGATGACAATATGCAGTGGCATTGGGGAAGGCTTGAGCCTGTGGTATCTGAACTCAAATGA
Protein sequence (LotjaGi1g1v0766900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKGHCCDWISTLPDSILCFILSFLSTKQAAATSVLSKRWQPLWRSVPTLDLDDSIYYDRAKQGHARLVQPVSALVHLHH PIYKFRLRCISPFTDPANITTWVNAVVQRGGLQHLDLSIDRKYREPHINLSSIFSCKTLVVLKLRGSKITKLEPISSVYL PSLQVLHLQGLTFSEFGCLAKLLYGCPVLKDFKESHLLFENDFLIDEDIVTDIEFKALPKLLKADISDFHTKIMLEVVNN VKFLHIDEIDGILVEGTSPYIFPMFHNLTHIELEYSYYYYNNDWSEVVELLKSCPMLQVLVIYQPYFDDHVSDLPQETVY PPSMLHLKRCTEERFKFARYITEDSKEDDNMQWHWGRLEPVVSELK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 56 | 50 | 3.01E-12 | ||
| PANTHER | 8 | 348 | 341 | 4.8E-58 | – | |
| PANTHER | 8 | 348 | 341 | 4.8E-58 | – | |
| Pfam | 9 | 46 | 38 | 2.2E-4 | ||
| Gene3D | 9 | 354 | 346 | 3.1E-28 | ||
| SUPERFAMILY | 109 | 309 | 201 | 1.1E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0766900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…