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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0766900 |
| Transcript ID | LotjaGi1g1v0766900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G14103.2 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0766900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133965524..133967174) extracted from Lotus japonicus Gifu genome v1.2.
GATCCAGGTTTTGAGCGAAGGTTCGAACAGGACATGACAAAGGGTCACTGTTGCGATTGGATTAGCACCTTACCAGACTC AATCCTCTGTTTCATCCTCTCTTTTCTCTCAACCAAGCAAGCCGCTGCCACCAGCGTCCTCTCCAAGCGGTGGCAGCCAC TGTGGCGTTCAGTCCCCACTCTCGACTTGGATGACTCCATCTACTATGACAGAGCCAAACAGGGTCATGCTCGTCTTGTT CAGCCTGTTTCTGCACTCGTTCATCTTCACCATCCCATCTACAAATTTCGCCTCAGGTGTATCTCTCCTTTCACTGATCC TGCAAATATCACCACATGGGTCAACGCTGTTGTGCAACGCGGAGGACTTCAACACCTTGATCTCTCCATCGATCGCAAGT ATCGGGAACCACACATCAACTTGTCTTCCATTTTCAGTTGCAAAACTCTGGTGGTTCTCAAGTTGAGGGGTAGCAAGATC ACCAAGTTGGAACCTATTTCCTCTGTTTACTTACCCTCCCTTCAAGTTCTCCATCTACAAGGTTTGACTTTCTCAGAATT TGGTTGTCTGGCCAAGCTTCTTTATGGATGCCCAGTTCTTAAGGACTTTAAAGAAAGTCATTTATTGTTTGAAAATGATT TCTTGATTGATGAAGATATTGTCACTGACATAGAATTTAAAGCCTTGCCCAAGTTGCTGAAAGCAGATATTTCTGATTTC CATACAAAGATTATGTTGGAAGTGGTTAATAATGTCAAGTTTTTGCACATAGATGAGGTATAATGTGATTTAATTTATGA ATCATTATTTTTTTCTTTACTAAGTGAAATGTGATATTAGATTTCTTGTTCTTGTAACTCATGCAGATTGATGGTATTCT TGTTGAAGGCACAAGCCCCTACATTTTCCCCATGTTTCACAATTTGACCCACATTGAACTTGAATATAGCTATTACTATT ATAATAATGATTGGTCTGAGGTAGTGGAATTGCTCAAGTCTTGCCCCATGCTTCAAGTTCTTGTCATTTACCAGGTTTGA TTAAAAGGAATAGAATGATTGCTAGTGTTTATCACTTCTTCATTTCATTTATTTATTTTGTGTTTATTGTTAACAGCCAT ATTTTGATGACCATGTGTCTGATCTACCTCAAGAAACAGTATACCCACCATCTATGTTACATCTTAAAAGATGCACCGAA GAAAGATTTAAATTTGCAAGGTATATAACAGAAGATTCTAAAGAAGATGACAATATGCAGTGGCATTGGGGAAGGCTTGA GCCTGTGGTATCTGAACTCAAATGAGCCTGCAGGTTTTCTATCTTCTTTAAGTTTACCTGAAATATGTGTTTTCTATGTG CATGTTTGCTGAGGGAGAACCTAGATCTGCCTCTCTTGAGCTTTTGGTAAAGGGAGTCAAATCAAAGTGTTATGTGCAAA AGCAGTGGACATGAACTGTTTAGTTTATCACTCTATGTAGTCTGGTACATACTGGAGTATTTATAGATGAACAACATTAC ATTCTCATATAAAAAAGCAATTTAATCAGTTCTGTTCTTTATGTATGTTGAATGGCTATGCTCTGTAATTTTTAGCTGTA ATTTAGTCCATTGTTAACTAACTATGAACTTAAGTACATTTTGCATGTATT
CDS sequence (LotjaGi1g1v0766900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAAGGGTCACTGTTGCGATTGGATTAGCACCTTACCAGACTCAATCCTCTGTTTCATCCTCTCTTTTCTCTCAAC CAAGCAAGCCGCTGCCACCAGCGTCCTCTCCAAGCGGTGGCAGCCACTGTGGCGTTCAGTCCCCACTCTCGACTTGGATG ACTCCATCTACTATGACAGAGCCAAACAGGGTCATGCTCGTCTTGTTCAGCCTGTTTCTGCACTCGTTCATCTTCACCAT CCCATCTACAAATTTCGCCTCAGGTGTATCTCTCCTTTCACTGATCCTGCAAATATCACCACATGGGTCAACGCTGTTGT GCAACGCGGAGGACTTCAACACCTTGATCTCTCCATCGATCGCAAGTATCGGGAACCACACATCAACTTGTCTTCCATTT TCAGTTGCAAAACTCTGGTGGTTCTCAAGTTGAGGGGTAGCAAGATCACCAAGTTGGAACCTATTTCCTCTGTTTACTTA CCCTCCCTTCAAGTTCTCCATCTACAAGGTTTGACTTTCTCAGAATTTGGTTGTCTGGCCAAGCTTCTTTATGGATGCCC AGTTCTTAAGGACTTTAAAGAAAGTCATTTATTGTTTGAAAATGATTTCTTGATTGATGAAGATATTGTCACTGACATAG AATTTAAAGCCTTGCCCAAGTTGCTGAAAGCAGATATTTCTGATTTCCATACAAAGATTATGTTGGAAGTGGTTAATAAT GTCAAGTTTTTGCACATAGATGAGATTGATGGTATTCTTGTTGAAGGCACAAGCCCCTACATTTTCCCCATGTTTCACAA TTTGACCCACATTGAACTTGAATATAGCTATTACTATTATAATAATGATTGGTCTGAGGTAGTGGAATTGCTCAAGTCTT GCCCCATGCTTCAAGTTCTTGTCATTTACCAGGTTTGA
Protein sequence (LotjaGi1g1v0766900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKGHCCDWISTLPDSILCFILSFLSTKQAAATSVLSKRWQPLWRSVPTLDLDDSIYYDRAKQGHARLVQPVSALVHLHH PIYKFRLRCISPFTDPANITTWVNAVVQRGGLQHLDLSIDRKYREPHINLSSIFSCKTLVVLKLRGSKITKLEPISSVYL PSLQVLHLQGLTFSEFGCLAKLLYGCPVLKDFKESHLLFENDFLIDEDIVTDIEFKALPKLLKADISDFHTKIMLEVVNN VKFLHIDEIDGILVEGTSPYIFPMFHNLTHIELEYSYYYYNNDWSEVVELLKSCPMLQVLVIYQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 302 | 296 | 5.6E-56 | – | |
| PANTHER | 7 | 302 | 296 | 5.6E-56 | – | |
| SUPERFAMILY | 7 | 56 | 50 | 2.09E-12 | ||
| Pfam | 9 | 46 | 38 | 1.7E-4 | ||
| Gene3D | 9 | 305 | 297 | 1.1E-27 | ||
| SUPERFAMILY | 109 | 302 | 194 | 1.8E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0766900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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