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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0767700 |
| Transcript ID | LotjaGi1g1v0767700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein L19; TAIR: AT3G16780.1 Ribosomal protein L19e family protein; Swiss-Prot: sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2; TrEMBL-Plants: tr|I3SXM3|I3SXM3_LOTJA Ribosomal protein L19; Found in the gene: LotjaGi1g1v0767700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134050863..134058964) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGTCGGTCAGCTGTAAGATACCTTTGGAGACAAAAAATGCATAAATCAATGTAAAACAAACCTACTAATAAAAAA AACACGACAAGACATTATTGAATATTAATGCAAAATTCGTGAGTTCAATTTTAAAAAAAAAAAAAAAATTAAGCCTGGAT AACAGTGGGTTTTGAAACAGAGTGAGTTAGGCCCAGCCCAATAAAGAGGGGTTTGGAAGATTCATTGATATAGATAGCAA AAAATTAGGGTTTAGCTCCTCCCTTTCAGAATTGTATCAGCAGCAGCAGGGAAAATGGTGTCCCTGAAACTGCAGAAGCG GCTTGCAGCCAGCGTGCTCAAATGCGGAAGAGGGAAGGTTTGGCTTGATCCCAATGAATGCAATGAAATCTCCATGGCCA ATTCTCGTAAGCTCTCTCTCTCTTTCTTCTCACTTTTACCCAATTTTTTTTGTTTTCAACGAACGTGTTTATACCCATTT GCTTACTGAAAGATCCATCACCATTTGGTAATATTATTCCGCTCTAGGTGTTCCATTCGATCGAAATCTGATTGCTTTTT CTTCTTTGATGCTCTGTTATGTTAGATTTCTATAGACTCAGTAGCTTTTCTTAACTTAGTTTTTCCCAGAACCACAAAAT AGCAAAGCTTTTCAACTATTGATCCATCGGCTGGCGCTTTAGCTTTAAGTTCTTGTGGAATGAATGCTCAAATCTTTTTA CTATTGAAGCATTACTTAGATTGGTGGATTTTTGTTTACAGGCCAGAACATTAGGAAATTGGTTAAGGATGGATTTATTA TCAGGAAGCCCACCAAGATTCATTCCCGGTCACGAGCTCGCAGGATGAAGGAGGCTAAGAGGAAGGGTCGCCACTCTGGA TATGGTATTTATTCCCAACTTTAACCGGGTTACTTCATAGTTAATCTCAACCCATGATTTGTTAATTTGTTGGTGGAGTG TAGTTTCAGGCAGTTTGCCGTTGATGCATGTTTAGGAACTATTTTCATGGGCATTTTTTTATCATTTAGACATTTACTCA TTGGAAATTGACTAGGTTCTACCTGATTTGTTTACCATTTGAAACAATAGCGTAATAATTCTTTGCTATATAGTTTAGGG GATTAGTTTATGGATACTACATGTCTGCAAGGGGTAGCCATATAATGAATGGCGATTGTCATCTAATTGTAATGTTATAA CCTTTAAATACTAATAGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTTCCCACCAAAATACTTTGGATGAGGAGGATGC GTGTGCTCAGAAGATTGCTCCGTAAGTACAGGGAGTCCAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAG GTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCTTAATGGAAAGCATTCACAAGTCGAAGGCTGAGAAGGCCAGAGAGAA GACTCTGTCTGATCAGTTTGAGGCGAAGCGTGCCAAGAACAAGGCAAGCAGGGAAAGGAAGCTTGCTAGGAGGGAGGAGC GCTTGGCCCAGGTGATTTCCTTAGTGTATTGAGAATCTATTTAATTACGGATTTCATGAATTTATATATTCTTAATATTT GAACTTGGGATCTTCTGTCTACCATAAATATGTTCACTGACACTTCTTTTCTCTGAAATGTTTAGGGTCCTGGCGATAAA CCATCAGCAACACCCAGTGCTGAACCTGCTCCAGCACCTAAAGCTGCCCAGTGAGTATAACATATTGGTCTTAAGCCTTA TTTACAGCTTTTGGCCTTGTTACATGTACCATGGTCTAAATGTTATTCTTTTATGCAGAGCACCAAAGAAATCCAAGAAG TGAGCAGCATTCTCAGGGATTCAAAGGATATTGATTCGGTTAAAGTAGTCTTGACGAATCTCTTGACTCTGCTTTGTTGA TTTAGACCTTTTAAGATTATAAGTATAATAACTTTATTTTTGGACGCTTTATATGACATATTTTGTTTGATGGTGCTTTC CTCTCATTGGTATCAAGATTAACCAAGTTGCGAAACTTGGTCCTTTTATTTATGGCACGTTTCATCCCTTCCTAAGTAAA TTCAATTACGTACAACTATAATTAGATCTGCCCCACATTTTCTTGGTAATTCTACGAGATGATGAGTTCAAAAGAATTCT ACGAGATGATAATCACGAGGGAACTATATTCATTATATCCTTTTATGTAGATGAGGGACTCTTGGTAATTTATCTCTAAG GTTGTTCATGATGGGGTTGGTATGATTTGAAATTGAAGGAAACTGTGGCTTCTTTTGTGCAGGCAAATGGGTCAGGCTAG ATGTGGGGTGCAGCCTGACGGGTTAGGTCTGATGGCGGGTTTGGCAGATGGTTAAAGTCAGTTTAATGTGGTTTGGTTTG GTCGGTTTTGGTTTGGACTCCTTTCTGACCGAATTGACTGAATAACAATAGAAAAAAAATGAATATCCCATTTCCTAAAG TGAGTGCAAGACCAAATAAACCTAGCTTCTCCTCTTTCTCATTCACCATAAAAAAAAAAACCCAAGCCTGTCCTCTCTAA CTTCTCAATGCCGCCTCTTCATTTCTCCCTCTCACTTCACTTCCTTTCCCGCTTCTTGGCAAATCTTAGAGCTGCCACCA CCGGTCCATGTCTCTTCTCTCCCTAGCTGCAGTGCCATCATCTCTCCCTCTCTCACTTCACTTCCATTACCACTTCCTAC CAAACCCTAGAGCTACCACAACTGGTCCATGCCTCTGCTCTCCCCAGTGGGCTTGCAATGCCACCATCTCTCCCTCTTCT CTCACTTCACTTCCCTTACCACTTCCTAGCAAACCCTAGAGCTGCCACCATCGATCCATGTCTCTTCTCTCCCTAGCCAT TGCACACCCTAGTTGTAGTGCCATCATCCATGTCCCTTCTTTTCTGTTGTCTTCAATGTAACATCAACAACTCAACGATG CCCACCGCCTTCACCAGTAACATTGTCATTACTCTTTCACCATTAATGTTGTCATCGCCCTTTCTCTCTCCCTGTCGCAA ATCTTTGGAAGCTTCATCTCCTCATCCACATCTCCTCAAAAGCTTACTCCTTTATCTTAGCTAAGGAGTTGAAGTTGGAA ATCAGAAGAGGAGTCAATCTCGTCACGACGGTGAGGATCTCGTCATGGCGGATGCAATTTTGGTTATGGGTTCCTCTATG GTTTTGGATTCATCTATGGTTCAAGGTTCCAACATCCAATTGAGTTATTTCTATTGATTTCCTATTTTTGTTGAGGTTCC CTCTCTGATTTTGTGACTTCATTGTTCATCTTTTTGTATTGCAATATGAAATCTTAGTGAAAATTTTGAGTCTTTCTTTT CTTCTCCTTTCTCTTCTATTTAAGTAGGGCCGTCCTTCAATCAACTACGATCTTTGTATGGTCATTCATGTATACAGCAT ATCTGTTTAACTTACATAAGTTGAACATATAATCGCAAATTGAAAGTTACAATTACAAAGATGTGAAACTATTTAAATTA ATCTTATATTTAATAAATTATTTAAACCTGTGCCATGAGAAGCCTATCTACCAATCCCTATTTTATTTGATACAGAGTAC AGACATCCGAACTAATAAACAAGCTGTGTAGATGACGAGGGGGATTTCAGTAGCATCCAACCAATGACTTATGTCGACGA AGACGAGGATGTTTTAGAAAGCAGAGCTTGAAGTGCAGAATGATTAGTCACAGGGGGGCTACAAGTGAAGTGTTGGCATA CAAGAGCTACAACCTTGTTGATTGAATAGTTATTCTTTGCCATGAGAGCAATGTTGCTGTTATTTACTTCCCAAAACTCC ATCTCTTCTTTGTTGTTGGGATCTATATGAATAACCTATAATCAAACACCAGAACAAGTGTTATTGATGATAAATGGGAA AAAAATGGAGGTATCAACTTTAATAAGAGGAAACTATGCTCACTGTTCTGTTGGGATCATATAATGCATGAGCTGTAGCA AGCATGCTTTCAAATTCCTCACAAGTCCTTTCACCAACCACCACCACTTGCTTGGGGGAAGGTACACGCAGCATGTCAGC TGCACAACACATCAGAGGCACTGCCATAGCCGTATCTTTCAATCTTTTCTCAAAAACAGCCTGCATTATATTAATAGAAT CTGGTCATTTGCAACTGTTCCATTAACAGAGATACACACTAAGAATCAATCCCATCATATGAAAAAGAACAACGAAAGGT TTTTTAGGAGGAAATGGGGGAGGGTTTACAAACCAATAAATGTTCTGCATTTCGTTTATATTGCTCTGCCTTACTTCCAG AAACCATGGAAGCCAATCTTGTAAGATTTATCACAGAAACTGAGTTCCCAGAAGGTTCTGCCCCATCATGGTCTTCCTTC ACACGGAGAAGAACTGAAGCATCTTCTCCAGTATTATTGAAATAACCACCTCCATCTTTATCAAGAAACAGAGCATCCTG CATGCAGCTTATCTCATTAACAACTGAAGGCCTGGTAAAACAAGCAAATGAAAATTCTATTTGAGACCAGACATCAATCT TTACCTGGGTTTCCTGCAATTCAACGGCCCATTGAAGCCAGTTGATTCCACCACCAAACTCATAGAGATCTAGTAATCCA CAAATCAGAAATGCATAATCATCCAAGAAACCAGGAGCTTTAGATGGAGAATTTCTGAAACTATGATGTAGCCTGTGAGT CTCCGCATCATAAAGTTGCTTCCTGATAAAGAATGCTGCTTTTTCTGCAACTCTCATGTATTCCCTTGGCTAGAAATTGC ACCATAAAAAAGGAGGAGAGAGTCATATACATTACTCGAGAAAAGAATCTTGTTGGCTACATGTGTTTCTCTAACAAAAT AACCATCATTCCTTCTTACTTAAATTGCCAATTACTGCTAACTTGGTTAGGAACAATCCACTGACCAAAGCAAGAATAAG GATTAACAGTACAAAATTGTATGCCTATGATAGAATTTTGCAGACATCTTCCAGAAGCATCATCCATAAGAAAGAAGAGG GCTCTCTCCAATCTTTCTAAATATTGGTAGTCATTCAGCTAAATTAAAATATCAAAGGCTCTCTAACTACACTACTAGCT TCTCTTTTCAAGCGTTGATTTATAAGAAAATCTCTACTCCGATTTATTTGTCATTTCAAAAATCCTAGATAATTTTAATT ACTATTCTCTCATTTATACCCTTATACATGAGTAATTTAAAAGAGCGAGAATTGTTGAGAGATCACATGTTAGAGGAATA AAAGGTATATTAGGATAAGCAATAATTTTAATGTGAACGAGGACATCATTACATTTCTTAGTATATGTGCCATAATCTTA AATGATACTTAAAGAAAGGAATGAGTACTATCATGGTAGAGGGTAAAACTTACTTCAGTGCTGACTACAGGAAAGTTGAA TCTGGTCCCTTCAGGTTCAACCTTGAGAATCTTGGAGGCCCTAGCAAAAGATGAGATTGCCAGTCCATTCCAAGATACAA TAACCTAGAAACATAGGATCTCTTGAGAATTGAGAGAATACATACAAGTTCAAACCTAAATCATTATAGGTGGATCCCAG ATTAATCAAAAAATTGTTAAAAAGGTAAATACTTTATCATCCAAATGTGGCCTTGACCGCCTTGACCTCACTTCAAACAA TTTACGCCTACATTCGCCTAGAACTTCTTGATATGTCTCAACTGACATGCCATATTTTGATGCCATTTCTGAAGGATCCT TTCTCTCAATCAGGACATTCTTTCCCTTGAATTCATCGTGAGGATCACTCATTCTAGACAGGTCACAGTTTCCCGACTCC TTTATGTAATAATGCTCCTCAAAAAGAGCTGCATGCTCTCCAAGTATGTCTTCAACCTAAACAGAACAAGCCAGAATCAA AGCCACATCCAAAAATAACAAACAAGCCAATCTTTAATCACAATACTTCCATGAGTAATTGTCCAGACAAGACGCTATAA ATGTAATCGACAAATTGCAAAAAGAATCAGGACAATTAGACACATTGCCAGGAGCTAGACATGCTCAGAAAAATCTAACG TAAATATCTCCAGATCAACTCCAAAAAATACCGTGGTTACATTGTGCTCAGCACACTAATTGATGATAAATAAGAAGTAG GCTAATCAGGACATTGTTCTTCTGAAAATTGTATTATTGATACATGTCTGAAACAAATAATTTGATTCAATTAAATCCTT AAAGAATTTCAATTGAATGCCTCATAGTATCATTGGGCCATGCCAGCAACTAGAAGACCACAAATCCTTTTATGTCCACC CCAGATTATGATTTTGGACCCCATTGAAAAAAAAAATTGTAGTTACCCAATTGAATCAAGTTTTTTTGGACCACGATGAA AAGTTGTGTTTTTTCCAGGGACCTACAATGTAATAATCCATGAGAAATAAATTAATGAAAAGCAGATCAGGCATGGATTA AATACCTCTTTACTGGTCCATACGTAAAAGGCTCCTTCCTTTTTTGTTGTAGCTCCGTCAGTCTCTGCACTGTCAGCGTC CTCTGCTGAAAAGATTTCACCTTCTGGACCAATCATGTCTCGCCTTAAATAATCAAGGATATCCCTTGATACACATGAAA AGAAGTTATCTTTTGTGATAGAAAAAGCATCTAAAAAAACATTAGCCAGCTGCCCTTGATCATATAGCATCTTCTCAAAA TGTGGAACTGCAATGACATAACAGCTCAACAATTTAATCATCTTTACAACATTGACCAAGAACATTGGATGTAACAGCAT GTGATAACTAACTTGGAAAAATCAAAATACTCAGGCATTTGCATATGTACAATATAACTACAGCTCATAGACATAACAGA CGCATCTCGAATTCCCACAGAGATTACTTCTGTCCAAGATAAACTTACCATGCCAGCACTTATCCACGCTATATCTGTGA AAACCTCCTCCAATATGGTCATGAATGCCCCCTTTTGCCATGCATTGTAAGCTAAAGAAAACCTTTTTCTGACTTTCATG AGCTCTAGCCAACTTCCCGGCCTCCACCAACTTCTTGGAGTGGTAAAGCATCAAGTTTATCTCAACTGGTCTGGGAAACT TTGGTGCAGATCCAAACCCACCAAACTTTGAATCGTAGCTATCAGAGAGCTACAAACAAAATTGTAGATTGAATGATACT CAAGCACTGAAATCCCTCAACATAAATTAAGGATTCAACAAAAAGAACTCCCATACATGGAGATATAAGAAATTTTCTTG GAATTAAAAGAAAAATATATTGCTGGACCCGTACTGTGATAGTATGAAAATCTTACAACGGTGGCTGCTATCAGCTTTAA ATTCACTTTTATGAATGAGAGAACAAGATTGCTTTGTTTTAACAATTACCTCACTCTCCCCCATTCCTCATATACCATAA AGAGAAAACACAGAAAATAACAAGACCATATATACAGAAACTCCTTTTTGTAGTCTTAGAAATGGAAAGGAATTCATTCT AAGAGAATTGAATTAGTCAACAAAAGTGGATTCACAAAACCTTACCTGCTCTGAGCATAGACGTATCGCATCATCTGGAA CACCATCGGCCAATTTATCAGAATCTGAACGACCAGACAATGCCTCAGAAAGCTGTTCAATTGCAAAAGCTCCACTCTTA ACCAGCATATCCCTCTTATCTTCCCAAGCCTCTTTTACTTTTCTGGAGAAAGCAGGAACAAATGGTATACAAATAAGAAC TTCAACAGACAGAATAATAATTTCAAACCATTAATCTTTAAGGTTTTATCCTCAACAAATTGAGGCACGCCCTCCACTTA AATTACTGAGAAAGAGAGAATCTAAGCAACTTGATATTCAAGCTGAGATGTGCAACAATTCTCACCTAAGTAAAGTCTTA AATCCAGGTCGTCCATACTTATCATCAGGGGGAAAGTAAGTCCCACCCATTAAAGGTTTCAAGTCAGGTGAAAGAAACAC ATTCAGGGGCCAACCTCCTCCACCATACAAAGCCTGCACATACGTCATGTATACCTGAAGAAGAAAAAAACCAACCTTTA GTGCATCTTGTTGCCAGTGGTA
CDS sequence (LotjaGi1g1v0767700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCCCTGAAACTGCAGAAGCGGCTTGCAGCCAGCGTGCTCAAATGCGGAAGAGGGAAGGTTTGGCTTGATCCCAA TGAATGCAATGAAATCTCCATGGCCAATTCTCGCCAGAACATTAGGAAATTGGTTAAGGATGGATTTATTATCAGGAAGC CCACCAAGATTCATTCCCGGTCACGAGCTCGCAGGATGAAGGAGGCTAAGAGGAAGGGTCGCCACTCTGGATATGGTAAG CGTAAGGGTACAAGAGAGGCAAGGCTTCCCACCAAAATACTTTGGATGAGGAGGATGCGTGTGCTCAGAAGATTGCTCCG TAAGTACAGGGAGTCCAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGA ACAAGAGAGTCTTAATGGAAAGCATTCACAAGTCGAAGGCTGAGAAGGCCAGAGAGAAGACTCTGTCTGATCAGTTTGAG GCGAAGCGTGCCAAGAACAAGGCAAGCAGGGAAAGGAAGCTTGCTAGGAGGGAGGAGCGCTTGGCCCAGGGTCCTGGCGA TAAACCATCAGCAACACCCAGTGCTGAACCTGCTCCAGCACCTAAAGCTGCCCAAGCACCAAAGAAATCCAAGAAGTGA
Protein sequence (LotjaGi1g1v0767700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE AKRAKNKASRERKLARREERLAQGPGDKPSATPSAEPAPAPKAAQAPKKSKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 212 | 212 | 2.5E-134 | ||
| PANTHER | 1 | 212 | 212 | 2.5E-134 | – | |
| Gene3D | 1 | 56 | 56 | 8.2E-32 | ||
| SUPERFAMILY | 3 | 144 | 142 | 1.83E-63 | ||
| Hamap | 3 | 149 | 147 | 20.427 | ||
| SMART | 3 | 146 | 144 | 2.0E-96 | ||
| Pfam | 4 | 146 | 143 | 7.6E-66 | ||
| CDD | 4 | 167 | 164 | 6.88485E-77 | ||
| ProSitePatterns | 7 | 26 | 20 | - | ||
| MobiDBLite | 57 | 79 | 23 | - | – | |
| Gene3D | 57 | 186 | 130 | 1.3E-58 | – | |
| MobiDBLite | 57 | 85 | 29 | - | – | |
| MobiDBLite | 149 | 212 | 64 | - | – | |
| MobiDBLite | 149 | 184 | 36 | - | – | |
| Coils | 161 | 181 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
Expression pattern of LotjaGi1g1v0767700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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