Transcript — View — Lotus Base

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LotjaGi1g1v0768100.3

Overview

Field	Value
Gene ID	LotjaGi1g1v0768100
Transcript ID	LotjaGi1g1v0768100.3
Related isoforms 2	LotjaGi1g1v0768100.1 LotjaGi1g1v0768100.2
Lotus japonicus genome version	Gifu v1.2
Description	BTB/POZ domain-containing protein family; TAIR: AT1G03010.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp\|Q9SA69\|Y1301_ARATH BTB/POZ domain-containing protein At1g03010; TrEMBL-Plants: tr\|A0A151TWS2\|A0A151TWS2_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi1g1v0768100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:134081645..134083798) extracted from Lotus japonicus Gifu genome v1.2.

ATGACAGAAGAATTTGCAGAAAAAAACTTGGAAACCAGAGTTGAAGCATATCTAAAGGAGACAGTGCTCCCAAACACATC AAGCACAATTTCTGTTCTTCATAGTTGTGAGACTCTTCTTCCCATATCAGAAGAAATCAACCTTGTCAACAGGCTAATCA ATGCGATTGCAAATAACGCTTGCAAAGAGCAACTTACTTCTGGCTTGCAAAAACTTGACCACACTTTCCCTTCTAAAACC ACATCAACCATGGAACCAGAAACACCCTCTTGGGGAAAGTCTTTCAATGTTCTCAACCTTGATTTCTTCCAAAGAGTTGT ATCTGTTATGAAGTCAAAAGGGTTGAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCTCAAAATTCTCTTCAAG GGATTTGTGTTAGGGACCCCAATGTGGTAAAAGGAAGTGCACTTGACATGGAGTTGCAGAAGAAACAAAGGGTCAGTGTT GAAGCTATAGTTGGTTTACTCCCAACTCAATCAAGGAAGAGTTCAGTTCCAATGGCATTTCTCTCTTGTCTATTAAAAGC TGCAATAGCAACATCAGCATCAACTCCTTGTAGATGTGATTTAGAGAGGCGAATCGGTCTGCAACTTGACCAGGCAATAC TTGAAGACATTCTAATTCCAACAAATTCACCTCAAAATTCCCACAGCACAATGTATGATACAGATTCCATTTTGAGGATC TTTTCTACTTTTCTAAACTTGGATGATGATGATGATGAGGACAATGATGATGAAGATAGTCACTTCAGAGATGAAAGCCA AATGATGTATGAGTATGGCTTTGAGAGTCCTGGATCTCCAAAACAAAGCTCAATTCTCAAGGTGTCAAAGTTATTGGACA ACTATCTTGCTGAAGTAGCACTGGACTTGAACTTGTTACCATCAAAATTCATAGCCCTTGTGGAGCTACTTCCAGATCAT GCACGTGTTGTCAGTGATGGACTCTATAGAGCTGTTGATATCTTTCTTAAGGTGAGAATTCCCTTGCAAGTTTACTCAAG CTAAGAGTTATAACCTCTAACCAAAAGTGATTCTAGAATATTTCACAGCGAAACCAAACACGCTATAGTTAGAACTAAGA TATAGTGTGTGTTTTTTATTAGCGTTGTTAGAATTGATTTTGAATAAAATTGCTTTCGGTAAAAGTGATTTGAGAGTGAA GTTATTTATACTTGCATACATTTATGGAAAAAGTGATTTCTATAGGGTGATATTGTGATTTCTAGTTATGAAATTAGACA ATTGATTATGTGCATGTTTGATAGTGCATGTTGGTATACATGGTGGAAAACTACAACGAAGCTAAAATCAGAAGCAACTT CTCTTAGCTTTTGCGACTGTCCACTATGATTTTAGCATGACCGTGGTTTTCCATCCTATATCCAAATATGCACTATATCC ACGGCATAAGCTACTCTGCCTACCTTGTGTTCATAATTGACTTTGGAACTAAAATTAATTCTGCCAAACATCAGTATGCT CTATCACTGTTGATTCAAGATATCAATGACAGTCGTTAACTGTTGTTTACTTATGATGGAGGTTCATCCAAACATGAAGG ACTCAGATAGGTATCGCCTATGCAAAACCATAGATTGTCAGAAACTGTCTCAAGAAGCATGCAATCATGCAGCACAAAAT GAAAGGCTACCAATGCAGATTCTGGTTCAAGTTCTTTACTTTGAGCAAATCAGGCTCCGCAATGCCATGAATGGAGAAGG AGGACACAGTAATCAGATCTTCTTTGGTGGTGGGTTTCAGGGTAATCAACAATTCCCTCAACGTTCAGGAAGTGGTGTAG GAAGTGGAGCCATTTCGCCAAGAGATAATTATGCCTCGGTGAGAAGAGAGAACAGAGAGCTGAAGCTTGAGGTTTCAAGA ATGAGAATGAGGCTCACTGACTTGGAGAAAGACCATGTTTCCATAAAGCAGGAGTTTGTGAAGCCCCACACTGCTAACAG GCTCTTCAAAGCGTTCACCAGAAAGCTAAGCAAGCTCAATAATGCTCTGTTCCGGAGAAAGAGTGTTGGTAATGGTGGCA GAGAAAGAGAACATAATAGTCCACAGCAAACTCGGTTCCCTTTTCCAAAGCGAAGGTGCCACTCAGTTTCATAA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0768100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAGAAGAATTTGCAGAAAAAAACTTGGAAACCAGAGTTGAAGCATATCTAAAGGAGACAGTGCTCCCAAACACATC AAGCACAATTTCTGTTCTTCATAGTTGTGAGACTCTTCTTCCCATATCAGAAGAAATCAACCTTGTCAACAGGCTAATCA ATGCGATTGCAAATAACGCTTGCAAAGAGCAACTTACTTCTGGCTTGCAAAAACTTGACCACACTTTCCCTTCTAAAACC ACATCAACCATGGAACCAGAAACACCCTCTTGGGGAAAGTCTTTCAATGTTCTCAACCTTGATTTCTTCCAAAGAGTTGT ATCTGTTATGAAGTCAAAAGGGTTGAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCTCAAAATTCTCTTCAAG GGATTTGTGTTAGGGACCCCAATGTGGTAAAAGGAAGTGCACTTGACATGGAGTTGCAGAAGAAACAAAGGGTCAGTGTT GAAGCTATAGTTGGTTTACTCCCAACTCAATCAAGGAAGAGTTCAGTTCCAATGGCATTTCTCTCTTGTCTATTAAAAGC TGCAATAGCAACATCAGCATCAACTCCTTGTAGATGTGATTTAGAGAGGCGAATCGGTCTGCAACTTGACCAGGCAATAC TTGAAGACATTCTAATTCCAACAAATTCACCTCAAAATTCCCACAGCACAATGTATGATACAGATTCCATTTTGAGGATC TTTTCTACTTTTCTAAACTTGGATGATGATGATGATGAGGACAATGATGATGAAGATAGTCACTTCAGAGATGAAAGCCA AATGATGTATGAGTATGGCTTTGAGAGTCCTGGATCTCCAAAACAAAGCTCAATTCTCAAGGTGTCAAAGTTATTGGACA ACTATCTTGCTGAAGTAGCACTGGACTTGAACTTGTTACCATCAAAATTCATAGCCCTTGTGGAGCTACTTCCAGATCAT GCACGTGTTGTCAGTGATGGACTCTATAGAGCTGTTGATATCTTTCTTAAGGTTCATCCAAACATGAAGGACTCAGATAG GTATCGCCTATGCAAAACCATAGATTGTCAGAAACTGTCTCAAGAAGCATGCAATCATGCAGCACAAAATGAAAGGCTAC CAATGCAGATTCTGGTTCAAGTTCTTTACTTTGAGCAAATCAGGCTCCGCAATGCCATGAATGGAGAAGGAGGACACAGT AATCAGATCTTCTTTGGTGGTGGGTTTCAGGGTAATCAACAATTCCCTCAACGTTCAGGAAGTGGTGTAGGAAGTGGAGC CATTTCGCCAAGAGATAATTATGCCTCGGTGAGAAGAGAGAACAGAGAGCTGAAGCTTGAGGTTTCAAGAATGAGAATGA GGCTCACTGACTTGGAGAAAGACCATGTTTCCATAAAGCAGGAGTTTGTGAAGCCCCACACTGCTAACAGGCTCTTCAAA GCGTTCACCAGAAAGCTAAGCAAGCTCAATAATGCTCTGTTCCGGAGAAAGAGTGTTGGTAATGGTGGCAGAGAAAGAGA ACATAATAGTCCACAGCAAACTCGGTTCCCTTTTCCAAAGCGAAGGTGCCACTCAGTTTCATAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0768100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTEEFAEKNLETRVEAYLKETVLPNTSSTISVLHSCETLLPISEEINLVNRLINAIANNACKEQLTSGLQKLDHTFPSKT TSTMEPETPSWGKSFNVLNLDFFQRVVSVMKSKGLKQDMISKILINYAQNSLQGICVRDPNVVKGSALDMELQKKQRVSV EAIVGLLPTQSRKSSVPMAFLSCLLKAAIATSASTPCRCDLERRIGLQLDQAILEDILIPTNSPQNSHSTMYDTDSILRI FSTFLNLDDDDDEDNDDEDSHFRDESQMMYEYGFESPGSPKQSSILKVSKLLDNYLAEVALDLNLLPSKFIALVELLPDH ARVVSDGLYRAVDIFLKVHPNMKDSDRYRLCKTIDCQKLSQEACNHAAQNERLPMQILVQVLYFEQIRLRNAMNGEGGHS NQIFFGGGFQGNQQFPQRSGSGVGSGAISPRDNYASVRRENRELKLEVSRMRMRLTDLEKDHVSIKQEFVKPHTANRLFK AFTRKLSKLNNALFRRKSVGNGGREREHNSPQQTRFPFPKRRCHSVS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32370:SF30 View details on PTHR32370:SF30 Search for proteins/transripts with this domain View external data on PTHR32370:SF30	1	502	502	9.2E-267	–
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	1	502	502	9.2E-267	IPR043454 Show description in modal box View details on IPR043454 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51649 View details on PS51649 Search for proteins/transripts with this domain View external data on PS51649	89	388	300	82.022	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03000 View details on PF03000 Search for proteins/transripts with this domain View external data on PF03000	91	364	274	8.9E-84	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	434	461	28	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	497	527	31	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0768100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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