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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0768900 |
| Transcript ID | LotjaGi1g1v0768900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2; TAIR: AT1G09155.1 phloem protein 2-B15; Swiss-Prot: sp|O80494|P2B15_ARATH F-box protein PP2-B15; TrEMBL-Plants: tr|G7KWJ9|G7KWJ9_MEDTR F-box protein PP2-A13; Found in the gene: LotjaGi1g1v0768900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134143656..134145224) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATATTATGTCAAAAAAAATACCACTTTTAACAGCTGGAAACCGCAGCAAACTTGCCTCTATATAGAGAAAATGAAA TGTCCATCATCTTCAAATCAAACCTTTCAAAAATCCACCACTTGCTCTAAAATATCTCTCTGATTTTGCTTCCATAGCAT AAACCACCAAAGACATTACTATCCTATTCAGACAGAGGAGTGAAACATTATCTTCATTTCAATCCTTTCAAGAATCCCAA GGCATCTTGCTCCAACATGATATCATTGCCAGAAGATTGTGTTTCTGAAATCTTATCACACACATCTCCACCAGACGCAT GCAGATTTTCTCTAGTTTCCTCCACCCTTCGCTCCGCCGCTGACTCCGACATGGTTTGGAGGAGCTTCTTACCCTCTGAT TACGAGGACATTGTTTCCAGGGCTGTGAATCCTTCCGCTCTTCAATTCTCTTCTTACAAGCAACTCTTCCATGCACTTTG CAGCCCTCTTCTTCTTGATGGGGGTAATAAGGCACGTTACCTTCTTTCAATTCAATTCATTCCATGCTCTGTTTCTTGCT CTGTTTCATACTCTGTTCCATGCTCTGTTTCTTGCTCTGTTCTATGCTCTGCTCTGATTTTACTATGTTCCGCCTTCACA GAGCTTCAAATTGGATAAGCTTTCTGGTAAAAAATCTTACATCCTCTCAGCAAGGGATCTCTCAATAACATGGAGCAGCG ACCCCATGTTCTGGAGCTGGAGATCAAACCCTGAATCAAGGTCATTAATTATTTTTAAAGTTTCAGCTTGTAATTCTAAG AATAACTTAGAAACACTGATATTGATTTTAATGAATTAAGATGTCTAATTCAGAGGGAAAATGGAAAATTTTGCAGATTC AGAGAGGTGGCTGAGCTGAGAACAGTGAATTGGTTGGAAATAGAAGGGAAAATCAGAACAGGGGTTCTGACTCCCAACAC GTCATACGGGGCATATCTGATCATGAAAGTCTCACATAGAGGGTACGGGCTTGACTCTGCGCCGGCGGAGGTGTCGGTTG CGGTGGGGGGCAGAGTACTGCGGAGGGGGAAGGCGTATTTGGGGCAAAAAGATGAGAAGAAGGTGGAGATGGAGACTCTG TTTTATGGGAACCGAAGAGACATATTCAGAAACAGAGTGATCCAACTAGAGCAATTAGAAGAAGAAGGTAAAGATGGAGG GGTAATTCCAGTTCCAGGGAAGAGAGATGATGGGTGGATGGAAATTGAGCTAGGAGAATTTTTCAGTGGTGGTGGTGATG TTGAGATCAAGATGGGTCTGAGAGAAGTGGGGTATCAATTGAAGGGAGGTCTTGTTGTTGAAGGCATTGAAGTCAGGCCT AAACAAACTCAATCCACACAAAAAACAAAATGTTGAGCATAGATAGCTCATAACTTGTAATTTACATGAAAGTGTTATCT TTTTTTTTCTTGTAAAGTGTAAAAATGAAAGGAGTATTATGTTTTGTTTTAGTGTGTTTATGAAACCCAAAATCAATTCT AGTAGATAGTAGACTAAATCAATTATGAATGAAAATAATTAAAATGTTG
CDS sequence (LotjaGi1g1v0768900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATCATTGCCAGAAGATTGTGTTTCTGAAATCTTATCACACACATCTCCACCAGACGCATGCAGATTTTCTCTAGT TTCCTCCACCCTTCGCTCCGCCGCTGACTCCGACATGGTTTGGAGGAGCTTCTTACCCTCTGATTACGAGGACATTGTTT CCAGGGCTGTGAATCCTTCCGCTCTTCAATTCTCTTCTTACAAGCAACTCTTCCATGCACTTTGCAGCCCTCTTCTTCTT GATGGGGGTAATAAGAGCTTCAAATTGGATAAGCTTTCTGGTAAAAAATCTTACATCCTCTCAGCAAGGGATCTCTCAAT AACATGGAGCAGCGACCCCATGTTCTGGAGCTGGAGATCAAACCCTGAATCAAGATTCAGAGAGGTGGCTGAGCTGAGAA CAGTGAATTGGTTGGAAATAGAAGGGAAAATCAGAACAGGGGTTCTGACTCCCAACACGTCATACGGGGCATATCTGATC ATGAAAGTCTCACATAGAGGGTACGGGCTTGACTCTGCGCCGGCGGAGGTGTCGGTTGCGGTGGGGGGCAGAGTACTGCG GAGGGGGAAGGCGTATTTGGGGCAAAAAGATGAGAAGAAGGTGGAGATGGAGACTCTGTTTTATGGGAACCGAAGAGACA TATTCAGAAACAGAGTGATCCAACTAGAGCAATTAGAAGAAGAAGGTAAAGATGGAGGGGTAATTCCAGTTCCAGGGAAG AGAGATGATGGGTGGATGGAAATTGAGCTAGGAGAATTTTTCAGTGGTGGTGGTGATGTTGAGATCAAGATGGGTCTGAG AGAAGTGGGGTATCAATTGAAGGGAGGTCTTGTTGTTGAAGGCATTGAAGTCAGGCCTAAACAAACTCAATCCACACAAA AAACAAAATGTTGA
Protein sequence (LotjaGi1g1v0768900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISLPEDCVSEILSHTSPPDACRFSLVSSTLRSAADSDMVWRSFLPSDYEDIVSRAVNPSALQFSSYKQLFHALCSPLLL DGGNKSFKLDKLSGKKSYILSARDLSITWSSDPMFWSWRSNPESRFREVAELRTVNWLEIEGKIRTGVLTPNTSYGAYLI MKVSHRGYGLDSAPAEVSVAVGGRVLRRGKAYLGQKDEKKVEMETLFYGNRRDIFRNRVIQLEQLEEEGKDGGVIPVPGK RDDGWMEIELGEFFSGGGDVEIKMGLREVGYQLKGGLVVEGIEVRPKQTQSTQKTKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 110 | 110 | 9.4E-8 | – | |
| ProSiteProfiles | 1 | 44 | 44 | 11.749 | ||
| PANTHER | 3 | 287 | 285 | 1.6E-129 | – | |
| PANTHER | 3 | 287 | 285 | 1.6E-129 | – | |
| Pfam | 3 | 44 | 42 | 1.8E-8 | ||
| SUPERFAMILY | 3 | 74 | 72 | 3.53E-13 | ||
| SMART | 4 | 44 | 41 | 9.5E-8 | ||
| Pfam | 95 | 286 | 192 | 1.2E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0768900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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