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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0769000 |
| Transcript ID | LotjaGi1g1v0769000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2; TAIR: AT1G09155.1 phloem protein 2-B15; Swiss-Prot: sp|O80494|P2B15_ARATH F-box protein PP2-B15; TrEMBL-Plants: tr|I3T595|I3T595_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0769000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134146424..134148988) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGATTTGGTCTCTTCCATTCAAAGTTAATTTCAAAATAATTAAATTAACAAGTGTAGTGAATATGGAACTTCTACC TGAGGATTGTTTTGCACACATTTTGTCATTTACATCCCCTCAAGATGTGTGTAGATCCTTTCAAACCTCCTCCATTGTGA GGTCAATGGCGGATTCAGATAGTGTCTGGGAGAAATTTCTGCCACTATATTATCATGGTATTATTTCTAGGTTGGTGGTT CCTCTCTCATTGCCCTGTTCATCAAAGAAAGACTTATTTGTCAGGTTATGTAAGCCACAACTTGTTGACGACGGTAACAA GGTAACAATTTCTAATACTAATATCTTTTGTTTTCAATATTTGTTGATTTTCCAAATGATTCAACATGGTACTGATAGAC ACCACTAATAATGACATTTTCAAAATATAGGTCCACTTTCACTTTGTATTGATATGACACGATGGTTGCAAACAAACAGA CCATCTTCATATTAATCTTTATATTTAAGAAACATGAAAAGTCTACATCGATCTATAATTTTATCCGTTACATTGATAGT TGATTATTACTTCTATCAATCAGATAAATACTAGGTCGAGTACCTTTGTCTATGTTTCTTTAGTTAAAGATTAATATATA TATATATATATATATATATAGTGTGTGTGTGTGTAAAAATGCCCAAATACTTACATATATATAAGAATAATATTTATTTG TATTTTTAAAAATAAATATATTTATTATATATATTTAGAAAATAATAGATAAATTTATAGAAATGATTTAATTTATATGT ATTGATAGTGTAAAAAGTTTTACACAGACATCTAATTACATCTCTCAATTTTCACATAATATGACAAATTGATGGATTCT AATTGAATGATTGTGTAAAAAAAATTATAGTGTCAATAATGCATAGTAATTAAGTTCATCTATGATAATATAATATTACA TTAATATAACTAAAATAAGACCAAGATTTTATAGCAAAAAGAACATAGAGCACCCATCAAAGTGGGGAAACTTTGCTAGA AGTTTAGTTTAGGGTTGTTTGTGTATGCTCAGGCGGGGGAGTAAATATGAATTTAGTAAAATTAGTTTATATTTATTAAA TTCATATTTACTCCACTGTCTGTGGATGCATAAATAGCCTTATAGGAATTTTCTATTTTTTTATGATATTTTTTAAAGTA AAATAAAAAATTAGAGGATTAAAGAAAATACATATTCATTGTATAAAAGAATTATTATTATTATATACATGAAAGAAATA GATAGCCTGGAAAAACTCTACCATCAGCAACACAAACATTAGTCTACACAAAAAAAAAAGGGCAAAAAATACTTTTTGAT GTAGATGCAGAGTTGCAGACAATCAAATCCAATAAAAATAAACCTTAATTATTAAACTGGCAATCATAAATAATGATAAT CAAAACTCAATGAAAGTGGAAACTCTGTATAATGGAAGGATGCTACAATTCATTCCAATAAGGTGAACAGAAATTGATGA TTTAATTTCAAAATCAAACAGCAGCATTTGTGATAGTATTAACAATGATTTGTGAGTGACACACAGATGCTATCAATTGA TAAAACATCAGGCAAAATATGTTACCTATTGAGCGCAAGGAAGCTTTCAATTGCATGGGGAAGCAGTCCTCTGTATTGGT CCTGGAAACCAGTTCAAGGCTCAAGGTATAACTAATCAGTACCTTTTTTTAAAAAAAAATTGGTTCCTTGAATTGTTCTT GCAAGTTCGAGCCAATATAACCATTATGAGCGACAAAGCTCTGCCTACAGCTTAAACTTGGAATATCTGCTTAACTTAAA ACAACCTTGTGTCAGTTAATCTAGCGTTTGGTTGTAAAAAATTTACTATAAGATAGTAAGATATTACAACCTTAACCCCC TTTTGTGATTTGTGTGTAGGTTTGCAGAAGCTGCTGAACTCAGAACCATTTGCTGGCTAGAAATCACCTGTAGCATAAGC AGTGGAATGCTATCACCTGAAACAATTTACGAAGCTTATCTGAAAGTGAAAATCGCGGATCGTGCTTACGGGTTAGACTC GTTACCTTCAGAGGTGTGGGTGGAGGTTGGCAACCGCAAATCGAAAGGAACTGTATATATACGAAAGGGGAAAGCCTCTT GTCACTGCCAAAGTAGCGAGCATGATGAAGATGAATGGTTGGAGATTGAGTTGGGAAGTTTCTACACCAATTCTGATGAT GAAGAGGTTAGAATGTGCCTCAAGGAGATCAAAGGTGTGCATTTGAAAGGTGGGCTAATAGTTGATGGAATTGAAATAAG GCCCAAACTGTTATAATTAAGGAGCTTCCATGTGTGGGTTGTCACATAACAACATCATAGTCATTACTCATTTGTGAAGT GGCATGACAATACTTGTTGTTTGGTTCATTCATGTGTATTAAAGTTAATGTAATTTTGACAAATCTGGGCCTAAATACAA AACATAGGCTTAGCGTGTTTGGTTCTACAATAGAAAGTCTCTTAAAAAAACGTTGCAGCACTCACTTCAATTTTTTTTAC AACAC
CDS sequence (LotjaGi1g1v0769000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTTCTACCTGAGGATTGTTTTGCACACATTTTGTCATTTACATCCCCTCAAGATGTGTGTAGATCCTTTCAAAC CTCCTCCATTGTGAGGTCAATGGCGGATTCAGATAGTGTCTGGGAGAAATTTCTGCCACTATATTATCATGGTATTATTT CTAGGTTGGTGGTTCCTCTCTCATTGCCCTGTTCATCAAAGAAAGACTTATTTGTCAGGTTATGTAAGCCACAACTTGTT GACGACGGTAACAAGATGCTATCAATTGATAAAACATCAGGCAAAATATGTTACCTATTGAGCGCAAGGAAGCTTTCAAT TGCATGGGGAAGCAGTCCTCTGTATTGGTCCTGGAAACCAGTTCAAGGCTCAAGGTTTGCAGAAGCTGCTGAACTCAGAA CCATTTGCTGGCTAGAAATCACCTGTAGCATAAGCAGTGGAATGCTATCACCTGAAACAATTTACGAAGCTTATCTGAAA GTGAAAATCGCGGATCGTGCTTACGGGTTAGACTCGTTACCTTCAGAGGTGTGGGTGGAGGTTGGCAACCGCAAATCGAA AGGAACTGTATATATACGAAAGGGGAAAGCCTCTTGTCACTGCCAAAGTAGCGAGCATGATGAAGATGAATGGTTGGAGA TTGAGTTGGGAAGTTTCTACACCAATTCTGATGATGAAGAGGTTAGAATGTGCCTCAAGGAGATCAAAGGTGTGCATTTG AAAGGTGGGCTAATAGTTGATGGAATTGAAATAAGGCCCAAACTGTTATAA
Protein sequence (LotjaGi1g1v0769000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLPEDCFAHILSFTSPQDVCRSFQTSSIVRSMADSDSVWEKFLPLYYHGIISRLVVPLSLPCSSKKDLFVRLCKPQLV DDGNKMLSIDKTSGKICYLLSARKLSIAWGSSPLYWSWKPVQGSRFAEAAELRTICWLEITCSISSGMLSPETIYEAYLK VKIADRAYGLDSLPSEVWVEVGNRKSKGTVYIRKGKASCHCQSSEHDEDEWLEIELGSFYTNSDDEEVRMCLKEIKGVHL KGGLIVDGIEIRPKLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 254 | 254 | 1.2E-112 | – | |
| PANTHER | 1 | 254 | 254 | 1.2E-112 | – | |
| Gene3D | 1 | 109 | 109 | 8.4E-7 | – | |
| ProSiteProfiles | 1 | 44 | 44 | 9.286 | ||
| SUPERFAMILY | 2 | 75 | 74 | 1.16E-11 | ||
| Pfam | 4 | 44 | 41 | 2.9E-4 | ||
| Pfam | 95 | 253 | 159 | 5.0E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0769000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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