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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770600 |
| Transcript ID | LotjaGi1g1v0770600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-box protein; TAIR: AT5G27710.1 T-box protein; Swiss-Prot: sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit; TrEMBL-Plants: tr|I1JRA6|I1JRA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0770600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134281342..134284426) extracted from Lotus japonicus Gifu genome v1.2.
CAAAACAGAGTTTCTCCAACTATAACAAGATATGGTAGACTGATGTGTGTATAATTCTTTCCCTTTTGATTTTTGTCAAT CATATGTGTTTTTGCAGCAAGTCCTTTGCGAATTATCCTTGAAAACTCATAACAAGTTCACAATTTTTCTTTTCTTTCTA TCTTTCAGATTAAAGTAACATTTAAACATTCTTATGGATGTGTGTTTAACCCATTTAGCCTGGTTTGTTTTCTATATTGG GTTCCTATGCATTTGTAGGGAGAAGTAACAAGTTTCATGTGTGAAAGTCAATGAGAGGGTGAGAACGCCAGAAACAAATG AGACACCCCTCTCCTTCAATCTCTTTGGGGCTGGCAATTTTCCTCTCATTTTCCATTACGACGTCGTCACAACAACACTC ATCTTTTCCCTCAATAATCCCATTCTTCTCCAAACGTGACGACGCTCCTCTTTCGTTCAATCCAATCCCCAAAGCCACTC CCTCAGACTTGTTATCTCTGTTAGGTTCCAATTCTCAGTCTCAAACCGTCAACCCCGCCGTAGCGCGCCACCTCAAGTCA TGCCTCAAGTTCCTCGTTCCGTTTTCTCCGCCGGAGCCTCGTCATCGGAAATTGGGATTGGGCCGTGCCGGCACTAGTCT CACCGGCGCAACCGGTAGAGACACCGCGAACAACTTAATTTGGTTCCCGCCGGAGCCTGTTTTGGATCTGGCGCGCATCG CCGTCGATTCCGGTGGTGATCCTGCTGCTATTCAACGCGCTCTTGACCCAACCATCATCCCAGTTACTCTCTCTCTCTCT CTCTCTCTCACGCTTCTCTTTGCTTTCTCACCAATGTAACTTAACTTGCACTCTTTGTTGTTGTTGTCATCGCTTAGGTA CCTGATGTTGAAGGATCAAACAAAAACCGTTGTCAACTCACCAGAACTCCCTATGGCAGACACTTCATTTCTCAGGTTTC TGTTAGATGAACAGTCTACACATTACACAGTCTTATACTGAGCTAAATATTTAGTTTAGTAGTGTTATTCAATTTGGAAT CAGTAGCTATAGCTATCGATGAAAAGTGCTTTTGCCTTTTTGCCGTTTCAACTGTTTGTTATGCAAAATAGCTTGAGAGA GAAAAAAGAGGGTGCTGATGTTACATTTTCTCTCAAATTGCAGGAGTTGAACCTGTATCTTAAGTTTTTGTTTGAACTCA TTGCTGATCGTGCTCCCTCTGTTGGGTTCAAGGTTAGCTTGAACCGGTTTGATTTGTTCCACGGTCACATGTTTCTGGCA GTCGACACTGGAAGACTTGGTATATTGTATGTTGATAGAGAATTAGCGATACCTTTCTCTGATTGTTACATGTTTGAGAG GCACATTTATTTCCTGTATCATAGATATATTTTACTTTGTGAAAGTGTTTCAGCTCGTTAGAAATAAAAATGCAATGATT TCATGTTTGACAGATTCCATGCACGGGAATACCCCGCATATGATGAACAAGTATTCCCGTACAATTTGGGTTTTTGTCAG AAAGGTGAATTACTATCTGCTTCTATAAATGTTATGGATAGTTCAGGTTACATTCATCGATGTTAATCTTCCAATTTTTT GTAGGCCCTGTGTTTGGAAGAATATAGTTTTGTAATCTGTAAATCTCGTGTGTTGCTTCTTAGTTTTTCTGCGCACTTGC TTGTGAGGGAGAGAACATGACATAAGAGCTCCTTGTAAACACAAACCCATATAAATTTTTTATTGTCTATTATTTTGATA CTGAAATTTTAAGAAGCTTCTGTTCTTCTTTTAATCTGCCACTCTTCTTTCAGGGACCAATGTGACATATGATGATTCCA TGAACTTGAGAAATATTCTCTGGCTGGCTCCATTACCTGGTGATTCTGCAAAATCTTGGTTGGCACCAGGTACCCCCAGT ACATCTGTATAAATTTGAGTGCTTTTCACATCGTATAAACTCTTAAGTTCCACGTTAACTTTTTAATATCAATAATGGGA TCAACCTATCACTTCTACAAATCAACCCATGCAGCATAAGTTTGTCATAGCTTAGGTATGTGGACCTGAATTTGATGGTA AATGAAGTTCAGAAGTTGATATGTTCTTCCTGGTTTCTGAATTTATCTGTTATTGTCGCTCTTGGTAGCTTGGACTAAAT AGCTTCCTGTGTTAAACTCGTGACGTCATTGTCTTATTTGTGGCTAGTTGCAAAGAGTCCTCTTTAATGTTAGGTGAAGG CTCATGAATACCTTCATCACGTCACTAACATCCTATAGATATATTTTGAGTGGAAATTACCAGAGACTTAGACTAATTGA TCTTTAAGCTTGTAGCAAATAGAAATTAGTGTCTTTTGGCTGTATTTCACCAACGTTTCTAGACTAGGATAATTACTATA TAGCTTAATACCAATTGCTCAGGGGTTCTGGTAGTGCTGGATGCTCGTCCTGATGGAATCATCTACAGAGATCTAATACC CGATTATGTAGATTTTGCAAGGACAATCTATGAAGGTTCTAGTTTCTATTTCTTTTCTATACCGCTAATTTGCGTAGACT GAAACTTAAATTTTTTGAGCTTTGAATCCTTTTCAGAAAGGTTGACTTTATTGTGCTATCACTTATTTTTCCTTGTAGAT GATCTAGGGAATTGTGCCGTTGATGTGAACTACTTGAATGTGGGATCTGAAACTGGAAATTATCAACTATTCATATGCTG ATGAAGTGATGCTATCACATGGTAAATGAAGATGGATATGATTGCAATGAAGATTGCATATGAAATTTATTCGAACTCTA GGTAAATTGTAGCTATGTTCAAGTGCTGTGTATGTCGATGCAAATTTATTAATTGGCCGTCAAACTCTATGCACTTCATT TGTGCAACAAATGTTGTTTGAGTTCTTTCACTTACTAAATTGAATTTGCACAGTCCGGCAGTAATCATGAATGATTTACT ACTTCGGTACTCCTAAACTTTTGATGGTTCTTATATAAGACTGATTAGAAAATTTTAGAAGTATTGTTTTGTATTTTTTG TTTGCCCTTTATACTTATTGAACCTTATAAATCCAAAGCTCTTTG
CDS sequence (LotjaGi1g1v0770600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACACCCCTCTCCTTCAATCTCTTTGGGGCTGGCAATTTTCCTCTCATTTTCCATTACGACGTCGTCACAACAACA CTCATCTTTTCCCTCAATAATCCCATTCTTCTCCAAACGTGACGACGCTCCTCTTTCGTTCAATCCAATCCCCAAAGCCA CTCCCTCAGACTTGTTATCTCTGTTAGGTTCCAATTCTCAGTCTCAAACCGTCAACCCCGCCGTAGCGCGCCACCTCAAG TCATGCCTCAAGTTCCTCGTTCCGTTTTCTCCGCCGGAGCCTCGTCATCGGAAATTGGGATTGGGCCGTGCCGGCACTAG TCTCACCGGCGCAACCGGTAGAGACACCGCGAACAACTTAATTTGGTTCCCGCCGGAGCCTGTTTTGGATCTGGCGCGCA TCGCCGTCGATTCCGGTGGTGATCCTGCTGCTATTCAACGCGCTCTTGACCCAACCATCATCCCAGTACCTGATGTTGAA GGATCAAACAAAAACCGTTGTCAACTCACCAGAACTCCCTATGGCAGACACTTCATTTCTCAGGAGTTGAACCTGTATCT TAAGTTTTTGTTTGAACTCATTGCTGATCGTGCTCCCTCTGTTGGGTTCAAGGTTAGCTTGAACCGGTTTGATTTGTTCC ACGGTCACATGTTTCTGGCAGTCGACACTGGAAGACTTGGTATATTATTCCATGCACGGGAATACCCCGCATATGATGAA CAAGTATTCCCGTACAATTTGGGTTTTTGTCAGAAAGGGACCAATGTGACATATGATGATTCCATGAACTTGAGAAATAT TCTCTGGCTGGCTCCATTACCTGGTGATTCTGCAAAATCTTGGTTGGCACCAGGGGTTCTGGTAGTGCTGGATGCTCGTC CTGATGGAATCATCTACAGAGATCTAATACCCGATTATGTAGATTTTGCAAGGACAATCTATGAAGATGATCTAGGGAAT TGTGCCGTTGATGTGAACTACTTGAATGTGGGATCTGAAACTGGAAATTATCAACTATTCATATGCTGA
Protein sequence (LotjaGi1g1v0770600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRHPSPSISLGLAIFLSFSITTSSQQHSSFPSIIPFFSKRDDAPLSFNPIPKATPSDLLSLLGSNSQSQTVNPAVARHLK SCLKFLVPFSPPEPRHRKLGLGRAGTSLTGATGRDTANNLIWFPPEPVLDLARIAVDSGGDPAAIQRALDPTIIPVPDVE GSNKNRCQLTRTPYGRHFISQELNLYLKFLFELIADRAPSVGFKVSLNRFDLFHGHMFLAVDTGRLGILFHAREYPAYDE QVFPYNLGFCQKGTNVTYDDSMNLRNILWLAPLPGDSAKSWLAPGVLVVLDARPDGIIYRDLIPDYVDFARTIYEDDLGN CAVDVNYLNVGSETGNYQLFIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 5 | 342 | 338 | 1.1E-154 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 342 | 319 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0770600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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