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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0772600 |
| Transcript ID | LotjaGi1g1v0772600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein VAR3, chloroplastic; TAIR: AT1G55040.1 zinc finger (Ran-binding) family protein; Swiss-Prot: sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic; TrEMBL-Plants: tr|I1NBZ0|I1NBZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134532986..134537613) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAACTGAAATTAAATTAATATTTTCCTTTCTACCTCATCAACCATCGCCTAATGTAAGTAGGGTTTAAGCATTTTGC ATAGCGTTTGCCATGGCGGTTTGAAGTTTCGCGGCGAAATGTAAACTCCGACCACCGTACACACTCTTCCGATCAACGAT GACGTACGGTCGTTTCTCTCTTCTTCTAACCAGACGCTTCTCTCTTTCTTCCCTAAACCCTAAATCCCCATTCTTCCTAA AACCCTACTCCACCATCCCAGACACTACCTCGAACCAGAACAACCCAAAACCCTCTTCCCTCTCCGCACGTCTCAGCTTC GTCTTCGACCAAATCGACGTCATTGAAAAAGAGCGCTCCCAAAAGCACGACACGCTTCAACGAATTCGCGCTTGGCGCGA ATCCAAAACCGCGCAAAACGACGTCGTTGTCACTCGCGAGCAGCCGGTACCGCCGGAACCAACAACTCCGGCGGCTTATG AAGTCATTAGCCCTGCGGAGGTGACGAAGAAGGAGGTGGAGCTGGTTCACCCGTGGCCGGAGTGGATTCAGTTGATGGAG AGGCTGGTGCACCAGAACTACTTTGACCACAAGAGGACGGATGAGGATAAAATGGTCCAGGATTTAGGGTTTGAACCTCC CAAGGTTGTAGATGATGCGGGGCTCGATTTTACGAAGGATTTGAAGAGCGTTCTCGAGGCGTGCCTCAATTTTGGGAGGG ACCGTTTCGATATTTTGAGGTTTGGTTCGTGCATTTCGGCGTATTGAATTCATTTTAATCGTGCAGTGTAATAGAATCAT ACAATAGCTGTTAGTGCTCTGTTTTGTTAACTACCGTGTGTACGGGGTTTTGTTGATTTGTATGATAAGTTTCCAACTGT TATGCTGAAATGCGAGATTGATTTCAGGTCCTTGTCGAGGCAGGATATTCAAATTTTGGTTGGTTTTGGATGCCCCACTG TGGACAAAAGAGTGGTTTTCTCTTCTAAAGTCTTAAGAAAGCATGTCCACCTTGACGAAGGAGATGTAAGTGTGACACAT TCTGTTTGGTGCTTGACACTGACATAACTGCCAAATAACCATTTTCTTAAGTGCTTTATAAATTTGTTGTTGTAGCGTTA TTTCAATTGTGAAAGTTTCTTTTTATGAATCCTTTGAATACATTTGGGTGGATGAAAGTGCTAGTGCATGGGAGCTTTGT TTGATATGATGGAAATGTGGAGCTTTTCAAACTACTCCCCTGCTGTGCTGAGAAGATATTTAAATTAGTAATTTCGTGTC TATATTTATGGTTGCTCCAAAGAAACTGAAATTTCATTGGCTGTGCTAGCAATTCTTTTTTATTTCTCTGACTCATTCAA TTGTCAATTTCTCTTTGTCTGACACCCCCTTTTTCTCATCTCTATTTTTTTTGTCTCCTTTATTCCATATCAAAAGTTAC TAATTTGAATATATAATTTGTATATTTTATGATAAAAATTCATTGATATCAGGTCTGCAGTTCCTGCATCTTGAGAAACA CTTGTGAGAAGGCATACCTGCTGACAAACAAAGAGGACGAGGCACGGACTATTGATGTCATGCGGCTCCTACTGACTTTT GGTTTTGATCCTATTAATGGATCGGTCGTCAATAAGTCACTTCTGAAGCAAAAGTCTGTCAGAACAGTGGTTCGTAAATT GCTTCATGAAGTTGTCAAGCTGAGTTCAGTTCCTATTGATCCCAATCTCTCTCCTCCTGTGTTTAAAAAGCCTCCCCCAA AAGTGAAGCAACCTCCTCCTCCTCCAAAGAGACGTGTTGGACGAGATGATATTGAGATGAAAAAAGGGGACTGGCTATGT CCTAAGTATGTCAATTGTATCTTTGTGATTTATTTGCGATTAATGAGCATTTGGTTTTACCACCTAGCTGCATGTTAGTT TCAAGTGAATTTTCTGCTAGAAAAAACTTTAACCCTTTATTATGCTTGTTACTCCCTGTAAACCAGATGAACCGATTTTT TTGGCATACCACTTGTACATTATTAGATTTTTTTTGTTTCTCCATTTGGTAATTGAAGATACTTGGTAATCATTGGTTAT AGATAAGTTGCTGTTGAATAATATGAAGTATGGTAGTTGATTTTCCCTGTTTTTGACTAATGATGCTAAGCATTTCTTAG GTGTGATTTCATGAATTTCGCAAAGAATAATGCTTGCCTACAGTGTGATGCGAAGCGTCCTAAGAGACAGTTGCTTCCAG GAGAATGGGAATGTCCCCAGTAAGTTAACTGTATTACTTATACAATTACATTTCGCTGGTCATTCTAACTAATCACATCC TGAAGTTTTGGAAGCATGACATTTTTATATGATTAAGATTGACTTGTATAGTTTTATCTGGCAGGTGCAACTTCTTGAAT TACAGGAGGAATGTGGTATGCTTTCATTGTGAGTGTAAACGTCCACCTGATGAATTTCTGGAGAATAAAATGCAAGATAG AAATCACAGTCCTAAACCTAAGTTTGATAAGATGGGCAGCCGACAAGAGGTTTCCAATGCCTGGAATTTCGACTTTGATG ACAATGAATCAGATGGTGCAGATGTTGCTGCTTTTGAGTATGCAGATGCCCATGCTATAGATGAAGATTTTCCTTCAGAT AACAATGCTCGGCGTGGAAATTATAAGGGACGGGAAGATGATTTTGAGAAAAACGGCAGACTGCAAGGGTCCCATGATGG AGAATATGCTAATCCTGATCATTCTAGACCTAGAATAGGGTTTGATGATTTTGAGGATGAGGATGATATAGATAGTTATG AGCTAGAAACTCAAAATAGTAGCACAAGAATGGAACCATCAAAAAATAATATTTCAGAAACTGAAGACTATTTGGAGTCA GAAGATTCTGATGACACTTATGATAAAATTCTTACACGTGACAAAACAGCTACTGGAAGAAGCAGACAGAACCGCTCAAT TCGCAAGAATACATCTTACACTGGATCCAAGGGTGATAAACTAGATTTTGATTCAGATGAAGAACTGTCTGTTCTTTCCA ATTTCAAATCTAGCCATGTTTCTGCTGCTGGCCAGAAAAGAAAAGACAGAGGTCCAACCAAGAAATTAAGCTTTGGTTCT GAATCTGATGTAGATGTTGGTGCTGGTTTATACTCTGATGAGGATGATGATTTAAATGAGTCATATGCATCCAGAAAGAA TAAAGGAAACAAGTTTGATCCATCTAGACAGAGTCAAGGGAGTGGACGTGATTCTGGGAGAAGGAACTTTACTAGAGACT GGGGGTCTGGATCTAGTGGTGGTCGCAGAGCAGATATGCTCAGTGATGATGATTTTGATGGACCATCCTCTTACAGGAAT GGTGACAGGAGGTCTGGATCTAGGGGTGGTCGTAGAGCAGATATGCTTAGTGATGATGATTTTGATGGATCATCCCAGCA ATCTTACAGGAATGGCAGAGGTGGTAGAGGATCAAGGGGAAATGACCGTAATTCGAAGAGTTTTGAAGATTTTGATGGAT CATCCCGACAATCTTACAGGAATGGTAGAGGTGGTTCACGGGGAAATGATCGTAATTTTGAAGATTTTGATGGATCATCC CGACAATCATACAGGAATGGTAGAGGTGGTTCACGGGGAAATGACCGTAATTTTGAAGATTTTGATGGATCATCCAGAAA ATCTTACAGGAATGGTGGAGGGTCACGGGGAAATGACCGTAATTTTGATGGATCATCCCGACAATCTTTCAGGGGTGGTA GAGGATCACGTGGAAATGGCCGTGGCAGGAAGAGTTTTGATGATTTTGATGGATCATCCCGACAATCTTATAGGAATGGT AGAGGGTCTCAAGGAAATGATCGTCCTAAGCGGAGATTTGAAGACAGGGAGCATGGCACAAGACATTTTGACAAATATAG TAAGGATGAGAAAGGTGCTGGTGAATTTAGAAATAGTAGGCGTGTGATTGAAAGATAGCACCATAGCTCCACGAACTCAG TTTGTTGTTGCAGATAACTGCTGCTGCTGATAGCCAAAGCCAAATGTGGTACAAGCCTCAAAAGGTCAGTGTGATTCATG GATTGTTTGTTGTTTAATTTCCATGAAAACGACCAGAGAGCAAAATCATGGATAAACTTTTCCCTTCCAATGTACCTATG CCACATGATTTGAGAAAAGATAACAAAGAGTTGGCTCGAAGTTAGGCGAATAAGTTATGTCTGTGTGGTACTATTCATCG GCAAAGTTAAATTGCCATATGTGAGCGGTTCTGCCCTGCCATTATGGATTTATCCAAAATATATTAGCCATGAAATAACC ATATTCTTTTTTCCTAATAAAAAAAAGTAAGCAATGATGTTTTTGTAACCAACAGTGTAGTTGTGCAGGATCATGAATTC GATAATTTTGAATGCAATATATATTTCACTCCTGTTATAGCATATTATATTTTCATTTTCATCTTTGGGGTCAATTAACA TGATACATTTGTAAACATATGAGGATGAGAATATTTCAGTGATTCTGGCGTTTGAAGTTTAAAGATAATAACGTTTTAGA GCAAAAACTCTGTTCAATTTCAGCAAGTTTTTTTTCCATAACTAATTAAAAGAATGCTGCTTGATTTA
CDS sequence (LotjaGi1g1v0772600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGTACGGTCGTTTCTCTCTTCTTCTAACCAGACGCTTCTCTCTTTCTTCCCTAAACCCTAAATCCCCATTCTTCCT AAAACCCTACTCCACCATCCCAGACACTACCTCGAACCAGAACAACCCAAAACCCTCTTCCCTCTCCGCACGTCTCAGCT TCGTCTTCGACCAAATCGACGTCATTGAAAAAGAGCGCTCCCAAAAGCACGACACGCTTCAACGAATTCGCGCTTGGCGC GAATCCAAAACCGCGCAAAACGACGTCGTTGTCACTCGCGAGCAGCCGGTACCGCCGGAACCAACAACTCCGGCGGCTTA TGAAGTCATTAGCCCTGCGGAGGTGACGAAGAAGGAGGTGGAGCTGGTTCACCCGTGGCCGGAGTGGATTCAGTTGATGG AGAGGCTGGTGCACCAGAACTACTTTGACCACAAGAGGACGGATGAGGATAAAATGGTCCAGGATTTAGGGTTTGAACCT CCCAAGGTTGTAGATGATGCGGGGCTCGATTTTACGAAGGATTTGAAGAGCGTTCTCGAGGCGTGCCTCAATTTTGGGAG GGACCGTTTCGATATTTTGAGGTCCTTGTCGAGGCAGGATATTCAAATTTTGGTTGGTTTTGGATGCCCCACTGTGGACA AAAGAGTGGTTTTCTCTTCTAAAGTCTTAAGAAAGCATGTCCACCTTGACGAAGGAGATGTCTGCAGTTCCTGCATCTTG AGAAACACTTGTGAGAAGGCATACCTGCTGACAAACAAAGAGGACGAGGCACGGACTATTGATGTCATGCGGCTCCTACT GACTTTTGGTTTTGATCCTATTAATGGATCGGTCGTCAATAAGTCACTTCTGAAGCAAAAGTCTGTCAGAACAGTGGTTC GTAAATTGCTTCATGAAGTTGTCAAGCTGAGTTCAGTTCCTATTGATCCCAATCTCTCTCCTCCTGTGTTTAAAAAGCCT CCCCCAAAAGTGAAGCAACCTCCTCCTCCTCCAAAGAGACGTGTTGGACGAGATGATATTGAGATGAAAAAAGGGGACTG GCTATGTCCTAAGTGTGATTTCATGAATTTCGCAAAGAATAATGCTTGCCTACAGTGTGATGCGAAGCGTCCTAAGAGAC AGTTGCTTCCAGGAGAATGGGAATGTCCCCAGTGCAACTTCTTGAATTACAGGAGGAATGTGGTATGCTTTCATTGTGAG TGTAAACGTCCACCTGATGAATTTCTGGAGAATAAAATGCAAGATAGAAATCACAGTCCTAAACCTAAGTTTGATAAGAT GGGCAGCCGACAAGAGGTTTCCAATGCCTGGAATTTCGACTTTGATGACAATGAATCAGATGGTGCAGATGTTGCTGCTT TTGAGTATGCAGATGCCCATGCTATAGATGAAGATTTTCCTTCAGATAACAATGCTCGGCGTGGAAATTATAAGGGACGG GAAGATGATTTTGAGAAAAACGGCAGACTGCAAGGGTCCCATGATGGAGAATATGCTAATCCTGATCATTCTAGACCTAG AATAGGGTTTGATGATTTTGAGGATGAGGATGATATAGATAGTTATGAGCTAGAAACTCAAAATAGTAGCACAAGAATGG AACCATCAAAAAATAATATTTCAGAAACTGAAGACTATTTGGAGTCAGAAGATTCTGATGACACTTATGATAAAATTCTT ACACGTGACAAAACAGCTACTGGAAGAAGCAGACAGAACCGCTCAATTCGCAAGAATACATCTTACACTGGATCCAAGGG TGATAAACTAGATTTTGATTCAGATGAAGAACTGTCTGTTCTTTCCAATTTCAAATCTAGCCATGTTTCTGCTGCTGGCC AGAAAAGAAAAGACAGAGGTCCAACCAAGAAATTAAGCTTTGGTTCTGAATCTGATGTAGATGTTGGTGCTGGTTTATAC TCTGATGAGGATGATGATTTAAATGAGTCATATGCATCCAGAAAGAATAAAGGAAACAAGTTTGATCCATCTAGACAGAG TCAAGGGAGTGGACGTGATTCTGGGAGAAGGAACTTTACTAGAGACTGGGGGTCTGGATCTAGTGGTGGTCGCAGAGCAG ATATGCTCAGTGATGATGATTTTGATGGACCATCCTCTTACAGGAATGGTGACAGGAGGTCTGGATCTAGGGGTGGTCGT AGAGCAGATATGCTTAGTGATGATGATTTTGATGGATCATCCCAGCAATCTTACAGGAATGGCAGAGGTGGTAGAGGATC AAGGGGAAATGACCGTAATTCGAAGAGTTTTGAAGATTTTGATGGATCATCCCGACAATCTTACAGGAATGGTAGAGGTG GTTCACGGGGAAATGATCGTAATTTTGAAGATTTTGATGGATCATCCCGACAATCATACAGGAATGGTAGAGGTGGTTCA CGGGGAAATGACCGTAATTTTGAAGATTTTGATGGATCATCCAGAAAATCTTACAGGAATGGTGGAGGGTCACGGGGAAA TGACCGTAATTTTGATGGATCATCCCGACAATCTTTCAGGGGTGGTAGAGGATCACGTGGAAATGGCCGTGGCAGGAAGA GTTTTGATGATTTTGATGGATCATCCCGACAATCTTATAGGAATGGTAGAGGGTCTCAAGGAAATGATCGTCCTAAGCGG AGATTTGAAGACAGGGAGCATGGCACAAGACATTTTGACAAATATAGTAAGGATGAGAAAGGTGCTGGTGAATTTAGAAA TAGTAGGCGTGTGATTGAAAGATAG
Protein sequence (LotjaGi1g1v0772600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTYGRFSLLLTRRFSLSSLNPKSPFFLKPYSTIPDTTSNQNNPKPSSLSARLSFVFDQIDVIEKERSQKHDTLQRIRAWR ESKTAQNDVVVTREQPVPPEPTTPAAYEVISPAEVTKKEVELVHPWPEWIQLMERLVHQNYFDHKRTDEDKMVQDLGFEP PKVVDDAGLDFTKDLKSVLEACLNFGRDRFDILRSLSRQDIQILVGFGCPTVDKRVVFSSKVLRKHVHLDEGDVCSSCIL RNTCEKAYLLTNKEDEARTIDVMRLLLTFGFDPINGSVVNKSLLKQKSVRTVVRKLLHEVVKLSSVPIDPNLSPPVFKKP PPKVKQPPPPPKRRVGRDDIEMKKGDWLCPKCDFMNFAKNNACLQCDAKRPKRQLLPGEWECPQCNFLNYRRNVVCFHCE CKRPPDEFLENKMQDRNHSPKPKFDKMGSRQEVSNAWNFDFDDNESDGADVAAFEYADAHAIDEDFPSDNNARRGNYKGR EDDFEKNGRLQGSHDGEYANPDHSRPRIGFDDFEDEDDIDSYELETQNSSTRMEPSKNNISETEDYLESEDSDDTYDKIL TRDKTATGRSRQNRSIRKNTSYTGSKGDKLDFDSDEELSVLSNFKSSHVSAAGQKRKDRGPTKKLSFGSESDVDVGAGLY SDEDDDLNESYASRKNKGNKFDPSRQSQGSGRDSGRRNFTRDWGSGSSGGRRADMLSDDDFDGPSSYRNGDRRSGSRGGR RADMLSDDDFDGSSQQSYRNGRGGRGSRGNDRNSKSFEDFDGSSRQSYRNGRGGSRGNDRNFEDFDGSSRQSYRNGRGGS RGNDRNFEDFDGSSRKSYRNGGGSRGNDRNFDGSSRQSFRGGRGSRGNGRGRKSFDDFDGSSRQSYRNGRGSQGNDRPKR RFEDREHGTRHFDKYSKDEKGAGEFRNSRRVIER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 818 | 815 | 0.0 | – | |
| PANTHER | 4 | 818 | 815 | 0.0 | – | |
| MobiDBLite | 312 | 338 | 27 | - | – | |
| MobiDBLite | 313 | 329 | 17 | - | – | |
| Gene3D | 334 | 375 | 42 | 3.9E-11 | – | |
| SUPERFAMILY | 336 | 372 | 37 | 2.88E-7 | ||
| Pfam | 343 | 371 | 29 | 1.4E-9 | ||
| ProSiteProfiles | 343 | 372 | 30 | 10.207 | ||
| SMART | 345 | 369 | 25 | 1.4E-5 | ||
| ProSitePatterns | 347 | 366 | 20 | - | ||
| Gene3D | 376 | 408 | 33 | 1.5E-6 | – | |
| ProSiteProfiles | 376 | 405 | 30 | 9.315 | ||
| Pfam | 377 | 404 | 28 | 3.4E-4 | ||
| SMART | 378 | 402 | 25 | 0.048 | ||
| ProSitePatterns | 380 | 399 | 20 | - | ||
| MobiDBLite | 464 | 512 | 49 | - | – | |
| MobiDBLite | 464 | 914 | 451 | - | – | |
| MobiDBLite | 553 | 570 | 18 | - | – | |
| MobiDBLite | 572 | 587 | 16 | - | – | |
| MobiDBLite | 611 | 625 | 15 | - | – | |
| MobiDBLite | 647 | 661 | 15 | - | – | |
| MobiDBLite | 662 | 685 | 24 | - | – | |
| MobiDBLite | 693 | 728 | 36 | - | – | |
| MobiDBLite | 729 | 743 | 15 | - | – | |
| MobiDBLite | 745 | 759 | 15 | - | – | |
| MobiDBLite | 760 | 774 | 15 | - | – | |
| MobiDBLite | 801 | 815 | 15 | - | – | |
| MobiDBLite | 817 | 842 | 26 | - | – | |
| MobiDBLite | 873 | 914 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0772600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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