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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0775000 |
Transcript ID | LotjaGi1g1v0775000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT5G19090.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|F4JZL7|HIP33_ARATH Heavy metal-associated isoprenylated plant protein 33; TrEMBL-Plants: tr|K7KGQ2|K7KGQ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0775000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134708717..134711071) extracted from Lotus japonicus Gifu genome v1.2.
CTTGGTGGCTGGAGGTTTCACAACCGCCCTTTTATATGAAAGCCAACTCACACAAATTCCTCAGAATAAACAGTACGGAA ACTTGAGCCTGCAGAGTCCTAAAACAAAAAGGAACAGATAAGTGTTACGGTGTTATGTCGACTAACCGACTTTGCTACTT TCACAAAACCTTATATACATACCAACCACTCTTCTCTGCTAATTCACACTTTTCTCTCTAACTGAAACCTTCATTATATT TTCCTTTCGGTACCTATCAACTGGTGATTAAGGATGAGTATACCACAGGACTCTCTGAAAATTCAGGTACACACTCTCTA ATATGAATTATGTTTTATTTGTCTTTTGTTTTGTTGATTCCTGGAGTGATAGTTTTGGCTATTGAGCATGCAACTGATAT ATGTGTTGGTTTTGATTTCTTTTGTAGACTTGTATTCTCAAGGTTAATATCCGCTGTAAATGTGAAGGCTGTGAGCACAA AGTAAAGAAACTGCTGCAGAAAGTCGATGGTACATACTACATAACATACCTTCTTAGCACACAAGCCCTCCTCTATTTTG TTTTTCTTTTTTTTCAAAATTTCTAACATGATTCATCTTTGAACTTTACCATGTCAATTTACATTTCTCAGTTTAATTAG ATATATTTAATGACTTAAGAAGTAAGAAAGTTTGCAACTACTTTGTTTTGTTTTTATTCCAATTAATTTTGGTGAACTAG ATTTTATGTAGTTTGCTTAATTTTGTTGTTAAAAATGGATTCTCTGTTTTTTCAGGGGTGTTTTCTGTGAAAGTAGATGC AGAGCAAGGGAAAGTGCTGGTGGCAGGTGATGTGGATCCAGCCAAACTCATAAAAAAGCTCAAGAGGTCAGGGAAACATG CTGAGATATGGGGTGGCCAGAAAGGTGTGATGATGTCCAATCAAAACAATCCCAACATTAACCATCAATTTCAGAACTTG CAAGTTGTTGATAATAGCAGCAAGAAAGGGGGAAAGGACAAGAAGGTTCAGAAAGTTGTTGGTGGTGTCCAAGGTCAAGT AGCACAATTCCAAAACTTCAAAGGGGTTCAGGCTCAGGATCTTAAGGTACCCCCAAAAGAACACAAAGCTGTCAAATTCA GCTTGCCAGAGGAGGATTTTGATGGGAGTGATTATGGTTCTGATGATGGATTTGAAGACAATTTTGGTGATTATAGTGAA GAGGAGGAGGAAGGGTATGGGGATAAACATCCTGTTAAGAACAAGAAGCTGCTGCCTGTGATGGGGAATGTTAGTGGGCC TCATGGGCCTATCATGAATGCCCATAAAGTCAATAGTGGTGGGCCTCATGGGCATTCTGGTATGATGAATGGGCCTGCCA TCAATAACCATAAAGGAAATGGTGGTGGGGTTGGGATTAAACATGATGTCATTAATTTGGCAATGCAAAGCAAGGGCAAA GGTGGAAATTCATTTGAGGCTAAAAATGGCATCAAAGAAGGAATGAAATTGAAAAGCAATGTGGACCCAAGAGGTGTGAA AGACAACAAGGTGGAAAAGCAGAAGAAAATGAATGGGAAAAGTGAGGGTGGTATGCTAGGTCGGTTTCTAGGCATTGGGA AAAAGAGCAACAAGGGAGAAAGTGGAGGGAAATTGAGCAAGCATGAGAGTGAAAATGTACATAACAAAGGCAAGGAAGAG AAAAAGGGTGGAGGGAAATTGAAGGGTCATGGTAACAATGATATGAGTAAAAATGACATTGACTCTGAATTTGGTGACTA TGACCATATCCCTCATCATGGTAAAAGTGGCAAGGGCAGTAATGGCAATGGTAATGGAAACATGGGCCAGATGGGTATTA ATTATCCGGTGGATCAAATGAGGAATATTGCGGCGGCTCAGGGGCTTCCGGCGGTGAATGGCGGCGGTAGTGGTTATTAT CAAGGGATGCAAATGCAACCTCCTTCATATCAGCAACATCAAGCAAATATACACCCACAAGATATGATGTATAATAGGCC ACATCCGTCGATGAACAACTACATGATGCCACCACCACCGATGCCGTCTCACCCCATGTCAGATCCTATGACACACACAT TCAGTGATGAGAATGTTGAGAGCTGCAGTATCATGTAAAATTGAATTACAATTTCAGTTATGTCTTTATTTTTGCAGTTC ATGAAATTTTGTGTAGGGCAACAAAATGTGAAATGTTTAGAACTATATAATGATATTTAAGTTTGTTTTTTTTTTGCTCC TGTTTTGTTCAATGGAAATTTCAGTTGTACATTGTTTATCTAATGGAATTTTCACTTGCAATTGAAGTGAGAAAAAAAAA TCCAATGCTCGAGAGATTCCATGGACTGTGTACCC
CDS sequence (LotjaGi1g1v0775000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATACCACAGGACTCTCTGAAAATTCAGACTTGTATTCTCAAGGTTAATATCCGCTGTAAATGTGAAGGCTGTGA GCACAAAGTAAAGAAACTGCTGCAGAAAGTCGATGGGGTGTTTTCTGTGAAAGTAGATGCAGAGCAAGGGAAAGTGCTGG TGGCAGGTGATGTGGATCCAGCCAAACTCATAAAAAAGCTCAAGAGGTCAGGGAAACATGCTGAGATATGGGGTGGCCAG AAAGGTGTGATGATGTCCAATCAAAACAATCCCAACATTAACCATCAATTTCAGAACTTGCAAGTTGTTGATAATAGCAG CAAGAAAGGGGGAAAGGACAAGAAGGTTCAGAAAGTTGTTGGTGGTGTCCAAGGTCAAGTAGCACAATTCCAAAACTTCA AAGGGGTTCAGGCTCAGGATCTTAAGGTACCCCCAAAAGAACACAAAGCTGTCAAATTCAGCTTGCCAGAGGAGGATTTT GATGGGAGTGATTATGGTTCTGATGATGGATTTGAAGACAATTTTGGTGATTATAGTGAAGAGGAGGAGGAAGGGTATGG GGATAAACATCCTGTTAAGAACAAGAAGCTGCTGCCTGTGATGGGGAATGTTAGTGGGCCTCATGGGCCTATCATGAATG CCCATAAAGTCAATAGTGGTGGGCCTCATGGGCATTCTGGTATGATGAATGGGCCTGCCATCAATAACCATAAAGGAAAT GGTGGTGGGGTTGGGATTAAACATGATGTCATTAATTTGGCAATGCAAAGCAAGGGCAAAGGTGGAAATTCATTTGAGGC TAAAAATGGCATCAAAGAAGGAATGAAATTGAAAAGCAATGTGGACCCAAGAGGTGTGAAAGACAACAAGGTGGAAAAGC AGAAGAAAATGAATGGGAAAAGTGAGGGTGGTATGCTAGGTCGGTTTCTAGGCATTGGGAAAAAGAGCAACAAGGGAGAA AGTGGAGGGAAATTGAGCAAGCATGAGAGTGAAAATGTACATAACAAAGGCAAGGAAGAGAAAAAGGGTGGAGGGAAATT GAAGGGTCATGGTAACAATGATATGAGTAAAAATGACATTGACTCTGAATTTGGTGACTATGACCATATCCCTCATCATG GTAAAAGTGGCAAGGGCAGTAATGGCAATGGTAATGGAAACATGGGCCAGATGGGTATTAATTATCCGGTGGATCAAATG AGGAATATTGCGGCGGCTCAGGGGCTTCCGGCGGTGAATGGCGGCGGTAGTGGTTATTATCAAGGGATGCAAATGCAACC TCCTTCATATCAGCAACATCAAGCAAATATACACCCACAAGATATGATGTATAATAGGCCACATCCGTCGATGAACAACT ACATGATGCCACCACCACCGATGCCGTCTCACCCCATGTCAGATCCTATGACACACACATTCAGTGATGAGAATGTTGAG AGCTGCAGTATCATGTAA
Protein sequence (LotjaGi1g1v0775000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIPQDSLKIQTCILKVNIRCKCEGCEHKVKKLLQKVDGVFSVKVDAEQGKVLVAGDVDPAKLIKKLKRSGKHAEIWGGQ KGVMMSNQNNPNINHQFQNLQVVDNSSKKGGKDKKVQKVVGGVQGQVAQFQNFKGVQAQDLKVPPKEHKAVKFSLPEEDF DGSDYGSDDGFEDNFGDYSEEEEEGYGDKHPVKNKKLLPVMGNVSGPHGPIMNAHKVNSGGPHGHSGMMNGPAINNHKGN GGGVGIKHDVINLAMQSKGKGGNSFEAKNGIKEGMKLKSNVDPRGVKDNKVEKQKKMNGKSEGGMLGRFLGIGKKSNKGE SGGKLSKHESENVHNKGKEEKKGGGKLKGHGNNDMSKNDIDSEFGDYDHIPHHGKSGKGSNGNGNGNMGQMGINYPVDQM RNIAAAQGLPAVNGGGSGYYQGMQMQPPSYQQHQANIHPQDMMYNRPHPSMNNYMMPPPPMPSHPMSDPMTHTFSDENVE SCSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 485 | 485 | 9.3E-76 | – | |
PANTHER | 1 | 485 | 485 | 9.3E-76 | – | |
Gene3D | 10 | 78 | 69 | 7.3E-17 | – | |
Pfam | 22 | 73 | 52 | 8.5E-11 | ||
SUPERFAMILY | 22 | 78 | 57 | 3.01E-14 | ||
ProSiteProfiles | 23 | 76 | 54 | 12.22 | ||
CDD | 23 | 75 | 53 | 1.17899E-13 | ||
MobiDBLite | 278 | 299 | 22 | - | – | |
MobiDBLite | 278 | 388 | 111 | - | – | |
MobiDBLite | 320 | 375 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0775000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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