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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0777500 |
| Transcript ID | LotjaGi1g1v0777500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Double stranded RNA binding protein 3; TAIR: AT3G26932.1 dsRNA-binding protein 3; Swiss-Prot: sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2; TrEMBL-Plants: tr|A0A151TXG6|A0A151TXG6_CAJCA Ribonuclease 3; Found in the gene: LotjaGi1g1v0777500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134960984..134965376) extracted from Lotus japonicus Gifu genome v1.2.
CCCGACTCTCCGGATATTGCAAACAAAACAAAAAAGTTAGTTGAAATTGCAATATATCCCACTTTCACTGTTCACTATTA TCATTATCATCGAGTTTCCTTCAACCTTTCCGTCACTTTCACTCTGGCTGAAGGTTTTCACTCTGCCCAATATTGAATTT CAATTCGACCTCCAACTCTGCCTCTCCTTGCTCTCTCACACTCAGATCCTCTCGCACTAGGTTTGAAAAGGTATGATTTG ATGCTTGATGCTTTCTTACTTATCTATCAACATTCTTTCAGTTTTATCAGTGCAATTTCTGAACTGTTTGCGTGTGAATG GGCTCTGATCATGGTGAATATTGGTTCAATGAGTAGTTTTGTTGGTGCTGTGTGAATTTGATGACAATGTTTTGCCAAAA TGATTGAACTGCTTCACCAGCTGTTACTTCCTTTTCGGTGTTTCTGAGGGTTTTTGTGTGGGACTGTGATTTAACATCTG ACACTTGTTTGGTGTATTTTTTGCCCTTGTTACTAGGTTAGTTAAAATGATGACTCTGTCTGTCTATGTAAATTGTTGGA ATAAGCTGAAAATGAGCCCGTTTCGATTGATGCGGGCCAAAGAGCACTTATTCGAGCTTATTTAGTGCATTGTTTTTGTA GCGAAACTCCAATTAGTGTTTTTTGGTCCGTACCCAAACGGGCTCAATAGGTGAAATTCATGTAGTTTCATTGCGGCCTC GCCGGTAATAATTTATTATTTAGTCGAGTTTATTTAACTATCAACTTGTTTGGTTAGACTTTCACATGCACTTCAAGTTA AATATGAATGGAACTCTTCCTATGGATTGAGTTGAAGTTCGTTCCCGTTGCACTCAACTGGCATACACACAAAGTCTTGT TAGGCTGTTATGACTTATGAATATTGCTCAGTTTCTGTTATCTTGCAGACTTAATTTTTAATAGTCTCCCTCTAAGTATG CTCACACACACAAATCAATTATGGGGGATGGTGTTATGTGGATGAAGAATATACTTTATCTTTGATGTAATTATGGACAA TTTTGAGAATTTTTTATGTTTCAGATATTCTTTTCCTGCCCGTTTAATATTGAATTCTTTCATCTCGTGTAGTTGAAGAG ATTTCCTTGTTTTGGTCTTAGTCTAGGTTGTTAGGCAGATATGAGTTTTTTTTTATTCAATAAAAGAGAGAAAGAGTTGT GGTGGATGGTATTACGTAATATGTTAGTATGTGATAAATTCTTTCCTGTATTCCCTGACAGTATTGCTTTCATATTTAAT TATTGCTAGAACAAGATAGAATCTTTTAAGGGGTGAAATGTTCATGCACATAACTAGTTTGCTAGATTAACCAAAGTTTA TTGCTCCTTCCCTCTACTCCTCTTGGTTACATACTTACATCATGAATATTTAAATTTCTTTTTAACTAAAGCCCCTGGGT TCATTTTTGTGCAGACATGTATAAGAACCGGTTGCAAGAATTGGCTCAAAGAAGCTGTTTTAATCTGCCAGCCTATTCAT GCATCCGCGAAGGGCCAGATCATGCTCCTCGTTTCAAGGCAACTGTCAACTTTAATGGAGAGGCATTTGAAAGCCCAACA TTTTGCTCTACTCTTAGACAGGCAGAACATGCAGCAGCAGAGGTAGCTCTTAACACATTTGCAGAAAGAGGTCCCTCCAG AGCTTTGGCAGCAAGAGTTCTGGTGAGCAGTTTGGAAAGTTTTATCATCATCTTGAGTCAATTTCATGTTTTGGCTCTCA TCCCATAAAAAAAAATCATTGGTTAAATGTCTGCTTCTATTTCTTTAACCTCTCTGTGCGCTTGGTGAAAATGCTAACCA CGAACATGAGAAGGCCAAGTATACATTTCCATTTAGGTCTTCTCTGCATTTCCCAATACTGTTGTTGTTATTTCAATACA TTCTAATGTTGTTGTTCCCTTTTTATCATCTTTTGTAGTGTTCTACTTTTACCTCCAATGATTTAGTGGATGTCTGATTC ATTAAATTAAATGTTTCTACAACCAAATGGATTAAATGAATCAAAGAATTTAAGATTAAGAAAATAACCTTTTACCTCAT GTTAGGAATCTCAACTCTAAAGAATACTGGATTTTTTTATCTCATTGCATTAAATTTTGTTGTTGTGCTTTCCATGTCTT TTGTCTTTCCCCTTCCCTTCTAGGAAAGGGGAGAAGAAGTGGAATAGGATCAATTATGTTCACCCCTTCATTAAATTCTT CTGTTAAAAGATTGAGTTTTTTTTTTTTTTCCTTTTTTCATTTGAAAGTTTTCCCTTTAAATATGCTTTGGTGGTTGGAT GTTGACAGGATGAAACAGGAGTATACAAGAACTTGCTCCAGGAAACTGCTCACAGAGCTGGACTGAATCTTCCTGTTTAT ACAACTATTCGTTCTGGACCAGGTCATGTTCCTAACTACTCATGTACTGTTGAGATTGCTGGAATGCATTTTACTGGAGA CCCTGCTAGGACCAAGAAACAGGCTCAGAAAAATGCTGCAATGGCTGCTTGGTCTGCATTGAGAAAATGTGAGCATTTTG CGGCTGTAATCGCATCTTTCTCATATTTACATTAGCAATTTGGATTCTGCACTTGAAACATTCTCTGTGGAGTTTTCAAT ATACATTTTTAAAATAAAATAAAAAACAATTATATGGCTTATGCATTGAGAAAATGTGAGCATTTTGCGGCGGTAATCGC ATCTTTCTCATATGTACATTAGCAATTTGGATTCTGCATTTGAAACATTCTCTGTGGAGTTTTCAATATACATTTTTTAA AATAAAATAAAAAACAATTATATGGCTTATGCTTCCTCTTTTCGTCCCATGACTTACTTTATAGTCTATTTGTTTTGAAT TGCTTTGTAGTGCCACGGCTTCATTTATCTTCTTCAGAGTCTAAAGGCAATGAAGAACAAGAACAAGTCATCATTGCTAG GGTACTTGCAAGTTTACATCCATGTAGGTCAAAAAACTTTTCTGAAAGTGATCATCAACATAGGTACCAAAACTCCTCCT CAACCAAGGTCCAGCCAACTCTAGGGATGTATCCCCCGCAATGGCAGCATTGTGGAATCTCTAGTTTCTCTCCTGATTTG ACTCTATATCAGATTTGGCAGCAAGAACAAATTATGCAGCAACAAAATAGCCTATTGGCACTAACCATTCAACCAATTAT TCCATCTCCTCCCCAGATTTATCCATTAGTACAGTCTGTCCTTCAGCCAGATCACTGCCATTATTTTCCACCTAGAGAGT TAGCATCAGTTCCTGTGGGACCAAGATTCTCTATTGCTGCATCAAGGCCTTCATTTTACTTTTCAAACCAAATTGTTCCT GAGCTAAACAGGGGCAGGTCAACAGTAACCATTAGAGAGATACAAGAGGAGAAAGTAGAAGATCCCTCAGTTTGCAACTT TAGCAATGAAACAAGAGTCCCAACAGAAGATGAGAGACAGAAGCATGGCTCTGGAAGCAGAAGAAGAAATGCAGAGTTGG TAGGAGAACAAAGTGGGAAATCTGAGTGGGATTCTCATAGGAACATTGGATCTATACACAAACCAGCTAATATTGAGCTG CAAAACTCATCCAATATTGACACCTCTGTTCCCAGAGGACATTTGCAAGCAAGCTTCAACAGAAGTTTTAGATCGCGAGC AGTTTCATCTTCCATGGTGAGAACTATGGCCCCTACTTCGCCTCCAGGATCCAGACCGCGACATCCGGAAGTACCTCTGG CTGTTGCTTCAAGGTTGAGAACTGGAGTTCCACGAAGTCCAGGCATGCCAACCTCTGAAAGGCTTGGCATGTCTCCTACT TCTTTATTCACGGCCCCGCCTGTGCGAATCCGATCAGTAGTTCCAGTCTGCTCAGCTCCTCCAGGGAGATCAATAGCAGA GGTATCCAAAAGCAAGGAAAAAGAAGATTTAAAACTTGAAGACAAAGAGTTGTCAAGAACAAGCTCTGAGCTTGGCCATC TTAGATTATAAGTACACATACAATAGAATAGAGGTAAAAATAATAAGTCTTGTTCAAGTCAAATAGTTTACTCTGTAGGC ATAGTAAAAAAAGGCTTGTATTTGACAAGGAAAAACACTTATTATATACATTGCCGGGTAGGTTTGAGAACACAAATAAT CATCCCCCACCCATTTTAAGATAGCCATTTTCATTTTTTACTTTTAACTGCGTTGATACTTTATCGTAATACAATTCTCG TCCATCCTATTTACAAGGTCTAGCGTAAATTAATGGTTTAGTATATGCGTGGGTGGTTGAGTGCTTCTTATTCATGTTTT TTTGTTAATTATCTAGCTAGAACAGAAGAACTAATTTATGTGGTACAAATTTAACATGTTAAGTTAGGCGCTG
CDS sequence (LotjaGi1g1v0777500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAAGAACCGGTTGCAAGAATTGGCTCAAAGAAGCTGTTTTAATCTGCCAGCCTATTCATGCATCCGCGAAGGGCC AGATCATGCTCCTCGTTTCAAGGCAACTGTCAACTTTAATGGAGAGGCATTTGAAAGCCCAACATTTTGCTCTACTCTTA GACAGGCAGAACATGCAGCAGCAGAGGTAGCTCTTAACACATTTGCAGAAAGAGGTCCCTCCAGAGCTTTGGCAGCAAGA GTTCTGGATGAAACAGGAGTATACAAGAACTTGCTCCAGGAAACTGCTCACAGAGCTGGACTGAATCTTCCTGTTTATAC AACTATTCGTTCTGGACCAGGTCATGTTCCTAACTACTCATGTACTGTTGAGATTGCTGGAATGCATTTTACTGGAGACC CTGCTAGGACCAAGAAACAGGCTCAGAAAAATGCTGCAATGGCTGCTTGGTCTGCATTGAGAAAATTGCCACGGCTTCAT TTATCTTCTTCAGAGTCTAAAGGCAATGAAGAACAAGAACAAGTCATCATTGCTAGGGTACTTGCAAGTTTACATCCATG TAGGTCAAAAAACTTTTCTGAAAGTGATCATCAACATAGGTACCAAAACTCCTCCTCAACCAAGGTCCAGCCAACTCTAG GGATGTATCCCCCGCAATGGCAGCATTGTGGAATCTCTAGTTTCTCTCCTGATTTGACTCTATATCAGATTTGGCAGCAA GAACAAATTATGCAGCAACAAAATAGCCTATTGGCACTAACCATTCAACCAATTATTCCATCTCCTCCCCAGATTTATCC ATTAGTACAGTCTGTCCTTCAGCCAGATCACTGCCATTATTTTCCACCTAGAGAGTTAGCATCAGTTCCTGTGGGACCAA GATTCTCTATTGCTGCATCAAGGCCTTCATTTTACTTTTCAAACCAAATTGTTCCTGAGCTAAACAGGGGCAGGTCAACA GTAACCATTAGAGAGATACAAGAGGAGAAAGTAGAAGATCCCTCAGTTTGCAACTTTAGCAATGAAACAAGAGTCCCAAC AGAAGATGAGAGACAGAAGCATGGCTCTGGAAGCAGAAGAAGAAATGCAGAGTTGGTAGGAGAACAAAGTGGGAAATCTG AGTGGGATTCTCATAGGAACATTGGATCTATACACAAACCAGCTAATATTGAGCTGCAAAACTCATCCAATATTGACACC TCTGTTCCCAGAGGACATTTGCAAGCAAGCTTCAACAGAAGTTTTAGATCGCGAGCAGTTTCATCTTCCATGGTGAGAAC TATGGCCCCTACTTCGCCTCCAGGATCCAGACCGCGACATCCGGAAGTACCTCTGGCTGTTGCTTCAAGGTTGAGAACTG GAGTTCCACGAAGTCCAGGCATGCCAACCTCTGAAAGGCTTGGCATGTCTCCTACTTCTTTATTCACGGCCCCGCCTGTG CGAATCCGATCAGTAGTTCCAGTCTGCTCAGCTCCTCCAGGGAGATCAATAGCAGAGGTATCCAAAAGCAAGGAAAAAGA AGATTTAAAACTTGAAGACAAAGAGTTGTCAAGAACAAGCTCTGAGCTTGGCCATCTTAGATTATAA
Protein sequence (LotjaGi1g1v0777500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAAEVALNTFAERGPSRALAAR VLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYSCTVEIAGMHFTGDPARTKKQAQKNAAMAAWSALRKLPRLH LSSSESKGNEEQEQVIIARVLASLHPCRSKNFSESDHQHRYQNSSSTKVQPTLGMYPPQWQHCGISSFSPDLTLYQIWQQ EQIMQQQNSLLALTIQPIIPSPPQIYPLVQSVLQPDHCHYFPPRELASVPVGPRFSIAASRPSFYFSNQIVPELNRGRST VTIREIQEEKVEDPSVCNFSNETRVPTEDERQKHGSGSRRRNAELVGEQSGKSEWDSHRNIGSIHKPANIELQNSSNIDT SVPRGHLQASFNRSFRSRAVSSSMVRTMAPTSPPGSRPRHPEVPLAVASRLRTGVPRSPGMPTSERLGMSPTSLFTAPPV RIRSVVPVCSAPPGRSIAEVSKSKEKEDLKLEDKELSRTSSELGHLRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 68 | 68 | 5.7E-23 | – | |
| PANTHER | 1 | 526 | 526 | 1.4E-135 | – | |
| PANTHER | 1 | 526 | 526 | 1.4E-135 | – | |
| ProSiteProfiles | 1 | 70 | 70 | 11.334 | ||
| CDD | 2 | 66 | 65 | 1.61948E-17 | ||
| SMART | 2 | 69 | 68 | 2.1E-18 | ||
| Pfam | 2 | 66 | 65 | 4.2E-14 | ||
| SUPERFAMILY | 2 | 68 | 67 | 2.83E-17 | – | |
| Gene3D | 81 | 154 | 74 | 1.2E-21 | – | |
| ProSiteProfiles | 87 | 155 | 69 | 11.189 | ||
| Pfam | 88 | 153 | 66 | 3.9E-14 | ||
| CDD | 88 | 153 | 66 | 1.73398E-17 | ||
| SUPERFAMILY | 88 | 169 | 82 | 4.24E-19 | – | |
| SMART | 88 | 154 | 67 | 4.1E-18 | ||
| MobiDBLite | 332 | 379 | 48 | - | – | |
| MobiDBLite | 344 | 379 | 36 | - | – | |
| MobiDBLite | 422 | 442 | 21 | - | – | |
| MobiDBLite | 453 | 472 | 20 | - | – | |
| MobiDBLite | 490 | 528 | 39 | - | – | |
| MobiDBLite | 499 | 528 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0777500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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