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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014720
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 80 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.040s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004279.1
n.a. ATP-dependent RNA helicase A-like protein, partial [Medicago truncatula] gi|358348435|ref|XP_003638252.1| chr0 1510915 1512214 -
5 domain predictions
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Lj0g3v0041629.1
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
4 domain predictions
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Lj0g3v0041629.2
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
4 domain predictions
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Lj0g3v0089409.1
n.a. PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|359488195|ref|XP_002272597.2| chr0 36680267 36682470 +
3 domain predictions
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Lj0g3v0168359.1
n.a. PREDICTED: double-stranded RNA-binding protein 1-like [Cicer arietinum] gi|502091969|ref|XP_004489681.1| chr0 80258662 80263798 -
5 domain predictions
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Lj0g3v0230349.1
n.a. PREDICTED: double-stranded RNA-binding protein 1-like [Cicer arietinum] gi|502091969|ref|XP_004489681.1| chr0 119272644 119286017 -
5 domain predictions
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Lj0g3v0230349.2
n.a. PREDICTED: double-stranded RNA-binding protein 1-like [Cicer arietinum] gi|502091969|ref|XP_004489681.1| chr0 119272644 119286017 -
5 domain predictions
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Lj0g3v0260549.1
n.a. PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|359488195|ref|XP_002272597.2| chr0 135344993 135345938 +
5 domain predictions
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Lj0g3v0326409.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356533151|ref|XP_003535131.1| chr0 170633599 170648023 -
5 domain predictions
 –
Lj0g3v0335289.1
n.a. PREDICTED: peptide chain release factor 2-like, partial [Cucumis sativus] gi|449485390|ref|XP_004157153.1| chr0 175581803 175583331 -
2 domain predictions
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Lj1g3v1548800.1
n.a. PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max] gi|356515734|ref|XP_003526553.1| chr1 18549341 18552657 +
5 domain predictions
 –
Lj1g3v1788430.1
n.a. PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| chr1 21495977 21527096 +
2 domain predictions
 –
Lj1g3v2312970.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] gi|356521002|ref|XP_003529147.1| chr1 27213345 27223358 -
5 domain predictions
 –
Lj1g3v2312970.2
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] gi|356521002|ref|XP_003529147.1| chr1 27213345 27223358 -
5 domain predictions
 –
Lj1g3v2840270.2
n.a. PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356531868|ref|XP_003534498.1| chr1 32344983 32350565 -
2 domain predictions
 –
Lj1g3v4694270.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr1 55813384 55814557 +
2 domain predictions
 –
Lj1g3v4789600.1
n.a. PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356571075|ref|XP_003553706.1| chr1 57651506 57654655 +
2 domain predictions
 –
Lj1g3v4830340.1
n.a. PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356503962|ref|XP_003520768.1| chr1 58365179 58369661 -
2 domain predictions
 –
Lj1g3v4916370.1
n.a. PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356505530|ref|XP_003521543.1| chr1 59576360 59582206 -
2 domain predictions
 –
Lj1g3v4916370.2
n.a. PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356505530|ref|XP_003521543.1| chr1 59576360 59582206 -
2 domain predictions
 –
Lj1g3v4955430.1
n.a. PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max] gi|356571155|ref|XP_003553745.1| chr1 60351091 60355261 -
5 domain predictions
 –
Lj2g3v0156840.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr2 2819462 2821529 +
2 domain predictions
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Lj2g3v0521160.1
n.a. PREDICTED: peptide chain release factor 2-like [Cicer arietinum] gi|502162777|ref|XP_004512613.1| chr2 6914351 6920435 -
2 domain predictions
 –
Lj2g3v0866690.1
n.a. PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| chr2 13389298 13403644 -
2 domain predictions
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Lj2g3v2572170.1
n.a. PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|359488195|ref|XP_002272597.2| chr2 35347502 35350886 -
4 domain predictions
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Lj2g3v2572180.1
n.a. PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|359488195|ref|XP_002272597.2| chr2 35352078 35352942 -
5 domain predictions
 –
Lj2g3v3188380.1
n.a. PREDICTED: ribonuclease 3-like protein 2-like [Cicer arietinum] gi|502099207|ref|XP_004491416.1| chr2 40943280 40945889 -
5 domain predictions
 –
Lj3g3v0139450.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr3 1048060 1052549 -
2 domain predictions
 –
Lj3g3v1074930.1
n.a. Ribonuclease [Medicago truncatula] gi|357453939|ref|XP_003597250.1| chr3 14438181 14442528 +
5 domain predictions
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Lj3g3v1759400.4
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508713108|gb|EOY05005.1| chr3 22166604 22170356 +
2 domain predictions
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Lj3g3v3085550.1
n.a. PREDICTED: double-stranded RNA-binding protein 2-like [Cicer arietinum] gi|502145364|ref|XP_004505998.1| chr3 38623219 38627522 -
5 domain predictions
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Lj4g3v0286120.1
n.a. PREDICTED: small RNA 2'-O-methyltransferase-like [Glycine max] gi|356510770|ref|XP_003524107.1| chr4 3447369 3471705 +
2 domain predictions
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Lj4g3v0450840.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] gi|356521333|ref|XP_003529311.1| chr4 6448369 6458652 +
5 domain predictions
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Lj4g3v0450840.2
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] gi|356521333|ref|XP_003529311.1| chr4 6448369 6459827 +
5 domain predictions
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Lj4g3v0462590.1
n.a. PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] gi|356521382|ref|XP_003529335.1| chr4 6894978 6898177 -
2 domain predictions
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Lj4g3v0462600.1
n.a. PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] gi|356521382|ref|XP_003529335.1| chr4 6895339 6898171 -
2 domain predictions
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Lj4g3v0473150.1
n.a. PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|359488195|ref|XP_002272597.2| chr4 7193955 7194826 +
4 domain predictions
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Lj4g3v3113160.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr4 41598383 41600418 +
2 domain predictions
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Lj4g3v3114070.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356527870|ref|XP_003532529.1| chr4 41880596 41891192 +
4 domain predictions
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Lj4g3v3114070.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356527870|ref|XP_003532529.1| chr4 41880623 41891192 +
4 domain predictions
 –
Lj5g3v0962640.1
n.a. PREDICTED: ribonuclease 3-like protein 2-like [Cicer arietinum] gi|502099207|ref|XP_004491416.1| chr5 14689276 14691452 -
2 domain predictions
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Lj5g3v2169560.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum] gi|502120600|ref|XP_004497017.1| chr5 31162361 31172109 +
3 domain predictions
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Lj6g3v1918200.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr6 21702343 21706161 +
2 domain predictions
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LotjaGi1g1v0026400.1
n.a. Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0026400 LjG1.1_chr1 3191603 3194255 +
5 domain predictions
 –
LotjaGi1g1v0093000.1
n.a. Double-stranded RNA binding protein, putative; TAIR: AT1G09700.1 dsRNA-binding domain-like superfamily protein; Swiss-Prot: sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3; TrEMBL-Plants: tr|V7B8H0|V7B8H0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0093000 LjG1.1_chr1 13642434 13648461 -
5 domain predictions
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LotjaGi1g1v0093000.2
n.a. Double-stranded RNA binding protein, putative; TAIR: AT1G09700.1 dsRNA-binding domain-like superfamily protein; Swiss-Prot: sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3; TrEMBL-Plants: tr|V7B8H0|V7B8H0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0093000 LjG1.1_chr1 13642567 13648449 -
5 domain predictions
 –
LotjaGi1g1v0345300.1
n.a. Double-stranded RNA-binding protein 3; TAIR: AT1G09700.1 dsRNA-binding domain-like superfamily protein; Swiss-Prot: sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1; TrEMBL-Plants: tr|I1K9R9|I1K9R9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0345300 LjG1.1_chr1 81210541 81214230 +
5 domain predictions
 –
LotjaGi1g1v0372300.1
n.a. Dicer-like protein 3; TAIR: AT3G43920.2 dicer-like 3; Swiss-Prot: sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a; TrEMBL-Plants: tr|K7KIB7|K7KIB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372300 LjG1.1_chr1 85036555 85063016 +
3 domain predictions
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LotjaGi1g1v0439500.1
n.a. RNA polymerase II C-terminal domain phosphatase-like 2; TAIR: AT5G01270.1 carboxyl-terminal domain (ctd) phosphatase-like 2; Swiss-Prot: sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2; TrEMBL-Plants: tr|K7L1T3|K7L1T3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0439500 LjG1.1_chr1 93545380 93556947 -
5 domain predictions
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LotjaGi1g1v0777500.1
n.a. Double stranded RNA binding protein 3; TAIR: AT3G26932.1 dsRNA-binding protein 3; Swiss-Prot: sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2; TrEMBL-Plants: tr|A0A151TXG6|A0A151TXG6_CAJCA Ribonuclease 3; Found in the gene: LotjaGi1g1v0777500 LjG1.1_chr1 134960984 134965376 -
5 domain predictions
 –